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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL08759_evm12 >transcript:BL08759_evm12-protein ID=transcript:BL08759_evm12-protein|Name=transcript:BL08759_evm12|organism=Branchiostoma lanceolatum|type=polypeptide|length=251bp
MKLTDGTLRSFKVAKVFRENSDRINSLDFAPSGETLISSSDDDSIVIYDC
QEGKPKRTLYSKKYGVDLIRFTHAANTVIYSSNKIDDTIRYLSLHDNKYI
RYFPGHTKKVVALCMSPIDDTFMSGSLDKTIRLWDLRSPNCQGLMHVPGR
PVCNFDPEGLIFAAGINSEMIKLYDLRSFDKGPFTTFRLQQDKDCDWTGL
KFSNDGKLILISTNGTVIRLIDAFSGTPLQQFMVRQWAELDETFSSKCVG
E Run BLAST on NCBI mRNA from alignment at Sc0000085:273267..277116- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL08759_evm12 ID=transcript:BL08759_evm12|Name=transcript:BL08759_evm12|organism=Branchiostoma lanceolatum|type=mRNA|length=3850bp|location=Sequence derived from alignment at Sc0000085:273267..277116- (Branchiostoma lanceolatum)
CGTGATCATTAGGCAGCAAGAAATGGAGGATCGGCTCCCAACAAATTTCG
TCGTGAAAAATTCTCCACTAACTCTACCTTTCCACCCAGCCCCAAACAAA
AATATCTCTCTCTACATGCTGTAAAGAACCCAGGGCACAAATTTGTCGCC
AAAATGAAGCTGACTGATGGGACTCTGCGTAGTTTTAAGGTGGCGAAAGT
GTTCAGGGAGAATAGCGACCGTATCAACAGCTTGGACTTCGCCCCAAGCG
GAGAGACACTAATATCCAGCTCGGATGATGACTCTATCGTTATATACGAC
TGTCAGGAGGGAAAGTACGTAAGTCCGCACCAGGTGCTGTCCTGGGCGGT
TGGTTTCCGGCGCCATTCGTTCCACAAAAAATCACTGCATGCTTGGCGCT
CAAAAAGAGCAAACATGGCGGACCTGAAAAATGGACGCGGCCATGTTATA
AAGGGGGATACTTTTATGGGGGAAATATTTTTCTGATATCTTAGATGCTT
ACTTCTGCTATATAGTGTGATCTGTGTTATGGTAGGTAAGTAAACAAAAG
TATTGCATGGATAGTAAGTTCTGTAATATTTGCTGGTAAGTTGGATGTCA
AGGCGGTAGTTCCGTTATTGATATGCAAATTAGTCTGGTTTTTCAAGGGC
CGATGCGGCGTGGAGAAGACAGATAGGTGGAATTTTCTACCACGGAGTCT
GAGGTTTTGTCCGGATGGAAATTCCTGTAACTGACTTTGTACTACAGTAA
CACCATATTCTAACATTTCCTATAGTTTTTCTTTCTTTAAATTCCCCTAT
TTATTCAGAAATTGAGCCGTAGCCAGATTGATGGAGATGGCTGATTTGCA
TATGTATCGGATAGCTTGAACTATACCATTCGATGGTAGGGGTGACAGGT
TGATTGAATAAGACAATATATCCCATGGGGCCATCGTTCTGGGAGGGAAA
GTTGAAGTGAGGGGCTGTGAGGCAATGATGGAAAAATATTAAATGAAGCA
GAATAATTCTTACAAGATATGTTGATGAATTTAATTGTCCAACCAGCCTT
TGATCAGCATACAAATAGAAATATTTTCAAAAAGAAACCGTTTAACGACA
ACCTTTAGCCTGCTACTGTATACTAGTAGTAATGCAAAACTGCAGACCAA
TTTGACAATGTAAGATTATATAATGTCACATGTCATTGGATTCAAGCCAA
ACAAATTTTAATTCTCACATAGTAAATGGTTCACTCCTTACTTCTTGGCT
AAAAACTATGTTCATTAGTCAGTCTTCATACATTGAAATATAAATACATT
TATATCCTACACTTGTACGTTGGACAGTTAGGGATGATTTCCTTCTATTC
TGTAGCTTCAGCATGAGTGACTTATTGGGAAATTGGACATGTTAGCTATC
TGTAGCAAAACTGAATTTGTATGGACTTCTCAGGAAAATGACAAATACGG
TCACTTCATAGTCATGATCAATCAAGACACTCCAACTGTTGTGATGAAAT
TGGAAGCTAACTGGCAGAGACAGCTGTTCTTTGGTTTATGCACTTCAAGT
TAAAGGTCAGAAAAAATGGGCCCAAAATTCATAAACAAATAAAACTCTGC
TTCTCAAGTCAGGAAGAGAGTAGTTCCAGAAACATAATTGAATTTGGGGA
AAGTTGATAATTTCAAATGCAATTGTGTGTTGCAGTAGGAATGATAAAGA
TAGGATTTTGGAAGTATGAAGGAAATGTCAGTCAAGGATTTCCCATAAAA
GTGGTACCTCTTGGATTATTAGCTTTAAACGGGGAATATTCTAAACAGTT
ATGTCCATCTTTACAATCACTAATTTTCACACAGGCACTGTTTCATAGGC
ACTATTATTCTCGATGATTTATTCTGTTCTTGTGTTTGTCTATCACAGAC
CCAAGAGAACATTGTACAGTAAGAAGTATGGGGTTGATCTCATCAGATTC
ACACATGCAGCCAACACGGTCATTTACAGCTCTAACAAGATTGATGGTAA
GTCGTGCCTAAACTTGTTAAGGACTAGCAATCTGTATATGTCTTACAGTG
ATGAAGTGTTCGTTTTGTACAGATCCATTACTTCTCAAGTAGTTACCAAG
AGACCTGTGTACGTGTCATGGTTAATTTTCTATTCTAGTTTTTATAAGCT
GCCAACTTTTGAAGTGTAGAGCTTTGATCTGAGTTGAAAAAAAAGCCAAG
CTGAGAACAATCACTCATTTCTTATTTTCTTTTCCCCATTACAGACACCA
TCAGATACCTGTCCTTGCATGACAACAAGTATATCAGATATTTCCCAGGA
CACACCAAAAAGTAAGTCTATGCTATATCTATCTATTATAAAAAGCCCAT
TCTGTTACTCAATTTCCTGGTTATTCTACCATAGGATAACACCTAAAATT
ATGTATTGGGGTTCACATAGAATGTTTTGTATATTACTACTAGTAAGAGT
GTCTGACATATGGATGAATTGATCTGGTTCCAGAGTGGTGGCCCTGTGCA
TGTCTCCCATCGATGACACCTTCATGTCAGGCTCCTTAGACAAGACAATC
AGACTGTGGGACCTGAGATCACCCAACTGTCAGGTATGTACTCTTCCTGG
CCTAGAAAGAACAGTCCAAAACAATCAATTACGGACAGAGATATTAGACA
AAACTTCTTGTTGTATGGTGGTATATTTATAGATGTCACAAGATAACAGG
AAGTTTGTAGATTGTATGATAGATTCTTTGGATAGAAGTAGTCCATGTTA
TGTCAGATTGAATAAAAGCCAGAGTATGAAAATATTGAACTTCATGCTTG
ACTTATATTAAGTGCTTAGCAAGTCTTATTGCTATATATCCTTTAAGTTC
ATCATGTGCGGAAATTTATGTTTAACCCATGTGACATTGTACATACATAC
AGTACATGAACGTTACATCAAACAATGCTGGAACTCAAATCTTTTTCACT
TTTGTCCAGGGGTTGATGCACGTCCCCGGCAGACCTGTGTGCAACTTTGA
TCCTGAGGGCCTGATCTTCGCCGCTGGGATCAACTCTGAGATGATCAAGC
TGTATGATCTACGATCCTTTGACAAGGTCAGCTTTACTGTCTGGAACCGT
TTGTGTCCTCGTGTGGCTTGTCAAAATCTCATTTTGAAGTTTGAGCTAAG
GACAGTTGTACACAGCTAACTTACATTTTGCGGGTTGATCCCTCCCATTT
TGAGTAGGTTGCTGTGTCTGTACCTATATAGCCAGTATAAACAACCTTCA
GCGTAACACACCAGATATATGACTCTGAGATATATATGTTTGTGGCAGTA
ACTCCTCATTCCCATGTATAGTGCTGATCTTTTGTCTCCCATTCTTTCCT
TTTTTTGTAGGGTCCGTTCACGACATTCCGACTGCAGCAGGACAAAGACT
GTGACTGGACAGGCCTGAAGTTCAGTAACGACGGGAAGCTCATCCTCATA
TCCACCAACGGGACGGTCATCCGGCTAATCGACGCCTTCAGCGGCACGCC
CCTGCAGCAGTTCATGGTGAGGCAGTGGGCTGAGTTGGATGAAACATTTA
GTAGCAAATGTGTGGGTGAATAGATGTAGAACCTTTAGATGTAGAACTTT
TGTAAATCATAGATGGTTAAAAGACATGTTCATTGGAACCAGAGTCTCCT
CATAGAGTTGTATACACTTCAATGGGCTGATGAATTTTCATCTTTGTGGC
ACAACTTAGTATTTCTCATGGTACAGTTTGGTCTTCTTTTGATGTTTTTT
TAAATTTTCCACTTTAGACTGCCACTTTTAGGAAGAGATTTACTTGATAC
ATGAATGGAAACCCTTTTTTTTCTATGTTGTTTGTTTGTATTGCATACCC
Coding sequence (CDS) from alignment at Sc0000085:273267..277116- >transcript:BL08759_evm12 ID=transcript:BL08759_evm12|Name=transcript:BL08759_evm12|organism=Branchiostoma lanceolatum|type=CDS|length=4536bp|location=Sequence derived from alignment at Sc0000085:273267..277116- (Branchiostoma lanceolatum)
ATGAAGCTGACTGATGGGACTCTGCGTAGTTTTAAGGTGGCGAAAGTGTT
CAGGGAGAATAGCGACCGTATCAACAGCTTGGACTTCGCCCCAAGCGGAG
AGACACTAATATCCAGCTCGGATGATGACTCTATCGTTATATACGACTGT
CAGGAGGGAAAACCCAAGAGAACATTGTACAGTAAGAAGTATGGGGTTGA
TCTCATCAGATTCACACATGCAGCCAACACGGTCATTTACAGCTCTAACA
AGATTGATGACACCATCAGATACCTGTCCTTGCATGACAACAAGTATATC
AGATATTTCCCAGGACACACCAAAAAAGTGGTGGCCCTGTGCATGTCTCC
CATCGATGACACCTTCATGTCAGGCTCCTTAGACAAGACAATCAGACTGT
GGGACCTGAGATCACCCAACTGTCAGGGGTTGATGCACGTCCCCGGCAGA
CCTGTGTGCAACTTTGATCCTGAGGGCCTGATCTTCGCCGCTGGGATCAA
CTCTGAGATGATCAAGCTGTATGATCTACGATCCTTTGACAAGGGTCCGT
TCACGACATTCCGACTGCAGCAGGACAAAGACTGTGACTGGACAGGCCTG
AAGTTCAGTAACGACGGGAAGCTCATCCTCATATCCACCAACGGGACGGT
CATCCGGCTAATCGACGCCTTCAGCGGCACGCCCCTGCAGCAGTTCATGG
TGAGGCAGTGGGCTGAGTTGGATGAAACATTTAGTAGCAAATGTGTGGGT
GAATAGATGAAGCTGACTGATGGGACTCTGCGTAGTTTTAAGGTGGCGAA
AGTGTTCAGGGAGAATAGCGACCGTATCAACAGCTTGGACTTCGCCCCAA
GCGGAGAGACACTAATATCCAGCTCGGATGATGACTCTATCGTTATATAC
GACTGTCAGGAGGGAAAACCCAAGAGAACATTGTACAGTAAGAAGTATGG
GGTTGATCTCATCAGATTCACACATGCAGCCAACACGGTCATTTACAGCT
CTAACAAGATTGATGACACCATCAGATACCTGTCCTTGCATGACAACAAG
TATATCAGATATTTCCCAGGACACACCAAAAAAGTGGTGGCCCTGTGCAT
GTCTCCCATCGATGACACCTTCATGTCAGGCTCCTTAGACAAGACAATCA
GACTGTGGGACCTGAGATCACCCAACTGTCAGGGGTTGATGCACGTCCCC
GGCAGACCTGTGTGCAACTTTGATCCTGAGGGCCTGATCTTCGCCGCTGG
GATCAACTCTGAGATGATCAAGCTGTATGATCTACGATCCTTTGACAAGG
GTCCGTTCACGACATTCCGACTGCAGCAGGACAAAGACTGTGACTGGACA
GGCCTGAAGTTCAGTAACGACGGGAAGCTCATCCTCATATCCACCAACGG
GACGGTCATCCGGCTAATCGACGCCTTCAGCGGCACGCCCCTGCAGCAGT
TCATGGTGAGGCAGTGGGCTGAGTTGGATGAAACATTTAGTAGCAAATGT
GTGGGTGAATAGATGAAGCTGACTGATGGGACTCTGCGTAGTTTTAAGGT
GGCGAAAGTGTTCAGGGAGAATAGCGACCGTATCAACAGCTTGGACTTCG
CCCCAAGCGGAGAGACACTAATATCCAGCTCGGATGATGACTCTATCGTT
ATATACGACTGTCAGGAGGGAAAACCCAAGAGAACATTGTACAGTAAGAA
GTATGGGGTTGATCTCATCAGATTCACACATGCAGCCAACACGGTCATTT
ACAGCTCTAACAAGATTGATGACACCATCAGATACCTGTCCTTGCATGAC
AACAAGTATATCAGATATTTCCCAGGACACACCAAAAAAGTGGTGGCCCT
GTGCATGTCTCCCATCGATGACACCTTCATGTCAGGCTCCTTAGACAAGA
CAATCAGACTGTGGGACCTGAGATCACCCAACTGTCAGGGGTTGATGCAC
GTCCCCGGCAGACCTGTGTGCAACTTTGATCCTGAGGGCCTGATCTTCGC
CGCTGGGATCAACTCTGAGATGATCAAGCTGTATGATCTACGATCCTTTG
ACAAGGGTCCGTTCACGACATTCCGACTGCAGCAGGACAAAGACTGTGAC
TGGACAGGCCTGAAGTTCAGTAACGACGGGAAGCTCATCCTCATATCCAC
CAACGGGACGGTCATCCGGCTAATCGACGCCTTCAGCGGCACGCCCCTGC
AGCAGTTCATGGTGAGGCAGTGGGCTGAGTTGGATGAAACATTTAGTAGC
AAATGTGTGGGTGAATAGATGAAGCTGACTGATGGGACTCTGCGTAGTTT
TAAGGTGGCGAAAGTGTTCAGGGAGAATAGCGACCGTATCAACAGCTTGG
ACTTCGCCCCAAGCGGAGAGACACTAATATCCAGCTCGGATGATGACTCT
ATCGTTATATACGACTGTCAGGAGGGAAAACCCAAGAGAACATTGTACAG
TAAGAAGTATGGGGTTGATCTCATCAGATTCACACATGCAGCCAACACGG
TCATTTACAGCTCTAACAAGATTGATGACACCATCAGATACCTGTCCTTG
CATGACAACAAGTATATCAGATATTTCCCAGGACACACCAAAAAAGTGGT
GGCCCTGTGCATGTCTCCCATCGATGACACCTTCATGTCAGGCTCCTTAG
ACAAGACAATCAGACTGTGGGACCTGAGATCACCCAACTGTCAGGGGTTG
ATGCACGTCCCCGGCAGACCTGTGTGCAACTTTGATCCTGAGGGCCTGAT
CTTCGCCGCTGGGATCAACTCTGAGATGATCAAGCTGTATGATCTACGAT
CCTTTGACAAGGGTCCGTTCACGACATTCCGACTGCAGCAGGACAAAGAC
TGTGACTGGACAGGCCTGAAGTTCAGTAACGACGGGAAGCTCATCCTCAT
ATCCACCAACGGGACGGTCATCCGGCTAATCGACGCCTTCAGCGGCACGC
CCCTGCAGCAGTTCATGGTGAGGCAGTGGGCTGAGTTGGATGAAACATTT
AGTAGCAAATGTGTGGGTGAATAGATGAAGCTGACTGATGGGACTCTGCG
TAGTTTTAAGGTGGCGAAAGTGTTCAGGGAGAATAGCGACCGTATCAACA
GCTTGGACTTCGCCCCAAGCGGAGAGACACTAATATCCAGCTCGGATGAT
GACTCTATCGTTATATACGACTGTCAGGAGGGAAAACCCAAGAGAACATT
GTACAGTAAGAAGTATGGGGTTGATCTCATCAGATTCACACATGCAGCCA
ACACGGTCATTTACAGCTCTAACAAGATTGATGACACCATCAGATACCTG
TCCTTGCATGACAACAAGTATATCAGATATTTCCCAGGACACACCAAAAA
AGTGGTGGCCCTGTGCATGTCTCCCATCGATGACACCTTCATGTCAGGCT
CCTTAGACAAGACAATCAGACTGTGGGACCTGAGATCACCCAACTGTCAG
GGGTTGATGCACGTCCCCGGCAGACCTGTGTGCAACTTTGATCCTGAGGG
CCTGATCTTCGCCGCTGGGATCAACTCTGAGATGATCAAGCTGTATGATC
TACGATCCTTTGACAAGGGTCCGTTCACGACATTCCGACTGCAGCAGGAC
AAAGACTGTGACTGGACAGGCCTGAAGTTCAGTAACGACGGGAAGCTCAT
CCTCATATCCACCAACGGGACGGTCATCCGGCTAATCGACGCCTTCAGCG
GCACGCCCCTGCAGCAGTTCATGGTGAGGCAGTGGGCTGAGTTGGATGAA
ACATTTAGTAGCAAATGTGTGGGTGAATAGATGAAGCTGACTGATGGGAC
TCTGCGTAGTTTTAAGGTGGCGAAAGTGTTCAGGGAGAATAGCGACCGTA
TCAACAGCTTGGACTTCGCCCCAAGCGGAGAGACACTAATATCCAGCTCG
GATGATGACTCTATCGTTATATACGACTGTCAGGAGGGAAAACCCAAGAG
AACATTGTACAGTAAGAAGTATGGGGTTGATCTCATCAGATTCACACATG
CAGCCAACACGGTCATTTACAGCTCTAACAAGATTGATGACACCATCAGA
TACCTGTCCTTGCATGACAACAAGTATATCAGATATTTCCCAGGACACAC
CAAAAAAGTGGTGGCCCTGTGCATGTCTCCCATCGATGACACCTTCATGT
CAGGCTCCTTAGACAAGACAATCAGACTGTGGGACCTGAGATCACCCAAC
TGTCAGGGGTTGATGCACGTCCCCGGCAGACCTGTGTGCAACTTTGATCC
TGAGGGCCTGATCTTCGCCGCTGGGATCAACTCTGAGATGATCAAGCTGT
ATGATCTACGATCCTTTGACAAGGGTCCGTTCACGACATTCCGACTGCAG
CAGGACAAAGACTGTGACTGGACAGGCCTGAAGTTCAGTAACGACGGGAA
GCTCATCCTCATATCCACCAACGGGACGGTCATCCGGCTAATCGACGCCT
TCAGCGGCACGCCCCTGCAGCAGTTCATGGTGAGGCAGTGGGCTGAGTTG
GATGAAACATTTAGTAGCAAATGTGTGGGTGAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000085 | genome | Sc0000085:273267..277116 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL08759_evm12 |
| Biotype | protein_coding |
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