Blg13996.0 (mRNA) - B. lanceolatum

Overview
NameBlg13996.0
Unique NameBlg13996.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000473:126514..137636+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg13996.0 ID=Blg13996.0|Name=Blg13996.0|organism=Branchiostoma lanceolatum|type=mRNA|length=11123bp|location=Sequence derived from alignment at Sc0000473:126514..137636+ (Branchiostoma lanceolatum)
ATGTGCAAGTTCGTCTTAGTTTCATCATTTACCAGAACAGCCGGTTGTTC
CAGTCCAACCAGACAGCTCCTTCCTCAATGGGCACAAAAACCAGGGTCAA
CAGCAGGGTAATTGCGAGTAGATTCACTGGCATTGAACTCAAGAATCTAT
CGATACCAGTAGTGACAAGATACCTTCCTATTGTAAGTCAATTAATGTGA
GCTTCTATATGTTTGATTATTTCTTCACAGCAAAGTATATTTTCAAAATA
CAATTGGCAGGTTTTGCTTTACTGACTGCATAAAGTACTAGTTAAATCTA
AAGAGTTGTTTTCTTTTACAGAACTAGCTATTCCTGTCATTTTCAGCTTT
TACATTATATCATAGCTATTGACATAACCATCATACACATTTGTTTTTAT
ATCATGGTGTTATCGTTGTTTCCTGTATGCTATTTTTCTGATGTAACAAA
ACACGTTATCTAGAATTTGAAAAAAATATGAAAATGTACAACCAAAGAAT
GGTCTTTTTAGGCACTTTTACTTTATCGTTCAGTAATTGCTCAAATCTTT
GTATCCCTTCAAAGATTCAAAACAGCGCAAACAATACTGTCAAGGACATA
AGATGTGTTTCCTGGGACATTGATGCTGAAGAAGGGGTTGGCTCTTGGTC
AACATCAGGATGTGACTTTGTTGGGATTGACGATGGCAGGGTGGTGTGTA
ATTGCAGCCATCTTACCAATTTCGCTGTTTTGATGGTGAGTAAATTCTGA
AATATAGGCAGTTAAAGGACAGCACCACAGGATCTTGAAACCATTATTTC
CCAGTAGTTTTCATATTAAAACCTTGAAAAATTATTTTTTGCGTTTCGGC
GCATGCGCGCCGAAACGCATTCTCCTGGCTTTTACCTTCAAGCAAGGAGG
AAGGAAGGAAGCTTGGTTCAACACTGTGTCGCAGATTTGCATGTGACACA
GGACGGCGCAGATTTGCATGTGACACAGGACGGCGACCGCATGTAACTGC
TACAACTGTTCGGAAATATCATTGCATTGTGGTTTCGGACTTTGATATCC
TGAAAAATGACCATATTACATCTATTCCACAAGATTGCAGAAGAAAAAAA
ATGATTTCGTCAAGAAAACGACCAAAAATCGGCATAAATGATACCATATA
GTGAGGTTATAGCATTACGTCCAGAGTNNNNNNNNNNNNNNNNNNNNNNN
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TTTTTTTCATTAATAAATAAAGAAATATTTTATATTTGTTATTTTTAAAT
ATTCATTTAATATATACAAGGCCTTTGTCTTATGAACAGGACTTCATAGA
TTCCAAACCCGGCATTCGAATTTTTCTGTTCATTGTAATGGAAAATACCG
TGCAGCGGCTCCTATGCGCGGTAAGATGATTCTTGCAAAACACTCGCCAC
TAAACTTCTATCCCCGATGTAAACAGAGGCTCTTGATGTTGTTTGCAAAA
CAGCGATTCTTTGTTACAGTAGCAAATGCTCCATTGTTCAGTATCGACTT
CATTCAGACAACACGGACGTGGAAAGTGGCGCCCCTCGGCACAAAACTAT
GGGAATTTTCATGAATTTTAGCAAAATTACCCAGGAAAATAAGGAAGAAA
TGTTGTAAATGCGGAAACCAGAATAATACGGATGAGGTAGCTGTTGATTT
GTTTGACATTTGGTAGTCATTTTAGATAGAACCTTAGCTGTTATGAACTT
CTATTTCACTTAATTACCATAGTGCTGATGATTCAATGGTGCTTTTTCAA
ATTTTATGTTTTATTGCGTGCCATGTACATAATTACATTGATAGCTTTTA
TAATGAGCCTATTATACATTTTACAAATAAGTACAAGTTGTAGGCCAAGA
CCAGCTTTTTCAAAAGCACTTAAGTTAAGTGACGTAACTTCAAAATTGCT
TTCCCCAATCTGCCTTTCTCTATTAAAACAGTACTCATTTCCCAAAATGA
CAATTTTTCTTATAGACTGAACAGCCCTTGAGTGACTTCCTCTGGCAGAT
TTTACTTCAAGTAAAGGGAAAAGACAATTCACACTTATAAACGTAGCCGA
AACGCCAGCTTTTTTTAAAAGCTCTTGTTTTACATTAGTCCGCCTATTAT
TACCCTGTGCACCCGTTTGAACTTCGCGCTCTCCTCACTCTCCCCCGTCG
CGATTGGCGATTACGTAATGGTCTGCTGCCTCGTTCTGGGGCAGCTCTGA
CGTCACCGTTCTGGAACAGACTATTGGTTCTGAGGCCGCCACTTTGCGAG
TTGCACGACGATCGAATCCGTTTACAGTAGAATTGAGTTCAGATTTCTTA
TTGTTGCCGTTGTGATCGAGGACGGTCGTTGAAGGTTTCTACAGAGTTAC
AAGCCACGACAGGTCTCCCAAAATCAGCTAGCCGGCTTTGATCGAACCCC
AGTTGATATCCTCCCGTGCAGTGGGAGGGGGGCAGCCACCATGCCGGCCT
GTGTTGTTCGTAATTGTAAAAACTACCATGGGAGTACGAGGGGCAAAAAA
GAAGTGAGTTATCACAGATTTCCACAGGACAAACGCAGGCTTCACGAGTG
GCTGATCGCCGTGGAGCCGCACCTCAAACCGACTACGACGATTNCAAAGA
AGAAGTGAGTTATCACAGATTTCCACAGGACAAACGCAGGCTTCACGAGT
GGCTGATCGCCGTGGAGCCGCACCTCAAACCGACTACGACGATTGAGAAA
ATTCGCGAAAAAAACGCCAATAAAAATCATGGGGTGTTTGTCTGCTCGGA
CCATTTCTCCCCCGACTGTTGTTACGACAACCCAAAGGCAAAACTCATGG
TTCCTCACTTGAACAGATACCCCCCCCCCCAAACTGTTGTCAGATGATGC
CATCCCAACTATCTTCGGAAAATCAGTGGATTCCTCTGATTCTCAGCACA
ACAAGACAGCCAAGAAACAGGTAAGAAATGCTTCCTACAAATTATACTAA
TAATTGTTTTGTTGTCCATGACATGTGTATTCATGTACTAGTATATACCA
TACTTCTATGTTTCCTGATTTAAGTACACTTTAACAGTAACCTGCTATGT
TTTGATTTATTTCATTACAATTCATTTATCAATTTTCTTTGTTACAATTA
TTGATGAATGTGAATTTCTTGGGTTTTCATAATATTTATTCTAGTTTGTT
TATTTATCATACCAAAATAGGTCGATGATGAAATGGGTTTATTATCTGTT
TGAGCATTTTTTCTGTTTCTATGTATTTTCGTTTGATTATTTTTCATACC
AAAATAGGTTGATGATGAAATGGGTTTATTGATCTGTTTGGGCAATTTTT
TTCTGTTTCTGCAGTTTCATGGCTGTCTTTTATCAATTCAATAACAAGTG
CTTTTCAGTACTGAAAATGAATGCATTTTTCATGTCTTGGGAAATATAAT
TTGTTAAACCTAACAAAATGATTGACATTTTAATCTGCTCCTATGGAAAT
GAGCCTGACCAAGCTGCTATGATGATGATGTTTGTACAATTGTAATAACT
AATAATGCAACAATGCACTATCATTGTAGTACAGCGATATATTTAGGGAG
GAGGGCATTGTTGGCCTGGTCCTGACCTGATTTTTAGAAATAATTTTCTT
TGTGTTGTTTCACATCTCAGTGATATTTTTCTGTCCAATATTCCAGCTCA
TCGATGACTTGCTTCAGTCTTCAGGAGACATCTTCAATATAAAAAACCTT
AGTATGGGGATTTTAACTTTTTTAAGCAGGGTATCTATTCTTCTAAAAGT
ACAAAAAAGCCATTCCAAAAGAAGGTGTGATTAAGGGCAACCCTCATGGC
AAAATCTTTAATTTATTTTGGACTTTACTTTGTGATACTTTGTCGTAATT
GGATAAAAGACTCTAGTCACACTACTGTACTATAACCGTTACGACTTACT
GTTATTATACATATCACTTTTGTATTTTAGGATATCTACGAGGGCCTGCA
CAGCTCTGCACTGGACATCATCAGTAAGGTTGGGATTGCCTTGTCAATTA
CAGGCCTCGTCCTTACTATTATCAGCTACCTGATATTCAAGTAAGTTTTT
CGGAGAGTTATTCAGGCTGTGTATCAACGATCAAACATAGATAGCTTTGG
ATTTTTTAGTATGTTGGAACAGCACTTAATATAGATAGTGGCACTGTAAC
ATTTAGCGATGGTGCAAAACTAGTACCAACATGCACACGGTGATTAAATT
GATGCCCTCGCGTTTACCGTTGCGCTGAAGAAGACTGGTCAGTAGTACTG
GATCTGGTGTCAGTGAATACCCACTGTAGCTGTAACATTTGTTTCGTTCC
CATAATGTTACAACTCATACTTTGTTTCTAATGCATGATGACATAAAAAT
GCTGCCCAGTATATTTCAACTAACATAAAAACAATGTATTTAATAAAGTA
TTAGTGTAGATATAACAGACCGCAATCAAGTTGTCAAACTTTTTGTGCTA
AGTATAGTTTCATATAAGGTATTGTTTTATAATTTGTGCTTACTCTTCTA
TGAAGATGAAATTGCTGATGCTGAATGTTTCTTAACGTGTATAGTTCTAA
TAGTTTTGTTCATGTTTATTTGTATATTCTTTCCCTTTTGCTTCATTTTT
GCAGGGAGCTTCGTCAGACAAGGCCACAGCACATCCTTGTAAACCTTTGC
GTCGCCTTGCTGGCAACTCTCATCATATTCCTGGCTGGCATTGAAGCTAC
CAACTCCCCTGTTGGCTGTACCGTCGTGGCGTTTTTCCTACACTACTTCC
TCTTGGCTGTGTTTATGTGGATGGCCGTTGAAGCCTTCAACATGTACCTG
GCATTTGTGAAAGTTTTGGGGGCACATGTATCCAAACTTCTTCTTAAGGC
GGCTATCTTTGCATGGGGTGAGTTGATTGACATCACATTACAATATGGTA
TCAAAAAGAAATTGACAACATTTAAATGTCGTGGAAAATTCATCCAAATG
ACCGACCCAATCGCGTCAGTAAACACATGACGTCAGTTTTTCGTTAAAAT
ACCTGGAAGCTTTTACCACCCACCGTTTAGGTGGATAACAATACTGTGAC
GCACGTAGAAATGTAGGCATCATTATCAACTTTATTACAGTATCCTGATC
CTTGTCTTTTATCATTTGGGCCATGTGCTTTGTTCCAAACAAAATAGAAA
TGTGTTCCAATTCTGTATACATTATTACAGACGTTGAGATGAATATGTTA
AAGATGTAAACATGGTAGTTTGAACTAGTTTCAGTAGTAGATTTTTTCCT
ATAGCTCTACTAATGCATGTTTTCTAACGTTCCAGGTCTTCCCTTTCTTA
TTGCCATCATTACCCTTGTTGTGGACGTCCCCAGTACCTATCCTAATGAA
AATGAGACCTATAGGAGCAATAGCATGTAAGTTATGAAATATGACTTTTT
TTCAATAGCAACCATATCGTTTTTTTAATGAATTACGAATGTACTGTTGA
CATTCAGTCTTCTTGATGAATTCAAAATATATGACAGCCGAAATGAAGAA
CAAAACCTTAAATACGGGAAAACGTTGACGGGTATTACCTTCCAATACAC
TAAATCAATCTTAAAACATAGATCTTACTATACCTCATTGAATAATAGTG
GTTCTAAGAAAGTTCCTTTTTTTTGCGCAACTAATATTCTTTGAAATGGA
CTTTAAGGTGCTGTATTGATATAGTAAATAAAGCTGTAACTTAATGTTTT
TTCTGTGTTTGAACAAAAAACCACACTGTAAGGCACTAGGAATTATTGGT
AAGATATGCGAAACTTTAAGATCAACATATGGCAAAGAAAAATGGTTCAA
CCTATACTATTTTCTTTACTGTTTCAAGGAGCGTATACAGTCAGCTTTAG
ATCTCCAGCGTATTCTTTATTGTCACTTTGATACATTATCACCAAAACGA
TATCTGAAATAAATATGGGTTGATCATAGTTGTAAGCTTGAAGGAGACAC
ATTTCGCAAACAACCTCAGTGCCTTTGGGTAAACCTTAAGCTTGTCGATT
AATTCCAACTAGGGTACTGTTTTCTATGTCAATGTAATGTATTTTGATGT
TGTTTAGTTGCTGGCTACAGGGTAACCAGCTGTACTATGGGTTCTTACTG
CCTGTCGGGTTTGTACTTCTGTTCAACTACATCGTGTACATCATGGTCAT
CAGCAAGCTGGTCTGTCGGAGGAGGACCGAAGGTGAGTTCTTAATAGTTG
AACATGAATGCAATATAACGCGTAGAACATATTGTTCTAATGTCCTTTTG
AAATACTGCAAGTTTGATACTTTCAGGATTGTTCAATGTGTAACTATATG
ATGCAGCACACTCTTTTTGTATGCCTTGTTTCTCCGTAAACATTTTGGCA
ACCCTTATTCATATTTCCATGATAATTTACATGCTTTAATGCGTAAGGGG
GTTCACACGAGTGCGCATATATAAGTTTATGGCAAAAAAAGGAGTTTCTT
TATGGGTCGATAACCAAGCTAAATAACGATTGGTCAAAGTAAAAAAAAAC
CACAAAAACGTCTCCCCTAAAACTTATCTTAAAACAGGTCAATACGAAAT
TCTGAAAGCTCCCACCCCTTAACATCACAGTTATCATGGGAATCACGTTT
TTATAGGGAGAGTCTCTGATTCCGGCAGTAGTGCGATAACACAGCAGGTG
CGCATCGCTATTGCTGTCATGGTGCTGGTCGGACTCACCTGGATCTTCGG
CTTCTTCATGATCAGGTAGAGATTCAATCAGATTATAGTAAACATTGTTC
TAGTAGGGATTTAGATATGTGATCCGTCTATAGATATTTAAAGACGATAA
CGCCATTGGTCCAGATCAAAATTCATTATTCTCACATCTGCATTTGATAA
GAGATTTAGATCAATAGAGTATTTCATTGACAACCTGGAAAAGAATACTG
TCCTAAATTGTAATGCAATAAAGTAGCAACTTGATTTCCCGTCTATGCTT
TCTATAAACATTCTGAGCTGTTATTAACTTTCTTAACATATTCACATTAG
CCAAAACTGTATATCTGATAAATACAACACAGCATGTTACAAACGATGTA
ACCTGTATTGATCAGTAAAGAAAAAAAAATCCCTAGCGCAGAACGATGCT
TGACTGTAAGACTAGCATAAACTACTATTTATGTACCTTTTGTTATCATT
TTTGAGAGCAAATTTCATATTCCAGGTATTTATATCGATTTTCGACAAAT
AAAATCGATTTTCGACAAACCAATAGCTTTTATCTAATCACTCTTCTGTT
GCGTTCTAGTGATGGAAGAATCGTGTTCTCCTATCTATTCTGCATATTCA
ACTCACTGCAAGGATTTTTCATCTTCATTTTTCACTGTCTACGACAGAAG
GAAGTCCAAAACATGTGGTTTAA

Coding sequence (CDS) from alignment at Sc0000473:126514..137636+

>Blg13996.0 ID=Blg13996.0|Name=Blg13996.0|organism=Branchiostoma lanceolatum|type=CDS|length=1165bp|location=Sequence derived from alignment at Sc0000473:126514..137636+ (Branchiostoma lanceolatum)
ATGTGCAAGTTCGTCTTAGTTTCATCATTTACCAGAACAGCCGGTTGTTC
CAGTCCAACCAGACAGCTCCTTCCTCAATGGGCACAAAAACCAGGGTCAA
CAGCAGGGTAATTGCGAGTAGATTCACTGGCATTGAACTCAAGAATCTAT
CGATACCAGTAGTGACAAGATACCTTCCTATTATTCAAAACAGCGCAAAC
AATACTGTCAAGGACATAAGATGTGTTTCCTGGGACATTGATGCTGAAGA
AGGGGTTGGCTCTTGGTCAACATCAGGATGTGACTTTGTTGGGATTGACG
ATGGCAGGGTGGTGTGTAATTGCAGCCATCTTACCAATTTCGCTGTTTTG
ATGGATATCTACGAGGGCCTGCACAGCTCTGCACTGGACATCATCAGTAA
GGTTGGGATTGCCTTGTCAATTACAGGCCTCGTCCTTACTATTATCAGCT
ACCTGATATTCAAGGAGCTTCGTCAGACAAGGCCACAGCACATCCTTGTA
AACCTTTGCGTCGCCTTGCTGGCAACTCTCATCATATTCCTGGCTGGCAT
TGAAGCTACCAACTCCCCTGTTGGCTGTACCGTCGTGGCGTTTTTCCTAC
ACTACTTCCTCTTGGCTGTGTTTATGTGGATGGCCGTTGAAGCCTTCAAC
ATGTACCTGGCATTTGTGAAAGTTTTGGGGGCACATGTATCCAAACTTCT
TCTTAAGGCGGCTATCTTTGCATGGGGTCTTCCCTTTCTTATTGCCATCA
TTACCCTTGTTGTGGACGTCCCCAGTACCTATCCTAATGAAAATGAGACC
TATAGGAGCAATAGCATTTGCTGGCTACAGGGTAACCAGCTGTACTATGG
GTTCTTACTGCCTGTCGGGTTTGTACTTCTGTTCAACTACATCGTGTACA
TCATGGTCATCAGCAAGCTGGTCTGTCGGAGGAGGACCGAAGGGAGAGTC
TCTGATTCCGGCAGTAGTGCGATAACACAGCAGGTGCGCATCGCTATTGC
TGTCATGGTGCTGGTCGGACTCACCTGGATCTTCGGCTTCTTCATGATCA
GTGATGGAAGAATCGTGTTCTCCTATCTATTCTGCATATTCAACTCACTG
CAAGGATTTTTCATCTTCATTTTTCACTGTCTACGACAGAAGGAAGTCCA
AAACATGTGGTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg13996.0Blg13996.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg13996.0-exon-Sc0000473-1570713199:126514..126695Blg13996.0-exon-Sc0000473-1570713199:126514..126695Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:127078..127248Blg13996.0-exon-Sc0000473-1570713199:127078..127248Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:134194..134303Blg13996.0-exon-Sc0000473-1570713199:134194..134303Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:134868..135130Blg13996.0-exon-Sc0000473-1570713199:134868..135130Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:135549..135639Blg13996.0-exon-Sc0000473-1570713199:135549..135639Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:136321..136445Blg13996.0-exon-Sc0000473-1570713199:136321..136445Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:136870..136978Blg13996.0-exon-Sc0000473-1570713199:136870..136978Branchiostoma lanceolatumexon
Blg13996.0-exon-Sc0000473-1570713199:137523..137636Blg13996.0-exon-Sc0000473-1570713199:137523..137636Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000473genomeSc0000473:126514..137636 +
Properties
Property NameValue
GeneIDBlg13996