Blg03407.1 (mRNA) - B. lanceolatum

Overview
NameBlg03407.1
Unique NameBlg03407.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000130:528068..537810+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg03407.1 ID=Blg03407.1|Name=Blg03407.1|organism=Branchiostoma lanceolatum|type=mRNA|length=9743bp|location=Sequence derived from alignment at Sc0000130:528068..537810+ (Branchiostoma lanceolatum)
CTTTGCAGTGTTCACGTGTGACGGACAGGTGAATGAAAATTATATTTACT ACAGATATGCCTGATGTTCCCAGTTCCTATAGAGTAGAGTAGAGTTTCTT CGGCCTATGCTAAATTTCAGTATTGTCTGCTTTGTGTTCAATGAAAGGGA ATAGATTACCACTCAGTTTCAAACAGTCGTGATCATTCAGACCAAGGACT GGTTATATAACGTATATAACCTCCTTGTTCAGACCGGCGTCTTCCCACTC ATCATGACTAGGCAGATTAGATCAGGGATCGTCCAATGATGTTAACCTTT ACAACTGACGCATTCCTAAGGTTTCTCATTTAACGTTAATGGTTAACTTA AAGGTTTGATCCAATCAAAATTTTCGTTACGTGCGGTGGGTGAGTCTTCA TCGAGCTCGCGAGGTGTAACTATCCGCCAGAAGAGTTCGGAGACCTCATA CCTCCATGAAATAAATAGAGCTTTAATTAGTAAATTTCTTGTTTTATCTC GTGCATATTATTATGCAACTAGAGTTCCACGACCTCATACCTTCGCCGAC TGATGTTAGCCTTTTCGAGTGAATGCTTATCACTCAGTATGAAAATAAGG TCCTCGATTGCATGAATTTCAAGTGATCCTTTTCTCTACACAAAACACAG CATTAAAGTAAAATCTTAGAAAAGAGGGCCTTTGTAGCATTTCCTCATAT ATTATGTAAATGAGGCCATCATGATTTATGTCTGATAACGTCCACATTTG ATTNTAGTATGAACGGGGTGTATATATTGCTGTCGCCTTAGATTCGTGTA TCGCGCTGCCTGACAGTGTCGCGACGCTCGCGCTGCCTGTTGTTGCGACG CTCGCGCTGCCTGTTGTCGCGACGCTCGCGCTGCCTGCCAGTGTCGCGAC GCTCGCGCTGCCTGGTGTCGCGACGCTCGCGCTGCCTGTTCGCTACTCAC ACACCGATTGTACCATTTGGTCTTTCGTAGGTTTGAAGTCAAGTGACCTG ACGATCCTTTTTAACTGGTGCCACGCCCACATTGGACGAGCGCTGTTTTT TTATGAATGTCCAAAACCATGCCAAAACCTCTTACCCGGCTGCCCAGCCG CTCTCTTCGGTTAATTTAGATAGGTTACTCAAGAGGTCAAAGGTTAAAGA TCAAGACGCTGCTGTACACAGGAGATCGCCGGCGCTAAGTTGTGTCTGCC GCCAGGTAACTTTGCAGTGTTCACGTGTGACNAATATAAGGCAATTTGTT GGCAATGTATTTGCTTCAATTATGCCCTTATTTTCATAGTCGACAGTTTT TATCAAACCTATATACCTTCCAACAGGGAGAGCGTTAGATCGTAAGGCTG CTGTGTTTAAATGCCCGTGTGACCTCCCTGACCCCAAAACAGAGCCCTGC ACCAGGCAAGTAAAGTATCACATGTGTCCTCCAGGGACGTCTCACAGGGA GCCTGCTCCGGTAAACTAGGTCACCTGTCAGTGCAATTTAACCTGAATAT ATAGACTTAAAAATAGCAAATTGAAAGGGAATTGTAGACATTTCCTTATA AATTATGTTAATGAGGCCTTGTCATGCATGATTTTTGTCTGATATTGTTC ACCTTTACTTAGCTTCCTATTGATACAGGAATGAAATTCCAATCATTTAC TATTGTAGTATTTTCAATTAGTATTTTCTCATCAATTATGCAAAATAGGT AGCTATTAGCATTATTGGTATCTATCGATACCTCTCTCTTTTTCAGCTAT ATATGTCACATGTTTGAGAGTCCTATTTTGAAAGGCAGCAGATTTATAAA CTTTCCTTGCTAATTATGCAAATTAGCTCCTGATTTGCATAATGAATATT CAATTTTGTAAATCATTAATCGAGCTATCTACATACCATAAATCAAGACG ATCCGTTGACCAAAAGTCTAGTTATTCATGTCCAAAGGTCAAAACAAATA AATTAAAAACACCCGCTGCAGCTCCAAACAAGCCGCTAGAGGGCCCAAAC GTGCACAACTTACTTCATGTGGCATGGACTATCTACCACACAAAAATCAT GACCGTAGCACTTGCAGAAAATTCGACCTCAAACTTTGAAGCTACACTGC AGTACCCAAAGTACCCGCTAGGAGGCCCATCATCGAACTTGACCTTCCCC TTTAATAAATCTACCTATTCACTAAATATCATGCACAACCATCAACAGCT TCTCGAGTTATCCTGTCAACAAACAAATAAGCATACATAAACAGCCCACT GCAGTACCGCAGGAAAATGCCAGGTGACCCATTTTTGAACTTGATCTTCG TTTTCACAATCTCTACGTACCCACCAAAAATCATGCAGATCCATCATCAA TACGTCGAGTTATGTTGTCTACATACAAACACACTAACAAAAAAAGTCCA CTGGAGCACTTTAGGAAAACGCCAGGTTAACCATTTTCGAACTTGACCTT CGTTCCCACAACCGCCACTTACCTACCAAAAATCAGCAAGATCCGTCAAA GTTCTCTCGACTTATGATCTCGACATACATACGGACCCACTTTACAGCTG GCGTAACCGATAACATAACCTTACCGCGAATGCATACATTCCCGGCGAAG GTAATTATGCAAATAAGGCTGTAACTAGCTATTTTATCTTAATTGACAGT CTTCTCCACCAAGATAATATATACTGCATGCATAGAAGTTCTTTCCGTTG GCAGGATTCCAATAACTTTATATTTCATAAAAAATTATGCAAATGAATTC AACATTTAACATGATCAACATGTTACATAACTTATGAATGGTGATATCTC ACATGAATTATGCAAATTAGGGCTTCATTTTCATATCTGATATCTCTAAA TGTTCGACCTACCAAAATTTACATATCTTTAACACATGCAGATACTAAAT TGTTGCCTTCATTTTATAGGAACAACAGCTATGGACGAATTTAGCAGTGA AAAACCGGGGGTGGTGAAGCTGCATCAATGGGAGAAGGGCTGGCAAAAAT CAAAGGATGCTGGGAAGAATCCACCGTTCCATGTAAATGATGTCCACCCG TGAGTCAAACATGCATTTGTGTTATTCATTTAATCATTTACAAATGACAC AATACATAATACACTGACTCTCAAGGCATCATAGCTGATATTGGAGAGTC AATAGGCAGGGACAGACAAGTACGGTAGGTAATGTGTTAGAACTGAAGTA GAAATCTTGAGGGATTTTGACTGGTACTCAGCGTGAAAGCTTTTATGTGG CAAACGGTACCAAACTAAATTCATGTAAGAGGATATCAATCTAAAGTAGA ACAGCAATATTTGCAAGCAGATACGGCATATTTCACTCCATATCACATTT TTATGCAAAAATGGACAGCTTCAACATAACATCTCTGCAAAAATGGAACA TTCCTAAATAACTTCTCCCTTAAAGGGTTCGGATATTGCAAAGTGATTCC AGTCTGAAATGAAGCTTTCCCAATTTGACTCCCATGCAAGAATGAGCTCT TCCAGAGGCACCCCAATTCATGATGGACCATTCCAAATACACTCCCACTC TAAAAATTTACGTTTTTCAGAATCACCCCAGTCCAAAATTGAATTTTCAA CATTTTCTTTCCACCATGTGCTGGGGTGATTATGCAAAAGTCCATTTTTG AATGGAAGTGTTTTTGGACTAGTCCACTTTACATGAGAGTGCTGCAGCAG TGCTGGAAGAGTCCATTATAGCAGTCCCTTTTCACGTGAAAAGGCATATG AAGTGAAATAAGCCATATTTGCTTGCAAATATCGCCTTTAGAGGTTTTCT GGATGGTGAATTACCAAGAAGAAGCCATGTAACGTTACATACAACATTAC ATTGTATATTTGATTTTCATCAACTTTTGTCTGATGTTCTGACAGGATGT TGTCAAAGCACCTGGAACAGCTGACAGGTGGAAGGTCTGGACTGAAGTTC CTTTTTCCGCTGTGTGGAAAAGCTGTGGACATGAAGTGGTAGGTAACCAG ACTATTAGAGATTAGACGCCCTCCTTTTGCGGGAGACACCAAGAGAACAC CTGGTTTCCCTGGAAATGACATACACATGTACTAAATACACACCTGTACA TGCACCAAGCAGGTAGTATAGCCGACGTTTCAGTGTACCATCTGCCACCT TCCCCAGGGTGAGAATGACTGGTTCTGACTTTACACTGCAGCTTAGTGCT GCTGCAGTGTGTTAAGAATGCAGTCCCAAACAACTTATTGAAATGTCACT GGGTATTAAATTTTGGTTGCGTTGAAGCCATGTAGCCAGTACTCTAGTAA CAGCATTCAATGTTGTGAGAAAAGCGTCAGTTTTCAATACTGGGCAACTC AAGCAACACTGTAAAGTGAAATACAAAACAACTTGAAAGGTAAATAACAT TGCACAACCAGTACAGTGCAGTACAGCACAATTGTACCACTGATACACGT GTATTGCCATGGGTCTATTTCCCCCATGGCCTCATGGCACAAGCTGTCAC ATAATCACACTGTTTTACAATATGGATCATATTCTGTGGATCAACAGGCT TGGGTTTGATCCCAGGATTGACACCAGCTCGGACGTGTTATCGACATTTC GGATGGTGACGTAAATCCGGCAGCCCCGTGTATGAGAAGACTTCAGATGA AATCCTCAAGCAGCAAACCTCTTCAGCTAAAAGAACCCAACACACTTATC ATGCTTATTGAGAAGAGTAGGGGTGTCCCCGTGTAATTGGTTAAAAAAAA AGGCGAGCCATAGCAAAGCCAACTTGCAATACAACTAGCTACACATACTG TATACTTGAACACATCATGCTTCACCTCAGTTGAGGATGACTGCTTTCAT ATATTTACAATTGAATGATGTACCTTCCTGCAGGCTTGCTGACCAGGGAC ATACCATTGTAGGTGTGGAGGGGGTGGAGGATGGTGTACGACAGTTTTTC CAGGAGGCTGCCATCCAGCCAACAGTAACAGATGAGCCTTCAGTGAACGG GAAACTCTACCAGGTGAGGTGTGAATACGTAACAATGACATGTGTGTGTT TTCCCTACATAAATGACATTGTACCTTTTGATTAGTTGCTACTCTTATTT TGATTATTCTTAGTCTAACTTTTTGACCGTTGGGGCCACACAGAAAATCT GTTACCTGTTTTCTACTCCTTCTCAGTTTTCTGTTTTTCCTAATGACTAA GTGTCATGCCTGTCCATTCCCTGATCTTATCCTCCCATCGTTTCCATTGC CTACCCCTTCTTCCTTTCCTTCCTAGACAGTTCCTTGCATATAGTTTTGG CTAGTCCCGATGACCATGACACGTGTCATTACCACATTTTATTTTTTAAA TGGACGAAGATTGATGCACACACAGATGTCACCCATATAATCATCTAAGT CAGCATGGCCTTATCAGTGCATTGAAGACCAAATAAAATCTAAGATGTAG TTATTGATGTACTTATACTTTAGAAAATGGTTTGGAAGGTAATACTGGTA AAAAGAGCTTTCAAATCTGTATAAAAGAATAATACTAAAGCCCAAACCAG ATAAAAATTTGGTTTGCAGTTGAAGATCCTGTTGTTGCTATTTTCTAACA AAATCCTTGTTGATCTAAAATCCACAGGGAATGGAGGGGAGGATCTCCAT CTATATTTGTGACTACTTCAACTTCACCAGGTTTGTATCGCTACATGCTA GTGATGCTACTCTTCACTTGAATATTACACTTTTTCACCGGGTCTTTCAG AAACTGGTGTCAGAAGGATAGTAGCCTGAGCGATCAGAGGCACTCTTAGG GTCTTCAATTTGAACTTGCATGCAAAAGAAATGTTATTTCTATGTCATTG TTAAGATCATTTATATATAGGGGCTTGGAGCTTCAAGTTATATACAATGT TATTTGTATATCAAAGAAAATAATTTTGCCCATCACTGGGAGTTATAGTT CACAGATGTTCCTCTTTGATTATGAATGAAATCTTCCCTGACCCCAGGTA GTGGTCACATATGTCAGAGCTAACACTGGCAATTGAAAGACTTAATTATA GACTAGACAACAGACACTGACATCTTTGATTCACTTCTGTTCTATAGTTC GGTCAAGGGTCAGTTTGATGCCATATGGGACAGGGGAGCATTCGTGGCCA TCAACGAAGTTGATCGAGAAAAGTGAGTGTTTTAAAGGAGATTAAGAAAC TTGATTTCTATTGTCACAAAATGTAACGTCTATATACCATGATGATGACA CTGCCACATTTGCTGCAAATTCTCAAGAACTGAATCCGTCATTTTTCCCC TGGTTACATTGCTATACAGCTATTAGATTACTTTTGCCACTTGTGCTATA CATTACTATATATTTTGTTTGTCTCTCTGGTCCTGCTAGAAATGAAATAT CACAATTGTAAAACACTGCAGAAATGTACCCAAAACAGGCTTGTGGTTAT GGTCAGGCTTATGGTCAGGGTATTGTGCCGAGTTGACCAGGGCATTGGAC TGAGTTGGTCTGATTAGCTATGGACCGAGTTGGTAAAGGGCCAAGGGTCC GACATCCGCCGGTGTGGACAGATATAAACCATGCAGCTTGTCAATAATAA CTGTTATCACCTCACTCCCAGGTACATCCAGCTGATGAAGACTCTACTGA AGCCTGATGGGAGGTGTCTGATGGAAGTTATGAACTATGACCCCAGCTTG TTCCCAGGTATATTAGCCCAGCTTGTTCCCAAGTAGGAACAAGCTTGTTC CCAGGTTGATATTCATGAAATCAAGGAGGTTATCCTTGCCTTGATAAAAT GAAATGTTTAAGTAGCTACTTTTCTCACTATAGGATCTGGAAAGATGCCA TGTCAACATAAAGTTTATAATGGGTAAATATTTGTCAAAATGTCTATTTC AGGTCCGCCCCACAATGTACCGGAGGATGAGCTAAAACAGCTTGTTGGTG AGTAAGAGAATAAGTCACTTAGAAGCTTAGTACCCTTTGTATGGGTTTGA AACTACTCACAATTACAAGAGGACTAGTAAATTAAAAGGGACATTATGGG AATGTGTGTGTGCATGTGGGTGTGTGTGTATGTGTGTGTGTGTGTACATG TGTGTGGTGTGTGTGTGTGTGTGTGTGTGCATTCGTGTGTGTGTATGTTT GTTTTTGTGTATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGT GTGTATGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATACAAACAATACT GCATTGGTCTATATACATTTGACAGTACAAGGGTCGAACAAGTAGCCTGG GTACCATCCTCCGTAGTAACCCCTGGCTCAATATTTTTGCTTGCGCTGGC TCAATCTTTTAGCAATCTAACAATCTTTTATTTGCAAATTCATGCCCGTA GGCTAATTGCAAGGGTACAAACAGTAGTAAGGTAACAATGGTAATGAGTG TCTATTCTATGCATCTAGCTAATGTTTCTACATACAACATTACTGGAGGG TTTGACTTCTTTTTTGGAGGCAGTGGCTGATGAAAAGTCCCACGTTTTTA ATGATTAGTTGGTTTTGGGATTGTAGTGGGAATGTAGTTTTTTGGTTAGT TGGTGAAAGCTCTGGAATATTGTTTTGGTTGTTTCGAAAAGCTTGTTTCT TTCATCCTCATAATGAGGGCAGCTACAAATGAAATGTATCTTCCACTGTA TCCGTTGTACAATATTTACACAGTCTCTCCTGAACTGACAGCTTTTTAGA ACAGCCTCTTTCTATCTCTAGTGGGTGANTAGTAAATTAAAAGGGACATT ATGGGAATGTGTGTGTGCATGTGGGTGTGTGTGTATGTGTGTGTGTGTGT ACATGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGCATTCGTGTGTGTGTA TGTTTGTTTTTGTGTATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TAAATACAAACAATACTGCATTGGTCTATATACATTTGACAGTACAAGGG TCGAACAAGTAGCCTGGGTACCATCCTCCGTAGTAACCCCTGGCTCAATA TTTTTGCTTGCGCTGGCTCAATCTTTTAGCAATCTAACAATCTTTTATTT GCAAATTCATGCCCGTAGGCTAATTGCAAGGGTACAAACAGTAGTAAGGT AACAATGGTAATGAGTGTCTATTCTATGCATCTAGCTAATGTTTCTACAT ACAACATTACTGGAGGGTTTGACTTCTTTTTTGGAGGCAGTGGCTGATGA AAAGTCCCACGTTTTTAATGATTAGTTGGTTTTGGGATTGTAGTGGGAAT GTAGTTTTTTGGTTAGTTGGTGAAAGCTCTGGAATATTGTTTTGGTTGTT TCGAAAAGCTTGTTTCTTTCATCCTCATAATGAGGGCAGCTACAAATGAA ATGTATCTTCCACTGTATCCGTTGTACAATATTTACACAGTCTCTCCTGA ACTGACAGCTTTTTAGAACAGCCTCTTTCTATCTCTAGTGGGTGAGCACT GATTCTTATCTTACAGATATTGGAAGAAGCAAAAAGGTTGAGCCAGCAGT AACGGAGGATGGTACCCAGGCTATCAAACAAGTGCGCACATCTACTGTCC AAAAACAGCATCACTTATTATACTAAACAATGTGTAATCTGTCTTCCCCA GGAGGTGATTATGAAATGACCCTCGTGGAAACTCTGGATCACTCAGAAGA AAAATGGTTTAGCCTTCCGTGGATCAAGACAGCCTACTATCTCATCAAGG CAACGAACTGATGAACATGTAGACGTTGTGAAAACTTCTCCATTCCACTG TATTTTAACACATAACACTTATAGAAACATAACATGACTTAACATTGTAT ATTTTAACAAAACGTTAACGCTACTTCGCCTATATCCAGGATTTCACATA CTAGATGCAACATCAGTAATACCACCAGAAATGCAAACTTGATCAAGGAG ATTGACTTGACAGACTAGGTTACGTATTCAGAACACTGTCGGAAAAGCTG TCAATTGATACCCCTGCAATGGATAACGACAATGTAAAAAAATTTCCACC CCAGAATGAAACAGACTGACCACATCATCGGAGGATTTGAACTGTGGTTT TCACTCGCTGGAACAAATGTTGCTTGCGACTTGGCCGTGTGGAACTTAAC GGATGTTTTGTTGTAATTTTTCGGTCTCAACACCACGGGCGGTCCTTTAA AATTGCTCTATTTTTGTATCAACAGGACCAGAGAAGAAAGGTAACTTGTA TAGCATCAGCTACAAAGGTAATCTATGATATTGACATATACATGTAACAG GAAAAAAGGGTTTAATGTCTTGCCAGATTGGTTTCAGTTAACTGTTGTTG GAAAACTCCCGAGTTTAATTGAAGTAATGTTACATATAGAAAATGTACAT CAAAGAGTGATGACAATCAAATTATTGTACGTGGTGCGAGTCCTATTATA TACACTTGTAGCATAGATTGAAGTAAACATATCAAGAGGTAAAGGTGTTT CTTAATTAAAAGGTAAAGGTAGTCTCATGGCTTTTTTGAGTCCGTAGGGG CGGTGGGCTGTCAATCCACTGTGTTATTGGAAGGCAGAGCTCATTCCTCT CCTTTCAGTGCTTTTTACCTCCCCAACCGAAGTCAGGTACCCA

Coding sequence (CDS) from alignment at Sc0000130:528068..537810+

>Blg03407.1 ID=Blg03407.1|Name=Blg03407.1|organism=Branchiostoma lanceolatum|type=CDS|length=585bp|location=Sequence derived from alignment at Sc0000130:528068..537810+ (Branchiostoma lanceolatum)
ATGGACGAATTTAGCAGTGAAAAACCGGGGGTGGTGAAGCTGCATCAATG
GGAGAAGGGCTGGCAAAAATCAAAGGATGCTGGGAAGAATCCACCGTTCC
ATGTAAATGATGTCCACCCGATGTTGTCAAAGCACCTGGAACAGCTGACA
GGTGGAAGGTCTGGACTGAAGTTCCTTTTTCCGCTGTGTGGAAAAGCTGT
GGACATGAAGTGGCTTGCTGACCAGGGACATACCATTGTAGGTGTGGAGG
GGGTGGAGGATGGTGTACGACAGTTTTTCCAGGAGGCTGCCATCCAGCCA
ACAGTAACAGATGAGCCTTCAGTGAACGGGAAACTCTACCAGGGAATGGA
GGGGAGGATCTCCATCTATATTTGTGACTACTTCAACTTCACCAGTTCGG
TCAAGGGTCAGTTTGATGCCATATGGGACAGGGGAGCATTCGTGGCCATC
AACGAAGTTGATCGAGAAAAGTACATCCAGCTGATGAAGACTCTACTGAA
GCCTGATGGGAGGTGTCTGATGGAAGTTATGAACTATGACCCCAGCTTGT
TCCCAGGTATATTAGCCCAGCTTGTTCCCAAGTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg03407.1-exon-Sc0000130-1570713199:528068..528095Blg03407.1-exon-Sc0000130-1570713199:528068..528095Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:530987..531116Blg03407.1-exon-Sc0000130-1570713199:530987..531116Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:531963..532055Blg03407.1-exon-Sc0000130-1570713199:531963..532055Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:532951..533080Blg03407.1-exon-Sc0000130-1570713199:532951..533080Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:533695..533747Blg03407.1-exon-Sc0000130-1570713199:533695..533747Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:534165..534239Blg03407.1-exon-Sc0000130-1570713199:534165..534239Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:534689..535014Blg03407.1-exon-Sc0000130-1570713199:534689..535014Branchiostoma lanceolatumexon
Blg03407.1-exon-Sc0000130-1570713199:536819..537810Blg03407.1-exon-Sc0000130-1570713199:536819..537810Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg03407.1Blg03407.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000130genomeSc0000130:528068..537810 +
Properties
Property NameValue
GeneIDBlg03407