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Sequence
The following sequences are available for this feature:
mRNA from alignment at xpSc0039671:34209..40815+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Blg03437.2 ID=Blg03437.2|Name=Blg03437.2|organism=Branchiostoma lanceolatum|type=mRNA|length=6607bp|location=Sequence derived from alignment at xpSc0039671:34209..40815+ (Branchiostoma lanceolatum)
ATTGGATGGCTTCTCGGTGTGCTGAATTTTTGGTGTCTTCCACCGACTAT
ATGAAATACAACTTTTATTCTTATCTGCTTCTGTTTGGCTCTAAATAGTT
TGCATAGCAAAATGTAAAACGTTCACTGTAAAAAGTTGCACTGTTCTATC
ACAACAGCAAGAAACCCAATTGACATCGGTAGATTGAACTGACCAATGAG
AGCTTAGTTTACCTGCCTAACTATTGACCCCAGCAGTTAATTTATGCGGG
TGCTCATAGCAACATCAACATTAGCTTTCTGGACTTTTGAGCGATTTTGG
GGAGACTTCTGTGGCCATTTCCAGAGTTTTCCAGCATGTCAGCGTCAGCC
AAGGGAAGGAGTAAGGCGCCCAGCATGGCAGGGTGCGGAAAGGCCGAGTT
TTACTCGTTTTCACTTTCTTGGATCGGGATCGAACGCCTGTTCCTAGTAG
TGTAGTGGCACGTATGGGGGAGGGGGGCATCGCGAGGAACATGTTTTGAG
TAGAGTACAGTAGAGTAGAATTGTACGTAGCTTACCGAAGTGGGCGTAAG
TCACACTGTGGTTTTCTTTATGTGCAAGCCTTAGTTTTGGCCAAAGTCCA
TGTTTCTGTTTTTCGCAAGTTGTCATTTGTTAACCAAGACCGTGCCTAGC
CTCAAGGACTAAACTCTCTGTCTCTCTTGTAAAACTAAAAGTTTTCTACT
TATTATAGATATGACAAAAATAATTATTTAGCCTGGAATCCAGACCTATT
ATAGCTCCCGAGTCTCTCTCCGCAAATAGCAAATATTTGCGGAGAGAGAC
TCGGGAGCTATAATAGGTCTGGATTCCAGGCTAAATAATTATAGCCACGT
ACCTGTCAATAGTTTTAACCTTCACCCCGTAACCATTACAAATTCGGTGC
CAAACAGCTACCTTATAATTACTGGATGTAAATCCTACCTGACCGAAGAC
TCTACTCTACTATACTCTTACACGCAGGCTGAAGGTTGAAAAAGTGTTGA
CAAGATAGGTGTCAGCCAATCATAGCCCCGTTTGTTTGTTTGTTTGCTTT
TGCGGCTCTGTTGTAATACTTGTGACACTGTACATGAGGATGACATGTAC
ACCTTGGCAGAGTTTTAGGCAGTCATGTGTCTCAGTAAGCCAGCCGTGTG
GACCTGAGCACTTTAAGTTTCAGTGCAGCGACAACAGGACTGCAGACCAA
GATCAGAAACTGTTGGGCCATGTTGCTATATATCCTCCACACTAATGCCC
AGTGAGTTTAGCTTATACATCACAGCAAGGCCCAGTCCAGAAGTGAGTCG
GAACACATCCATTCAACAGTTCATTATTCCAGCTCAGGGATGTCAGATGA
GCACACCAAGAGCTCCATGATGTTGTGACCATGTGTGTTTATTTCTGTGT
TTATTTGTTTGTTTGTTAGGGGTGCTCCCCAGAAGAGCATGCTCCGCAGC
ACGTTCCAGCACACCAAGAGCTCCATGATGGTGGGCTCCACGCGCAGCCA
GGTCGCGGGGTCAAGCAGCAAGAAGAGCGTGGTGTTGGATGATGGGAAGG
GTGGGGTGACGCAGCGCAGCAAGGGGCCAAATGTGGTTGTCCTTGATGAC
GCGGGGAACGACGTGACGCCCCAGCCGCTGCTGGCCGTGGACCCGAACGC
GCCGCATCACACGCAGAGCAAGCTGTTCGGGCAGGGCGGCACCGACTCAT
CATCTGTGGGAACTGTGAGTAGGGCGGGGTCCTATCAGAGGGCTTCTTAC
AACAGCTTTGTTACAGCTGGGTCCTGTCAGAGGGCTTCTTACAACAGCTT
AATTTGTTACAGCTGGGGTGACGGTCCTATCAGCTTTGTTACAGCTGGGG
CCTATCAGAAATCTTGTTGCAGTTGGTTACATTCTAGTCCGGCCAATCAG
AAATATTCTACAGATTCTGAACTTAGTATCCCAGTCCGGCCAATCAGAGA
TCTTCTCACAGTAGTTAACATCCCAGTCTGGCCAATCAGAAATCTTGTTA
CAGTACAGTAGTTACAACCCTTTCCAGCCAATCAGATTTGTTACAGTACT
AGTACAGTAGTTACAACCCTGTCCAGCCAATCAGAGATCTTGTTACATTA
GTTTTGTCTCTGTCCAGCCAAACAAATCTTCTCACAGTAGTTTACATCCC
AGTCAGTCCAATTAGAAATCTTGTTACAATAGCTTTCATCCCTGACCTAA
TTACTAGTAATCAAAAGTTTCTTCCCTGACTAGCCTCTTAGATTTCTTGC
TTGTTTGTTTGTTTGTTCAGCCCACTGACTTCATGTCGCAGGCTTCCATC
TACCAGACTGGCACAGGAACGGCCAGCGTGTTCGGCGCTCCTTTCTCCAG
GTCAGTATCAAATAATAACTTAAAGATAACAGTTGGAAACTACAGATTAC
GGCCGAATCCGAACAGCTCCTTTCCCCAATCTTGAAATGCTTCAGAAAAT
CAAGATTTGGTGTATTGGTACCGTCATGACCCCATTTTCACACCTTTCCA
ACCAGTTTGTAGTAAATGTATTCATCACGGAGACATGATGGTGTATGCAG
TTTTGATAATGACCTTCAAGTTGTTATTTTCATGTTGAGACTCTAGAGAA
ACCCTTATCATTCTAAAACAAGTGGGGCTCTTCGTCTTCCACTGCCTCCA
ACATAGAAGTCAAACCCAGCTTGTGTAGATATTGCCAACGCTATTATGGA
GTAATCAAAGTATGTTAGGGTTAGTCACAGTTCCACGGGCAAGAACTGGC
AATACATTAGTTTTCATATCATTTCTCCCCTCAGGTCGGTGATGGGCAGC
GTCTCTCGGATCTCCGGACAGTCCACAGCAACAGACCAGTCCTTCGGCGA
CGAAATCTCGGAGGCGGGATCCCACGACCTTGCCCCTGGGCTGTCCAGTA
AGTCATGACCTTGCCCCTGGGCTGTCCAGTAGGTCACGACCTTGACCCTG
GGCCGGAAAACAGCCGGAGAACAATAACGTAGCAAACTTTGCTAAGGGGT
TAACTACACGTAAAGAGTTAAGAATTAAATATTTTAGCTACTCACAGAGA
ATAAGTTTGTTTGTTTGTGAAGGTGTGAAGACGCGGCGTGAGGAAGTGAA
GGAGATTCTGACGGAGGCAGATCTGGATCTCTCAGTGCCGATCCGGCTGA
CGGAGAGCGACACGATCTGGATCCTGGATCTGGTCGGGACGTGCGTAGCC
AACGACAGCGAGAACGCGGACGGGATCCGGGCCAGGAATGAGAAGTACAA
GGAGGTGAGATCTCTTAGATCTGGGATCACAACTCTTAGATCTGGGATCA
CAACTCTTAGATCTGGGATCACAACTCTTAGATCTGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAACTTTCACTGCTGTAACTACACCTGTCTGTGC
AGGCAGTGCAGGTAATATTGTACAGGACACAGGCGTCCATGCCTCGGTAT
GGTTTGTGTGCTGTTGTTGAATTATTTGCATGCTATTCTTGTATGAGAAG
TAGGAGACAACAACTAACAGGACCACTCGCAAACAACTGAGCTTTATCAA
ACGAGAGAACGGGATTGGCTGTTATATGTTCAAACAGCCGGTACCAGATA
ACGTCTAGTAGTACATACTATAGAATCGCGTTCGAGATTACGTCTATGTA
CTATAGAGTCCTACACTTGAATGCACTGTTCCTGTACTGTTGTTTGTTCT
GTTTCAGGACACGGGCATCAATGCCTCCGAGTGGGACATGCATGACACTT
ATCAGGACCTGGCAGCTAAAGACAAGGGTAAGAGTCTCCAAGTTGAAAAT
AACAAAATAAAAAATGATCTTTTGTTGCACAACTTCCGCATGTGAAATTC
GCGGACCCTGTTTGTGTATCAATGTGAACGTTTGATGCCGTAACTCTCTC
CTCTGCCCGCTCCCCTGCAGAAAAGTCGGGAGAGGCAGACGCGGACCAGG
ACCTGATCAGCCGACCCACCAGCAAGAAGGCCGACCTGGAGGAGACTTCT
GTGGAGGGGTCAATGCGGCAAGGGTCGGCTCTGTCGGGGCAAAGTGGGAG
GGGTGAGTTTTATAAGGGTCGGCTCTGTCGGGGCACAGTGGGAGGGGTGA
GTTCTATAAGGGTCGGCTCTGTCGGGGCAAAGTGGGAGGGGTGAGTTTTA
TAAGGGTCGGCTCTGTCGGGGCAAAGTGGGAGGGGTGAGTTCTATAAGGG
TCGGCTCTGTCGGGGCAAAGTGGGAGGGGTGAGTTCTATAAGGGTCGGCT
CTGTCGGGGCAAAGTGGGAGGGGTGAGTTTTATAAGGGTCGGCTCTGTCG
GGGCACAGTGGGAGGGGTGAGTTCTATAAGGGTCGGCTCTGTCGGGGCAA
AGTGGGAGGGGTGAGTTTTATAAGGGTCGGCTCTGTCGGGGCANACCCAC
AGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAAC
CCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTAC
AAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCA
GTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAG
GTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCC
ACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAA
ACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGT
ACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGT
CAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCAC
AGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAAC
CCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTAC
AAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCA
GTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAG
GTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCC
ACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAA
ACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGT
ACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGT
CAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCAC
AGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAAC
CCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTAC
AAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCA
GTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAG
GTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCC
ACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAA
ACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGT
ACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGT
CAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACTGAT
GAAACTGCTTCTAAAACCTTGCTGTAACTAGACTATGGCCAAATTTGCAG
ATCAGTACAAACTCACAGGTCAGCAAAACTGTCTCTCATTGATATATAAA
ACTCTACTGTAAGTAACCACACCATAGACAGTCACAGGTGATGAACATGC
TCTTTGTTTTAACTTAATGTTCTGTTCTGGGATTCATGGCAACAGTAATG
TGCACTGTTGTCTAGACAGTCCAGTGCGTCTTCCTGCCCGTTGGATGATG
ATTGTGATGATTAGTGATGGTGATGATGATGTGTGATGATGGTAAGTGAT
TGTGATGGTTAGTGCTGATGCTGATGCTGATGCTGTTCTGTACACCCCCC
ACCCCCCAGACGTGGACCGTGAGGTTCCGGACGAGCCCCCTCCCACGGCC
GGCTCCATGTCCATCACACAGATGGGCCCCAACCTGGAGCGGCTCTGGAT
CTACCACTGCGAGCTGACGGACGGCAGGAACGTCAGCTGCCTGTCCTGGA
ACAAGGCAAACCCGGTCAGTAAACAAACAAACAAACAGACAAACATAGAA
ACCCAGTAGGTGCAATAGAACATGTATGTCCTGGTCAGTGGCCTAACCTA
ACTGTACCCTACCTTGAATGTTTTTTTGAAAAATATTTATTGTTACAGAA
ATGCTAA Coding sequence (CDS) from alignment at xpSc0039671:34209..40815+ >Blg03437.2 ID=Blg03437.2|Name=Blg03437.2|organism=Branchiostoma lanceolatum|type=CDS|length=2349bp|location=Sequence derived from alignment at xpSc0039671:34209..40815+ (Branchiostoma lanceolatum)
ATGCTCCGCAGCACGTTCCAGCACACCAAGAGCTCCATGATGGTGGGCTC
CACGCGCAGCCAGGTCGCGGGGTCAAGCAGCAAGAAGAGCGTGGTGTTGG
ATGATGGGAAGGGTGGGGTGACGCAGCGCAGCAAGGGGCCAAATGTGGTT
GTCCTTGATGACGCGGGGAACGACGTGACGCCCCAGCCGCTGCTGGCCGT
GGACCCGAACGCGCCGCATCACACGCAGAGCAAGCTGTTCGGGCAGGGCG
GCACCGACTCATCATCTGTGGGAACTCCCACTGACTTCATGTCGCAGGCT
TCCATCTACCAGACTGGCACAGGAACGGCCAGCGTGTTCGGCGCTCCTTT
CTCCAGGTCGGTGATGGGCAGCGTCTCTCGGATCTCCGGACAGTCCACAG
CAACAGACCAGTCCTTCGGCGACGAAATCTCGGAGGCGGGATCCCACGAC
CTTGCCCCTGGGCTGTCCAGTGTGAAGACGCGGCGTGAGGAAGTGAAGGA
GATTCTGACGGAGGCAGATCTGGATCTCTCAGTGCCGATCCGGCTGACGG
AGAGCGACACGATCTGGATCCTGGATCTGGTCGGGACGTGCGTAGCCAAC
GACAGCGAGAACGCGGACGGGATCCGGGCCAGGAATGAGAAGTACAAGGA
GGACACGGGCATCAATGCCTCCGAGTGGGACATGCATGACACTTATCAGG
ACCTGGCAGCTAAAGACAAGGAAAAGTCGGGAGAGGCAGACGCGGACCAG
GACCTGATCAGCCGACCCACCAGCAAGAAGGCCGACCTGGAGGAGACTTC
TGTGGAGGGGTCAATGCGGCAAGGGTCGGCTCTGTCGGGGCAAAGTGGGA
GGGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAA
CCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTA
CAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTC
AGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACA
GGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACC
CACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACA
AACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAG
TACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGG
TCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCA
CAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAA
CCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTA
CAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTC
AGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACA
GGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACC
CACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACA
AACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAG
TACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGG
TCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCA
CAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAA
CCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTA
CAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTC
AGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACA
GGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACC
CACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACA
AACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGGTCAG
TACAAACCCACAGGTCAGTACAAACCCACAGGTCAGTACAAACCCACAGG
TCAGTACAAACCCACAGGTCAGTACAAACCCACAGACGTGGACCGTGAGG
TTCCGGACGAGCCCCCTCCCACGGCCGGCTCCATGTCCATCACACAGATG
GGCCCCAACCTGGAGCGGCTCTGGATCTACCACTGCGAGCTGACGGACGG
CAGGAACGTCAGCTGCCTGTCCTGGAACAAGGCAAACCCGAAATGCTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Blg03437.2-exon-xpSc0039671-1570713199:34209..34730 | Blg03437.2-exon-xpSc0039671-1570713199:34209..34730 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:35628..35922 | Blg03437.2-exon-xpSc0039671-1570713199:35628..35922 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:36479..36558 | Blg03437.2-exon-xpSc0039671-1570713199:36479..36558 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:36993..37105 | Blg03437.2-exon-xpSc0039671-1570713199:36993..37105 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:37281..37462 | Blg03437.2-exon-xpSc0039671-1570713199:37281..37462 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:38116..38185 | Blg03437.2-exon-xpSc0039671-1570713199:38116..38185 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:38329..38460 | Blg03437.2-exon-xpSc0039671-1570713199:38329..38460 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:38811..40142 | Blg03437.2-exon-xpSc0039671-1570713199:38811..40142 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:40518..40672 | Blg03437.2-exon-xpSc0039671-1570713199:40518..40672 | Branchiostoma lanceolatum | exon |
| Blg03437.2-exon-xpSc0039671-1570713199:40807..40815 | Blg03437.2-exon-xpSc0039671-1570713199:40807..40815 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039671 | genome | xpSc0039671:34209..40815 + |
Properties
| Property Name | Value |
|---|
| GeneID | Blg03437 |
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