Blg03446.0 (mRNA) - B. lanceolatum

Overview
NameBlg03446.0
Unique NameBlg03446.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at xpSc0039671:235983..241597+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg03446.0 ID=Blg03446.0|Name=Blg03446.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5615bp|location=Sequence derived from alignment at xpSc0039671:235983..241597+ (Branchiostoma lanceolatum)
TCAAAACTCATTACCACAAACTTTTATTATGGACAAATATGCAAATTATA AATCTTTTAACAGTCAGAAGTGCAATATATATCCTATGAGTTGAAAGTAT CTCCTATGAGTTTGAAGAATGCAGTTTGCCCAATGATACTGAGGAAAAAT TGACAATCAAGTTTTTTAACACAGTCTAAAAAGTCTTTAACGACCAAGAA ACAAACCCTGCCGGCTTCACAATGAATTCCAAACTTCCCAAGAGTTTCCG GACTGTGATTCTGTGCTCGTTAGCGAACTTCGTTAACCAGGCGGACCGTA CCATCATGCCGATCGCGCTCGTGCCGATGAGCAACGAGTTTGACTGGAAC CTGCAGGCTCAGGGCTGGATACTGAGCTCATTCGCCTTCGGATACATCAG TAGTCAGGTAAGGGCCTCGGGGGAGCCTGGAGTCAGGCTATAACACATAG ACTGGTACCTACAGGTACATTAGGATACATACATGTAAGCAGTCAAGTAA GAAGTATGAAATGTAAGAAAGTTTCTTTTGGACACAACATGTATGATCAA ACAAAATGGTATAATTGTGATCATGAATTATTAATGTAAATGTTATAAGT CTGTATATATGGTACTGATTACTCTGACTTTGCTGTGTGCTGCCCCCTGT AGGTTATCGGCGGAAGTGCAGCCCTGCTGGTCCCTAACAGTAACGTTGTG TGTGCTGCCCCCTGTAGGTTATCGGCAGAAGTGCAGCCCTGCTGGTCCCT AACAGTAACGTTGTGTGTGCTGCCCCCTGTAGGTTATCGGCAGAAGTGCA GCCCTGCTGGTCCCTAACAGTAACGTTGTGTGTGCTGCCCCCTGTAGGTT ATCGGCAGAAGTGCAGCCCTGCTGGTCCCTAACAGTAACGTTGTGTGTGC TGCCCCCTGTAGGTTATCGGCAGAAGTGCAGCCCTGCTGGTCCCTAACAG TAACGTTGTGTGTGCTGCCCCCTGTAGGTTATCGGCAGAAGTGCAGCCCT GCTGGTCCCTAACAGTAACGTTGTGTGTGCTGCCCCCTGTAGGTTATCGG CAGAAGTGCAGCCCTGCTGGTCCCTAACAGTAACGTTCTGTGTGCTGCCC CCTGTAGGTTATCGGCGGAAGTGCAGCCCGGCGGTGGGGAGGGAAGTGGG TTCTGTCTGGTCCCTAACAGTAACAGTCTGTGTGCTGCCCCCTGTAGGTT ATCGGCGGAAGTGCAGCCCGGCGGTGGGGAGGCAAGTGGGTTCTGGGATT CGCCGTCGCCGTGTGGTCCCTGGCGACCTTCTTCACGCCGACCTTCGCGC GGACGCTCTACGGTCTGATCTTCGCCCGGATCTGCCTGGGGTTCGCGGAG GGGCTCGGGCTGCCGACGATTTTCCACATCTTCGCAAACACGGTTCCGAT GGAGGAGCGGTCGCGGGCGTTCGGCTACCTGGTGGCGTCCGGGTCTATCG GACAGACGCTCGCTTCTGTGGTGAGTTCTAGGTTATGGGAGGCGTTTTAC TATAGTTATATATGAGGGCCTGCATGGGGGGGTCCCGACAACACTCTATG CTAAATTCGGAGGGCCGGCTACGTAATACGCTAAACTCAGAAAGCCTCCC TACGCTCTACGCTAAATTATGGAGTGGTCGGCAACGCTCTACGTAAAATT AAAACGGCCGATTACGCTCTAAGTAAAAGGGGCATGCAGGCCCTCATATA TTAGTGTTGAGGACAAGAGTAGGAGTGATAAGACAAAAACTGATATGTTT GTTCATGAAGTTGACAAATACAGGTTGGCTGGCTGTATAACTTTACTAGT AGGTCTTTAGAATGTGACTTTTTAATGACAGCTGGCAGCAGAAAAATCGA TTTTATGGAATGAGCCTCAAATCTTGTGTTGTCTGACTAACATCTCAGAA TTAAATACTACTTTTATTCATGGTTTTTTCAAGTACCAGAACTGAAATAT AAAAGTACAGACGCTAAATAACCTTGAAGATGACAAGCTTTTGTAGTTTT TGACAGTTTGATGTTGTACTTGCGCCCTCTTGCAGGTGTGCCCCAGACTG CAGTGGCCCATGATGTTCTACAGTTTCGGGGTTCTGGGGTTCGTGTGGGT CGCCACATGGGTTCTCTGCTTCAGGGAGCAGTCCATCGACTACGATGAAG AACTCTTCCTTCCGCCCAAGGTAAAAAACTTGCTCCACTTTTCTTTCTTG TGTTTGTAAGAGCAATGGGGTCCTTGGTAAAAGTCATAGCCAGGAACACA GACTTGTTCAGCTTTGGTCAACTTTGGTCCACAGGATAACAAAGTGAAGC AAAGCTGAGTAAAAACTCTGAGGTAGGGAGAATCTTGGGCCACTCTAAGT TATACGTCAGTTCTTCATTTTTTTTTTCAACCAAGATGGCAGTGTGTCGA TGAAGGTTAGACATCCAAGATAAAAAACTTCTTACTCTACTTTTCTTGTG TGTGTTAGAGTGTTCGCCAGGTGCCCAGCCTTGTTCAGCTTTGGTCCACA GGATAACAAAGTGAAGCAAAGCAGAGTAAAAACTACCTAGGTGGGGAGAA TCTTGGGCCACTCCAAATCAATGCCTTGGTTCTACATTTGTTTTTGGCAA CCAAGATGGTAACTTGTGTCGATGAAGGTTAGACATCCAGGTAATACGAT ATGCCAAATAACAGTTACTCAAGCAACTGGATATGATTTTGGATGTGATT TTCCAAAATCATATCCAGTTGCTTGAGTAACTGTTATTTGGTGCAAGATG GTGGTGGTGGTGGGTGGCAAGGTAGGTTTGCGTAAGTTAAGTGACCAAAA GTTCTTGTCCTTCCCTCACTCCCCCCAGACAGCTGGAGCAGATACGGCGG ATCCGCCCGTGCAGAAAACACCCAAGAAAAAGGTGCTTAGCAACCGACCA ATCAGGACTCTGAGGTGTCGAATCATATGATTGGTGGAGGGGCTAATTTT TCTGCTTGGGGGTGTTATGTGCTTTTACCTTTTCCTTCCTGGTTTGGTTT TCTGTTGATAGAACAGGTGCAGGTGGTGCATGGTGTGAGGCAAAAGGTTT GTGGGAAATGTAATGAAAGGGTGATTTCTTTTAACCTTCTCCCTGCTGAA GTTCCCGTTCGGAACAAATTTTGTATTGGTTACAGGGTAAGGTAGCAGGG AGGAGGTTAAAAAGTTAACCCTGTTTGTTGTGCCCTTCCTACATAGATCC TGACCTCTAACCTCTGTGCCTCCTGCAGATCCTGACCTCTAGCTTCTGGT CCTTCTGTGGATTCTGAACTCTAACCTCTGTACCTTCTGCAGATCCTGAC CTCTAACCTCTGTGCCCCTGCAGATCCTGACCTCTAACCTGCGGTGGGTG GAGTTCATCTCCCATTGGCCGCTGTGGGCGATCTACTCGGCGCACTTCGC CATGAACTGGAGTAACTACGTGGTCCTGTCGTGGCTCCCGACGTACCTGC AGCGCGCGCTCGGAGCCAACGCCAACGACATCAGCTTCACCGCGTTTCCC TACATGATGAACTCGCTCGTCGGCGTGGGTAAGTAGCTAACGACATCAGC TTCACCGCGTTTCCCTACATGATGAACTCTCTCGTCGGCGTGGGTTAGTA GACTTGCCTTGCACTGTTGTTCTGCCTTCTGCGTGTTGATACTTGATCAG TGACAGGCTTCAGTCTGAATAAACTTTATTAGTTCATTGATCTGCAACTG GAACTTTGACATAACTGAAGTTGAATACACTCATTTATGCCTCAGGATGA AATTTGCATGGGTATTTTATGACCAAATCCTATCAATGTATCTGTCCCTA ATGCAGCAGCTTGTACTAACTCTACATATAAAGCAGGTGCATTGTGTCAT GTGCTGGTATTACCCAGGCTAATTCTGGGTTCCAGTATCTTCTTTCTAAT AAAGGAATCTTTTATTTGGTTTTATCTGTTTTTTTATGTAATCCGTACCT CCTTACCCCCAGGTGCGGGCCACATGTCGGACTGGCTGGTGTCCCGTAAG AACTGGACGGTTCTGTCCGTGCGGCGGCTGATGACGAGTATCGGGTTACT GGGGCCGGCCGTGTTCATCCTGGCATTCAGCACAACCAACAACCTCATCG TGGCACTGCTGTGAGTTTTTTTTTCTCTTCTGAATAACCGAAACAACCAA CACTTCATATGTAAAACCTCATCTGAATGAACCATGTGTAGGAAATGTAG GAGTTTTCAATGCATCTCAATTGATTCAGGCCATAACTATGTCATGTTTT TCCTGGTCCTCTGTACCACCATTTTGTTGACCTTGACCTGTACCCTTTGC CCCCTACCCCAGGCTGGTGTCGGTGTCCATGGGTCTGTGTGCGTGCAACT CCTCGGGTCACATGAGTAACCATGCCGACGTAGCGCCCAACCACGCCGGG ATCACCTTCGCTGTTTCCAACACCATGGTAGGTCAACCCCCCCACACACT CACATACAAGCACGCACTCACACGCACACACACACACACATACGCACTCA CATGCACACACAACCATGCCGGGATCACCTTCGCGGTCTCCAACACTATG GTAGGTCCAACACACATACACATACATACTCCCAACCACGCTGGGAGCAC CTTCGCGGTCTCAAACACTATGGTAGGTCAAACACAAACACACATACCCA TGTATGCATGCACCCACACCCAACCACGCCGGGATCACCTTCGCTGTCTC CAACACTATGGTAGGTCCAACACACATGCACATGAACATGCATGCATGCA CGCACGCATACACCCACACCCACACCAGGATTGCATTTGCTGTCTCAAAC ACTATGATACAACTGGGGTTCTTTTATCTTATGATCTTCAGCACAAACTG ACTTATGTTCACAAAGCATACAAGATCAACATGTATTTACACATACAACA AATAAAAGAAGAGTCATGTGCCAGTCTAACAGACGTTTCTTATTCCACAC ACACAGGCACATAAAGATTCTCAGTTCTGCAATATTTTGAGGGCTAGTAT TGCAGGCATCCCACACAGCCCTGTTAAGCCATGCTTTGGCAACACAACAC CATGTACAAGATCAATCCTTAACCCTGCTGTCCCCCTCCCCCTTGTAGGC TAGTATCCCAGGCATCGCCCACGGGCCCGTCACAGCGACCCTGGTGACGG CCACAGGACACTGGTACCCGGTCTTCATGGTGGCAGCTGGAGTCAACATG GTGGGGGCGATGGTCTATGCCTCACAGAGCTCCGCTAGCCAGGTGCTCTA GCACATGTACACCTGCTGTACACACCTGTGTCACCTGCCAGGTGCTCTAG CACACCTGTAGCTCCTGGTTGGTCCATCGTACAGGTGTACCAGGCAGGTA CTCTGAAAACTGTCAATGTTCATCATGTACAGCTGCTCACCTTTCCAGGT GCTTTCATGTAGCTGTAGATAACTTTAGGTTTTGAAAAATACACCTGTAG CACCTGTACAGCTGCAAGACAACAGTCAGCCAGGTGCTCTGAAAACTTCA GCTGTTCACCATGCACAGCTGCTTTTTTGTCCAGGTGCTACTGTGTAGCT GTATGGAACACTGGCATCTTTGTGTTGGGAAAGCTCTGACTAGAATATGT TTTAATCTTACTCTT

Coding sequence (CDS) from alignment at xpSc0039671:235983..241597+

>Blg03446.0 ID=Blg03446.0|Name=Blg03446.0|organism=Branchiostoma lanceolatum|type=CDS|length=1269bp|location=Sequence derived from alignment at xpSc0039671:235983..241597+ (Branchiostoma lanceolatum)
ATGAATTCCAAACTTCCCAAGAGTTTCCGGACTGTGATTCTGTGCTCGTT
AGCGAACTTCGTTAACCAGGCGGACCGTACCATCATGCCGATCGCGCTCG
TGCCGATGAGCAACGAGTTTGACTGGAACCTGCAGGCTCAGGGCTGGATA
CTGAGCTCATTCGCCTTCGGATACATCAGTAGTCAGGTTATCGGCGGAAG
TGCAGCCCGGCGGTGGGGAGGCAAGTGGGTTCTGGGATTCGCCGTCGCCG
TGTGGTCCCTGGCGACCTTCTTCACGCCGACCTTCGCGCGGACGCTCTAC
GGTCTGATCTTCGCCCGGATCTGCCTGGGGTTCGCGGAGGGGCTCGGGCT
GCCGACGATTTTCCACATCTTCGCAAACACGGTTCCGATGGAGGAGCGGT
CGCGGGCGTTCGGCTACCTGGTGGCGTCCGGGTCTATCGGACAGACGCTC
GCTTCTGTGGTGTGCCCCAGACTGCAGTGGCCCATGATGTTCTACAGTTT
CGGGGTTCTGGGGTTCGTGTGGGTCGCCACATGGGTTCTCTGCTTCAGGG
AGCAGTCCATCGACTACGATGAAGAACTCTTCCTTCCGCCCAAGACAGCT
GGAGCAGATACGGCGGATCCGCCCGTGCAGAAAACACCCAAGAAAAAGAT
CCTGACCTCTAACCTGCGGTGGGTGGAGTTCATCTCCCATTGGCCGCTGT
GGGCGATCTACTCGGCGCACTTCGCCATGAACTGGAGTAACTACGTGGTC
CTGTCGTGGCTCCCGACGTACCTGCAGCGCGCGCTCGGAGCCAACGCCAA
CGACATCAGCTTCACCGCGTTTCCCTACATGATGAACTCTCTCGTCGGCG
TGGGTGCGGGCCACATGTCGGACTGGCTGGTGTCCCGTAAGAACTGGACG
GTTCTGTCCGTGCGGCGGCTGATGACGAGTATCGGGTTACTGGGGCCGGC
CGTGTTCATCCTGGCATTCAGCACAACCAACAACCTCATCGTGGCACTGC
TGCTGGTGTCGGTGTCCATGGGTCTGTGTGCGTGCAACTCCTCGGGTCAC
ATGAGTAACCATGCCGACGTAGCGCCCAACCACGCCGGGATCACCTTCGC
TGTTTCCAACACCATGGCTAGTATCCCAGGCATCGCCCACGGGCCCGTCA
CAGCGACCCTGGTGACGGCCACAGGACACTGGTACCCGGTCTTCATGGTG
GCAGCTGGAGTCAACATGGTGGGGGCGATGGTCTATGCCTCACAGAGCTC
CGCTAGCCAGGTGCTCTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg03446.0-exon-xpSc0039671-1570713199:235983..236389Blg03446.0-exon-xpSc0039671-1570713199:235983..236389Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:237180..237452Blg03446.0-exon-xpSc0039671-1570713199:237180..237452Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:238018..238152Blg03446.0-exon-xpSc0039671-1570713199:238018..238152Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:238811..238864Blg03446.0-exon-xpSc0039671-1570713199:238811..238864Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:239306..239461Blg03446.0-exon-xpSc0039671-1570713199:239306..239461Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:239527..239575Blg03446.0-exon-xpSc0039671-1570713199:239527..239575Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:239945..240092Blg03446.0-exon-xpSc0039671-1570713199:239945..240092Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:240295..240409Blg03446.0-exon-xpSc0039671-1570713199:240295..240409Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:241081..241325Blg03446.0-exon-xpSc0039671-1570713199:241081..241325Branchiostoma lanceolatumexon
Blg03446.0-exon-xpSc0039671-1570713199:241462..241597Blg03446.0-exon-xpSc0039671-1570713199:241462..241597Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg03446.0Blg03446.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039671genomexpSc0039671:235983..241597 +
Properties
Property NameValue
GeneIDBlg03446