transcript:BL07498_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL07498_cuf1
Unique Nametranscript:BL07498_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL07498_cuf1

>transcript:BL07498_cuf1-protein ID=transcript:BL07498_cuf1-protein|Name=transcript:BL07498_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=134bp
GAPIYRKKQRETNLAKMVNLLGIGVLLAFMMSGVAFAMMFVNFPLAWPGL
TSAMGKDFVQAATPNSLRLQWDRVGGGNDAAGYSLYIRDLPLLSEVTLPP
VDVGNASEEIAIFGDLQTRSKYKVWPFWLYSEIS
Run BLAST on NCBI

mRNA from alignment at Sc0000112:795290..798798+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL07498_cuf1 ID=transcript:BL07498_cuf1|Name=transcript:BL07498_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3509bp|location=Sequence derived from alignment at Sc0000112:795290..798798+ (Branchiostoma lanceolatum)
GGGGCTCCCATATACCGAAAGGTACGGCAGAAATGCAGTAGTTTAAGTTT
CAAAACCTTCACCTTTCCTTGTCCCATCCTCATCTTGAGGGTCGGGCCTC
AGGTCGCCTTCAGCACCAGTTTCCTCCACCCCTCCCTGTCCTTCACCCTC
TGTGTGCAGACTGCCAGTAACCTTCCAGTCCAGTCCCTGATGTCGTCTCC
CCTTCTCCTGCGTGGCCTCCCTCTACCTCTGATGCCACAGATCTTCCCCA
GCAGGATGTGGGCTGAGACGTTCTGGGCTCTGATGACGTGTCCACTGTAC
TGGAGCTTCTGTCCTTTAACCATGTTGATGAGAGATATTTCCATCCCTAT
CTCTTTCAGTGCTGAGGTGTTGGTACAAGGTTCTGTCCAGGTGACAAAAC
AAAGCATTAAAACTTCCCTGGCAGATGCCCTTTAACTTGTCATCTCATGA
GTAAGGGGAAAATTGCTCCCACGTTCTGACGCGTAATGTAAACACCGGTT
TTCCCGTCTTTAGAAACAGCGCGAGACGAACCTGGCTAAGATGGTGAACC
TGCTGGGGATCGGCGTGCTTCTCGCCTTCATGATGTCCGGAGTCGCCTTC
GCCATGATGTGTGAGTACACCTAATTCACTTTCACTTCCGTCTGAGACGT
CATGAGTACACCTCATTCACTTTCACTTCCGTCTGAGACGTAATGAGTAC
TCCTCATGCACTTTCACTTCCGTCTGAGACGTCATGAGTACACCTCATTC
ACTTTCGTTTCCGTCCGAGACGTCACGTTCCCGCCGCATCAGCTACGTTT
GTTTCAATACCGATTCTAAATGTCATCATTAATGTTACGTTTGTGAAGGT
TAGACATCCAGGTAAACAATCTATATATAAGATAAGTTAGGAAGTTTTTC
TACATTACAATGTCGCTTATGCATGACTGTGTGATTTGCCATGTAAAAAC
CGGTTTTTCTAGTTATTGTATATAAGTACTGGTTCGTTCTGCTAGTTACT
CCGGGGAGGAGGTGTGACCTCCTTCTGGGAGTATTGGGAATGTATTTGTT
TGCGCGTTCGCAGCTATAACTCACGATCCCGTCGTCGCATTGGNTTACTC
CGGGAAGGAGGATGACCTCCTTCTGGGAGTATTGGGAATGTATTTGTTTG
CGCGTTCGCAGCTATAACTCACGATCCCGTCGTCGCATTGGTGTGTATCT
TGGCATATCGTTTGCCTGGTTCGGTGTGGTGATGCACAATAGCTTTGTTA
CACCATAACTACTTTAAACGTCAATCCAATATCGTAATTGCACCCCTATA
ATTAATGCTATGTCCCACTGCCCTGCCATAGGGACCATGTTATAATCCGT
TATGCATGACTGGAATACTTCAGGCAGATACGGGGTATAAATCTTCCTTA
CTTGCTGTGATCGTATAGTCACTGTTACATTGAAAAATAGACAACGTGCA
TCACCACACGCAACCTAGCAAACGATATACCAAGTTACATACCAATGCGG
CAACGGGAATTGTGAGTTTTAGCTGCGAACATGTGCAGAGTGACCTCCAG
TCTGTGTATTAAGTATGCCGTGTCCACTCGCAACTCGCATACAGTATGTG
CGCACGGGACGGACGATGCACTTTTACGCACAGTGTGAAAATGGCAAATC
TCTGGACCTTCAAACTTACCACACTTGTAGTTTATAATACGGAGGCTGTG
ACAATGTAAAAAGTTTACGCAGGGGATGAAAGATTGTTGAGAAATATCTC
TCAGAAAAGTGCGCGCGCCAGTGTCACTTCCGGGTGGTTAGATCCGGTGA
CCTTTGACCTTCGTGAAATGTTACGATAATATAAATTAGCCTTTTTTATT
GCAAATAGCTTGATAGCTATAGATCAGGCCGGCCTGCAATAAATTGTGGA
AAGAGGATTTACTGCATATTTGTGATTTCTGATACATCTTAGTTGTAAGG
CTGAATGGTTCGTTGATAATTGAAAAGGGGCCATCTAGATCTAACTTTGT
GACTTTTCCCGGAATTTCTAGATCCCATCTATGTCATGCTGTAAAAACAT
ACTTTTCAGCAGGTTGACCACTCCTGTATTGAAAGAAAAAGATAAACAAA
CACTTTTTCTTTACTTGCTCTAAAACACTATTTGGACTGTGCAGAGATGC
AAAGTTTGTGTGGGTCAATACTTGTACATACTATAAATACTTCACGGAGA
ATTGTGTCCTACGGACTCTTGTTCACTTTAGTGACGCTGAAGAAGAGTGA
TGGATGTCACTCGAAACGTCCGGAAATAAATCTCCGAATTTTTATCCTGT
TGTAGAGTTTGAATTTCTCCTTATACATCATCAATGTTGTTGACCTGTTT
TTCAGTCGTTAACTTCCCCCTGGCGTGGCCCGGCCTGACCTCAGCGATGG
GCAAAGGTGAGGCAACATTCACCAGATATCAGTTTATCGTCTGCAGACGT
CTTTATTCATGGCCGGTTTCTGTTTTATTTGAACAATAAGACTAAACTTA
AGGGTTGTCTATCAAACTTAATGAGCTTTTTGCCTTAGTACAATAGACAG
AAGAAATCAAGCGTCGATGAAGGTTAGGCATACAATTGATACGATACACA
ATAAAAAAGTAATTCAAACAACTGGATGTTCGCAGGGGATTTAAATCTTT
TAGAAGTTGAAACAATAGGGCGGCCGCCGGGCAGTGAGAAAACGAAGAAG
AATTTTCGTGGTGAAGAGGTCACTGAGAACTATCAGCTAAAACTATTTCA
AGTGTTACGTTGATGAAAGTTAGACATCCAGGTAGTAAGATACGCCAAAA
ATAATTACTAAAGCAACTGGATAAAGTTTTGAAACAGTCAGACGTTTCAG
AAAGCATCCACTGTCTTTCGTCAGTGCCTCATTATTTTTGGCGTAACTGA
ATAGATGTTATACGTTGTATGGTGTTTCATGTAGCACCCACTACCTTTAG
TTAGTGACTTCTGTTTTGTTTTTGAAGCTACCATCTTCAATTTACTGAAG
GTTCTGTAGCCTATAGTGACTGACGAAATGTAGTGGCTGACCGTTTATAA
CATCTAGTTGTTTGAGCAGCTGTTGTTTTGTGACGATCCCCAGATTTTGT
GCAGGCGGCGACTCCCAACAGTCTCCGTCTGCAGTGGGACCGCGTCGGAG
GGGGGAACGACGCTGCAGGGTACAGCCTCTACATCCGGGACCTGCCCTTA
CTCTCAGAGGTCACCCTCCCTCCGGTGGACGTAGGGAACGCCAGTGAGGA
GATTGCCATATTTGGGGACCTGCAGACCCGGTCCAAGTACAAGGTGTGGC
CGTTCTGGTTATACTCTGAAATATCATGAAAGCATGCCGGACTTTTTAAA
AACATTTTAAAGACAATCTATGTGCATAGCTCTTCGGTATTATACAAAGA
CTGGCGATGAATCCCTTACTATGTCTTTTCTGATGTCTTTTCTCGACTTC
ATCACACCACAACGCTTAAACATCGTGGGCAACTTTTAGTGGCAAAAACG
GTCCTCCAC

Coding sequence (CDS) from alignment at Sc0000112:795290..798798+

>transcript:BL07498_cuf1 ID=transcript:BL07498_cuf1|Name=transcript:BL07498_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1620bp|location=Sequence derived from alignment at Sc0000112:795290..798798+ (Branchiostoma lanceolatum)
GGGGCTCCCATATACCGAAAGAAACAGCGCGAGACGAACCTGGCTAAGAT
GGTGAACCTGCTGGGGATCGGCGTGCTTCTCGCCTTCATGATGTCCGGAG
TCGCCTTCGCCATGATGTTCGTTAACTTCCCCCTGGCGTGGCCCGGCCTG
ACCTCAGCGATGGGCAAAGATTTTGTGCAGGCGGCGACTCCCAACAGTCT
CCGTCTGCAGTGGGACCGCGTCGGAGGGGGGAACGACGCTGCAGGGTACA
GCCTCTACATCCGGGACCTGCCCTTACTCTCAGAGGTCACCCTCCCTCCG
GTGGACGTAGGGAACGCCAGTGAGGAGATTGCCATATTTGGGGACCTGCA
GACCCGGTCCAAGTACAAGGTGTGGCCGTTCTGGTTATACTCTGAAATAT
CATGAGGGGCTCCCATATACCGAAAGAAACAGCGCGAGACGAACCTGGCT
AAGATGGTGAACCTGCTGGGGATCGGCGTGCTTCTCGCCTTCATGATGTC
CGGAGTCGCCTTCGCCATGATGTTCGTTAACTTCCCCCTGGCGTGGCCCG
GCCTGACCTCAGCGATGGGCAAAGATTTTGTGCAGGCGGCGACTCCCAAC
AGTCTCCGTCTGCAGTGGGACCGCGTCGGAGGGGGGAACGACGCTGCAGG
GTACAGCCTCTACATCCGGGACCTGCCCTTACTCTCAGAGGTCACCCTCC
CTCCGGTGGACGTAGGGAACGCCAGTGAGGAGATTGCCATATTTGGGGAC
CTGCAGACCCGGTCCAAGTACAAGGTGTGGCCGTTCTGGTTATACTCTGA
AATATCATGAGGGGCTCCCATATACCGAAAGAAACAGCGCGAGACGAACC
TGGCTAAGATGGTGAACCTGCTGGGGATCGGCGTGCTTCTCGCCTTCATG
ATGTCCGGAGTCGCCTTCGCCATGATGTTCGTTAACTTCCCCCTGGCGTG
GCCCGGCCTGACCTCAGCGATGGGCAAAGATTTTGTGCAGGCGGCGACTC
CCAACAGTCTCCGTCTGCAGTGGGACCGCGTCGGAGGGGGGAACGACGCT
GCAGGGTACAGCCTCTACATCCGGGACCTGCCCTTACTCTCAGAGGTCAC
CCTCCCTCCGGTGGACGTAGGGAACGCCAGTGAGGAGATTGCCATATTTG
GGGACCTGCAGACCCGGTCCAAGTACAAGGTGTGGCCGTTCTGGTTATAC
TCTGAAATATCATGAGGGGCTCCCATATACCGAAAGAAACAGCGCGAGAC
GAACCTGGCTAAGATGGTGAACCTGCTGGGGATCGGCGTGCTTCTCGCCT
TCATGATGTCCGGAGTCGCCTTCGCCATGATGTTCGTTAACTTCCCCCTG
GCGTGGCCCGGCCTGACCTCAGCGATGGGCAAAGATTTTGTGCAGGCGGC
GACTCCCAACAGTCTCCGTCTGCAGTGGGACCGCGTCGGAGGGGGGAACG
ACGCTGCAGGGTACAGCCTCTACATCCGGGACCTGCCCTTACTCTCAGAG
GTCACCCTCCCTCCGGTGGACGTAGGGAACGCCAGTGAGGAGATTGCCAT
ATTTGGGGACCTGCAGACCCGGTCCAAGTACAAGGTGTGGCCGTTCTGGT
TATACTCTGAAATATCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL07498gene:BL07498Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL07498_cuf1transcript:BL07498_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL07498_cuf1-E1BL07498_cuf1-E1-1564476830-314890Branchiostoma lanceolatumexon
BL07498_cuf1-E2BL07498_cuf1-E2-1564476830-314892Branchiostoma lanceolatumexon
BL07498_cuf1-E3BL07498_cuf1-E3-1564476830-314894Branchiostoma lanceolatumexon
BL07498_cuf1-E4BL07498_cuf1-E4-1564476830-314897Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000112genomeSc0000112:795290..798798 +
Properties
Property NameValue
Transcript idBL07498_cuf1
Biotypeprotein_coding