Blg03396.3 (mRNA) - B. lanceolatum

Overview
NameBlg03396.3
Unique NameBlg03396.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000130:647661..650040-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg03396.3 ID=Blg03396.3|Name=Blg03396.3|organism=Branchiostoma lanceolatum|type=mRNA|length=2380bp|location=Sequence derived from alignment at Sc0000130:647661..650040- (Branchiostoma lanceolatum)
CTGTGATATGAAAGCTTTTTTTTTATACAGATTGAGCTGTTTTTACTAAG
AATGACACCTATATCACTATTATTAAACAGTAGTGGTAGGTCCCTAATTA
CCCATGATGCTTTGGCGCAGTGACGTCACCACAGCCATCTTGGAGGTCAG
ATCGGGAGGACAAACCGTAGAACCCCCAAAAATTCAAATTCAACCTCAAA
TTGTCAATTTCGGGGGAAAATAACAGGTTTGTGGCGTACATTGTAAGGCT
ACAACATTTGCTTGTAGTTACAGAGTGTGTAGAAGTTGATATTTGATGCA
TATTTGGTTGAATTTATGCTAGAGGATGCGTTATGTAACTTTGGCGCACT
GCGACCTTTTTGATGGGGAGGCCTAGGGGGCAGGCGAGGAAAAACTATGA
AAGTGACGCTGTATTTGAACTAAATATTTTATACGACTGATGAATTGTGT
GATGATGTGTAAAAGAAGACGCCAACACATTTACGTACTGAGAAGAAATC
ACTCAAAATTCTACATTTTTAGAGGAATGCAAGACCATTTATTAACACAT
CAATTTCACCACACACACACACACACTGTATACAACTTACAAGATATATA
CCTTGATATATTTCAGAACTTGAGCTACTGTAAATGTTGAAGTTTTGGTG
GTGGTTTGATGTTCATGGTTTTAGCTGTGACCTCTTCACTGCGAACAAGT
TGATGCTGGCTGCCTAACCCCAAAAAAGAACATAAAACCACCGCAAACTC
TCCAAATCCAATTTCTTCTAAGCGCGAAATTTAATCCCTGCAAACTTAAA
TGCATTTACAGTATTTTCTTTATCATCTAGGCTTCATCATGGGGAAGAAC
TTTGGCGAGCTGTACAAGATGCGTCACATCATCACGTACAGCATCTCACC
TCTGGAACAGCGAGCCTTTGCTGGCTACTTCAGTAAGGGTTTCCCCAACC
TGCTGAGGAGAATGAAGAACAGAGTATTCAGAATTGTACCTCGTAAGTAT
CCAGGTGTGAGAAGTAGGAGACACAACAGACACGACCACTCCGTCTGCTC
ATGATGAAGTCTATCAAACAACTCGCTTTATTCAAAGGAGAGAAAGGGAT
CGGCCATTCTACTTGATTATATGGATGACATCCACTTTTGTATCAATTTT
CGTTTCCAAAAAAAAAAGAGTGTTCATACTGTAAATCGTAAGAAGCAGCT
GCAAAATGAGAATATACATGCTGTAAATTGGAAAAAAAATATTTCAGAAA
ATGGATACTAATGTTGCAGAATGCCAAAGTCAAAGAAGAAATTTTGAAAG
ACCAAAAATGAAGAATCTTTATTTCTGTGTACCATACTCGTTTAGTTTTG
CTCTGACCTGACCACATTCTTCCTGACCACATAAATTTCACAATGAAGGT
AACTTTTTGTATTCGCACGCTCGCATTAGTTTTGGGGTCTCCAGAGGATG
TCATATAATCAAATCAACACGTCCTTACTATGAAATTAATGACATTTTTA
TTAATCTGATCAGTAACATTTTAAGAAACATTTTTCTTTCTCTCCTGTCT
TGCAGAGGTTGTGATTGGGTACGTCATCTACAGCTGGGCGACGAATGAGA
ATCATCGGTCCATCAGAAAGGGTTTCGAAGGAGAAGTTGAATAGATCATC
CCGGTGGCAACGTGCATACCTGAGACAACTTGATGTGTGGAGTGATCATC
TTTGCTTTGTGAACAGTAGACTTCTACCATGGTGTTGTCAACACTCCTAG
ATGTTTGCATACTGCATTGACTTTCATCAACCCATTCTATATCCCCTCTC
AACAACAATATAACTGTATGCCTTTGGAAGTACAAATTCAACAACAGTGT
AACAGTATACCTTTGGAAGTACAAATGTCAACAACAGAATCCCACATCGG
AATGGTATTGAGATTGTAAATGGTTTTAGAAGAAGGCTGCATTAAAGTTA
CATCAAATGTTACAAACCACCTTTGCTTGTGATGTGTCATCTTGAGTCAT
GTGAAAAAGTGCATCTAGTTGGTAGGCCATAGGAAAATTAAGGTTCATGA
ATCACAACCAAGATGTCATTTACCTGGTCGANCTAGTTGGTAGGCGGTAG
GAAAGTTAAGGTTCATGAATCACAACCAAGATGTCATTCACCTGGTCGAT
GTGTAGTAACTCCTTGCCTGCATGTACCTTCCTCAGTGCATGAATGGTCT
CTACTAAGTTCTTGAAAGGTATATGTAGCTGAGGAGTTACCAGATGTCAG
CTAGGACAATGCCATTCAAGTTCGGCCATAATTTTTTTCCCCTGAATGCC
AGTAGCATTAGGGATTGGTACTGAAGTTTAGGTACATTTACCTGAGCAAT
TTGACCAAGTATCCTGTGGTCTTCTATAAG

Coding sequence (CDS) from alignment at Sc0000130:647661..650040-

>Blg03396.3 ID=Blg03396.3|Name=Blg03396.3|organism=Branchiostoma lanceolatum|type=CDS|length=243bp|location=Sequence derived from alignment at Sc0000130:647661..650040- (Branchiostoma lanceolatum)
ATGGGGAAGAACTTTGGCGAGCTGTACAAGATGCGTCACATCATCACGTA
CAGCATCTCACCTCTGGAACAGCGAGCCTTTGCTGGCTACTTCAGTAAGG
GTTTCCCCAACCTGCTGAGGAGAATGAAGAACAGAGTATTCAGAATTGTA
CCTCAGGTTGTGATTGGGTACGTCATCTACAGCTGGGCGACGAATGAGAA
TCATCGGTCCATCAGAAAGGGTTTCGAAGGAGAAGTTGAATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg03396.3Blg03396.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg03396.3-exon-Sc0000130-1570713199:649815..650040Blg03396.3-exon-Sc0000130-1570713199:649815..650040Branchiostoma lanceolatumexon
Blg03396.3-exon-Sc0000130-1570713199:649049..649210Blg03396.3-exon-Sc0000130-1570713199:649049..649210Branchiostoma lanceolatumexon
Blg03396.3-exon-Sc0000130-1570713199:647999..648485Blg03396.3-exon-Sc0000130-1570713199:647999..648485Branchiostoma lanceolatumexon
Blg03396.3-exon-Sc0000130-1570713199:647661..647930Blg03396.3-exon-Sc0000130-1570713199:647661..647930Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000130genomeSc0000130:647661..650040 -
Properties
Property NameValue
GeneIDBlg03396