Blg01800.0 (mRNA) - B. lanceolatum

Overview
NameBlg01800.0
Unique NameBlg01800.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000098:872524..880345+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01800.0 ID=Blg01800.0|Name=Blg01800.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7822bp|location=Sequence derived from alignment at Sc0000098:872524..880345+ (Branchiostoma lanceolatum)
ATGTCAATTTCAATTCGTGAGAGGGTTAGTAAGCGGTCGGGGATTAGTCA GGAGAGATTCGTCAGTCTGCCGTTAGACGTCGGGATAGTTGGGAGTAAGT TAGAAAGCATTCGGGGCTCCGACTGATCCCGAACTACCGGGGACCTTAGT CTGCTAGTAGTCGGGAGACATGTTCGGCTATGTGTAATCTGGGCTTAGGG TAGACATCTTGGAAAAAATGCACCTTTTTAGTTTGTTTCAGTGTACCTTC ACTTTTTTTCTATAAAGTTAATGGCGGTTGGTCCAACTGGGGTCCATGGT CCGGCTGCAGCGTGACGTGTGGAGTTGGTACGAGGACTCGGAACCGAGCC TGCACAAGCCCCGCACCAGCTAACGGTGGAGCGGACTGTGCTGGACAAGG TCAGGAGGCACAACAGTGCAACACGGGGGTGTGTCCAGGTAAAACTTAGT TATATATATACCTGCAACCCGAAAATCCACAATAATGCACGGTTTGATCT TTATAAGTGCTCAATCGACCAGTGAAATGATACTTTGTACAGCCTGTTCA ACCGAACGCTCTACAGCCGCACACCCAACAAAACGGTTAATATTATATGC AAACCACATCGAACGTTTTCTTACGTCATCTCAATGCAGTAAAACTTTTC ATACGCCCTTTGGTACGCCGTAACTTTATCATCTATGTTTCATACTGGTT CTAGTTCATGGCGGCTGGTCAAACTGGGGTCCATGGTCCGGCTGCAGCGT GACGTGTGGAGTTGGTACGAGGACTCGGAACCGAGCCTGCACAAGCCCCG CACCAGCTAACGGTGGGGCGGACTGTGCTGGACAAGCTCAGGTGACACAA CAGTGCAACACTGGGAGGTTTTGTCCAGGTAAAAGTTATTTATATATATA TACATATGTACCTGCAACCCTAATTTTCTTTTCTTGTAAAATCTGGTAAC TAACATTCCACAGTATTATGTGCGCATGTGCAATCGAACACTTATCATGA TGTTTGGTTAAGGGCCCATTTTACCTGAAAATCATTGCCACATTGTTCAT GCAATTCATATCATTCGCCATGACATCAGACCCTTCCTTTTGCCCCTTGT TATGCAGTACTCAGGTATTAATCAGAGGTGCATTTCGTAGATCTATGAAA AAGCACCATCTTCAGTTTAATTCAGTGTATATTGCTTTTTCCTTGCAGTT CATGGCGGCTGGTCAAACTGGAGCCCATGGTCCGGCTGCAGCGTGACGTG TGGAGTTGGTACGAGGACTCGGAACCGAGCCTGCAACAGCCCTGAACCAG CTAACGGTGGAGCGGACTGTGCTGGACAAGGTCAGGTGACACAACAGTGC AACACTGGGAGGTTTTGTCCAGGTAAAAGTTATTTATATATATATAAACA TATGTACCTGCAACCCTTATTTCCTTTTCTTGTAAAATCTGGTAACTAAC ATTCCACAGTATTATGTGCGCATGTGCAATCGAACATTTATCATGATGTT TGGTTAAGGGCCCATTTTACCTGAAAATCATTGCCACATTGTTCATGTAA TTCATATCATTCGCCATGACATCAGACCCTTCCTTTTTCCCCTGGTTATG CAGTACTCAGGTATTAATCAGAGGTGCCTTTCGTAGATCTATGAAAAAGT ACCATCTTCAGTTTAATTCAGTGTATATTGCTTTTTCCTTGCAGTTCATG GCGGCTGGTCCAACTGGGGCCCATGGTCCGGCTGCAGCGTGACGTGTGGA GTTGGTACGTGGAGTCGGAACCGAGCCTGCACAAGCCCTGCACCAGCTAA CGGTGGAGCGGACTGTGCTGGACAAGCTCAGGAGGCACAACAGTGCAACA CGGGGGTGTGTCCAGGTAAAACTTAGTTATATGTATACCTGCAACCCGAA TATCCACAATAATGCACGGTTTAATATCTTTATAAGTGCTCAATCGACCA GTGAAATGATACTTTGTACAGCCTGTTCAACCGAACGCTCTACAGCTGCA CACCCATCAAAACGGTTAATATTATATGCAAACGCCATGGAACGTTTTCT TACGTCAACTTGATTTGATTTGATTTATTGGAATTGCAACAGTGCAATAC ACGTGGGACACAGGCAGCTATTGCTGATGTCGTGACCCACACACATAATG TACCCGATTTTTACTTAATGCCCTAGAGCTTTACATACGCCCTTTGGTAC GCCATAACTTTACTATCTATGTTTCGTACTGGTTCTAGTTCATGGCGGCT GGTCAAACTGGGGCCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTTGGT ACGAGGACTCGGAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGG GGCGGACTGTGCTGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAG TGTCATGTGAAGGTAAGTTTATCATGTAAAAGCAATTAGGAACGTTTCCG AACGTTTCGAATATACAAAATAATGCAGTCTATCATATTCTTGATGAGCG CTTAATCGACCAGTGAAACGATGCTTCTTACAGCCTGTTCAACCAAACGA TGTACAGCCGCACACCCAACAAAACGGTTATGCAAACGACATGGAACGTT TTCGTACGTCATCTCAATGCCGTAGAACGTTCCATATTATATAACGTATC AATTTACCATCTATGTTTCGTACTGGTTCTAGTTGATGGCGGTTGGTCCA ATTGGAGCCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTTGGTACGAGG ACTCGGAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGAGCGGA CTGTGCTGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAGTGTCAT GTGAAGGTAAGTTTATCATGTAAAAGCAGGCCGTTCGGAACGTTGCCGAA CGTTTCTAATATCCACAGTCTACATGTGTATGTTTGCTAGGCGCTCAATT GACAAGTAAAACGATACTTTGTACAGCCTGTTCAACTGAACGCTCTACAG CCGCACATCCTACAAAACGGTTGTGCAAACGACATGGAACGTTTTCGTAC GTCAACTTAACGCCGTTGAACTTTCCATAGGCCCTTTGGTACGCCATTAA GTTACCATCTATGTTTCGTACTGGTTCTAGTTGATGGCGGCTGGTCCAAC TGGGGCCCATGGTCCGACTGCAGCGTGACGTGTGGAGTTGGTACGAGGAC TCGGAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGAGCGGACT GTGCTGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAGTGTCATGT GAAGGTAAGTTTATCATGTAAAAGCAGGCCGTTCGGAACGTTGCCGAACG TTTCTAATATCCACAGTCTACATGTGTATGTTTGCTAGGCGCTCAATTGA CAAGTAAAACGATACTTTGTACAGCCTGTTCAACTGAACGCTCTACAGCC GCACATCCTACAAAACGGTTGTGCAAACGACATGGAACGTTTTCGTACGT CAACTTAACGCCGTTGAACTTTCCATAGGCCCTTTGGTACGCCATTAAGT TACCATCTATGTTTCGTACTGGTTCTAGTTGATGGCGGCTGGTCCAACTG GGGCCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTTGGTACGAGGACTC GGAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGAGCGGACTGT GCTGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAGTGCCATGTGA AGGTACGTTTATCATGTAAAAGGAATTCGGAACGTCGCCGAATTTTTCGA ATACCCACACTCTACATGTGTATGCTTGTTAGGCGCTCAATTGACCAGTG AAACGATGCTTTGTACAGCCTGTTCAACCAAACGATCGATGTACAGCCGC ACACCCAACCAAACGGTTATGCAAACGACATGGAACGTTTTCTTAGGCCT ACTAAAAGGGTAGAAGACACCAATGACATCAACACTAAGAATTTCCTGAA ATTACATAGAACAAAATACTATTGTATAATAACATAGAAATTTTCACAAC ATATTCACACTTCGGGTGTAATTGAACATCGAACCATGAAAACATCATAC CTCCAGTTTTCTTATTCTTCCCACCAGGTAATTACATTTATCAGTGACTT AACTGCTCATGACGTCACGAGAACATGGCAGCCGATTTGGAACTTTGCAC AACGGCTCGGAAAGAACGTTATTTTTACAAGAAAACGAAATGGATATTGT TATGTCATTTCATTAAATGTTATCACGATAATTAAGCACTGTTTGCTCAT TAAATAATGTTTTTCGCAAGCCGTTGTGTAAGGTTCCGAACCGGCTGCCG TGTTCATTGTGACGTCACGGGCAGGTATAAGCCACTGCTTAATGTAATCA CCTGGTGAGGAGATCAGATAAGAATAACGAGCTGGATCCATGGAAGTATG GTTTCTGATGGTTCGATGTTAGATAACATCAGAAGGGTGTGTATTTGTTT TAAACGTTTATATTCCTTCAATGATGCTATTCCTATTTCAGATAATAAGA AAAAGTTGTATTTGGATGTCTTAAGCCCTATAACGCCGTAGAACTTTCCA TATGCCCTTTGGTACGCCATAAAGTTACCATCTATGTTTCGTGCTGCTTC TAGTTGATGGCGGTTGGTCCAACTGGGGCCCATGGTCCGGCTGCAGCGTG ACGTGTGGAGTTGGTACGTGGACTCGGAACCGAGCCTGCACCAGCCCCGC ACCAGCTAACGGTGGGGCGGACTGTGCTGGACAAGGTCAGGAGGCACAAC AGTGCAACACGGGGGTTTGTCCAGGTAAAACTTAGATATACCTGCAACCC TGAAATCCACAATAATGCACAGTTTAATATTCATAAGTGTTCAATCGACC ATTGAAATGATACTTTGCACAGCCTGTTCAACCGAACGCTCTACAGCCGC ACACCCAACCGAACGGTTATGCAAACGACATGGAACGTTTTCTTACGTCA ACTTAATGCCGTAGAGCTTTACATACGCCCTTTGGTACGCCATAACTTTA CTATCTATGTTTCGTACTGGTTCTAGTTCATGGCGGTTGGTCAAACTGGG GCCCATGGTTCGACTGCAGCGTGACGTGTGGAGTTGGTACGAGGACTCGG AACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGAGCGGACTGTGC TGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAGTATCATGTGAAG GTAAGTTTATCATGTAAAAGCAATTCGGAACGCTGCCGAACGCTTCGAAT ATACACAATAATGCTATCATATTCTTGATAAGCGCTTAATCGACCAGTGA AATGATGCTTTGTACAGCCTGTTCAACCAAACGCTGTACAGCCGCACACC CAACCAAACGGTTATGCAAACGACATGGAACGTTTTCTTAGGTTTACTTA ACGCCGTAGAACTTTCCATATTATATGCCGTAAATCTACCATCTATGTTT CGTACTGGTTCTAGTTGATGGTGGTTGGTCAAACTGGGGCCCATGGTCAG ACTGCAGTGTGAGGTGTGGAGTTGGTACGTGGAGTCGGAACCGAGCCTGC ACCAGCCCCGCACCAGCTAACGGTGGAGCGGACTGTGCTGGACAAGGTCA GGAGGCACAACAGTGCAACACTGGGGTGTGTCCAGGTAAAACTTAGTTAT ATAGCCTAAGGGTAGAATCACTTCAACTTCCACGATTCCTAGACAGTCTT TTCTGAAACTGAATCTCCGGAGCTCCACGGTCAGGAATATATCCGGTGTT CTTAGCCTGGTCAATTACGCTCCCTAGTGACCCTGTCACGACAAGGCAGC CCATAGTGAAGTGATTCGTTTTCGTCCACAACCAGACAATGACATAGACG TCAGCGAGTGTGTAAAACTTTAGGCATCGAAGCAGGAAGGCTAGTCCGGG CAGCGGAAAGAGGGGAGGGCTGAGGATGAGAAAATGAGAGAAAGAATGAT GAATAGACAAATACATCGACGTTCCGATGTCTATCGTAGGAAATATCTTA CATTAATGAATAATTAGCCGTTCTATGGCTTGAATCTCATTATCTCTCGT TCACTCACTATCATCATTCTTACCGACTGGAGGCGACAATTTTTGACGGC CATTATACAAAATGCTAGTTGTGCTGAAAGTATTTTTGTTGAACAAGGAC AGTGTTGGCTAAAGATTCTTGGGTAAGGCGAAGAAGGGATTTTACAATGA ATGTGAAACCGTGTGAAACTGAACTTCTCATTTCCCAACTAAATGGTATA CACCGGTACAAGAATAGCCCATGCCATGGTATGATGGCATGATTGATTAC ATGGTAAATTGACTATCAAATACCATTTTGGACATTATTTGGAAACATTT TGTTTTCTTTGAATTCAACTGCTTTAGTCCACACCCAGACTTTATAGATA ACAGTTGTGCTCCTAGACAGATGTTATACATTATTTGATAGGTATCTCTA CAAGTCCTCTTGAAAGCCCCAGTTACACATAGCCGAACATGGCCTCCTGA CTCTCCCCCGACCATGGTTAGGAGTGATTCGTTTTTTTTCTGTATTTGGA ACAGGCAAGATCCTTTTCTGGGCACAGGTGTGATTATAAATGGTAACTCG TGAATGTAAAAGTAATTAGAGAAACTCAAATGACATTTTATTGAATGAAG ACCTTTATTGCACATTTCTGCCACACTTGGCTAAGTACAGGTCACAACAA AACAACAAGTACAGTTAACGGATACAAAAAGAATATGACTATCATTAGAT AAATTCTACTTCTCCTCGCTTTTCGGTTATAGTAGATATAAAAGAACAGA CGTGTTTTTCAATGGGAGGTTTGTCTAGTCGCATTAGGAATATGAATCTT TGTACAGTGCTTAAATGTGTGAAGTAGGGAAATAAGTTTTCTACAAGCTT ATACAGTTCATTTCTTTCTTTGGTATATAATCCACATTCTACCACAAAAT GATATTTATTATTACTCACTGATGAATCTTATCATGTCTATCTCTAGAAT GCCCCTATGGATACATGGCGTACAGGGATGGCTGCTACCGGTTCTGGGGC GGGAAAAACGCTAAGGCCTACAGCGGTGCCAGACAGGTCTGTCAGGAAAA CGGAGGAGACATCTACATGTGGAAGAGTGCTGCTGAGGTAGCTAGGCTCA AGAGGAAACTGATCCGGTAAGAAACTGGTATTCTATGAGCTGACTGATTG GAAAAAGAAAAGTCCACGACTCAATGTTTGAAAGCAAATATGCCAATTTA AAAAGGTTTTTCATAGGAAATTGATAACAAACGAAATTTTCGGGAGGAAT TGATTGGACTTTAGAAGAACATACATCTTCATATCGATTAGCTTAGCGAC ACTTGCAATTCAAGAACTTTTAACTGATGAAACATCATCAATAGTATGTG AGTGAATCAGCACGATTCAGGTCTTGTGGTGGTATTTTGTCCCCTCCATG TGCTGTAGTGAAACGAGTAATCTTCAAATATATAACATGTGTAACACACT TTACAACTGCATAACATGGCCATGTACATTTCAGCAACGGCGCACCAAGT CTATGGATAGGCCTGAGTGATGAGAACCCCGAGGGAATCTGGCTGTGGGC TGACGGGATGGTTTTCGACGGAAGCGACTTCACCGACTGGTCTCCCGACC CGCCGCGCAACACGGATAAGAAGGACTGCGCCGTCGCACGGAGGGTCCAC CGGTACCGCTGGAGGCCCGTGCCCTGCAGCCTCAGGAGGGCCTTCATCTG TCACTCTCCACGGGCTCCGTAA

Coding sequence (CDS) from alignment at Sc0000098:872524..880345+

>Blg01800.0 ID=Blg01800.0|Name=Blg01800.0|organism=Branchiostoma lanceolatum|type=CDS|length=2028bp|location=Sequence derived from alignment at Sc0000098:872524..880345+ (Branchiostoma lanceolatum)
ATGTCAATTTCAATTCGTGAGAGGGTTAGTAAGCGGTCGGGGATTAGTCA
GGAGAGATTCGTCAGTCTGCCGTTAGACGTCGGGATAGTTGGGATTAATG
GCGGTTGGTCCAACTGGGGTCCATGGTCCGGCTGCAGCGTGACGTGTGGA
GTTGGTACGAGGACTCGGAACCGAGCCTGCACAAGCCCCGCACCAGCTAA
CGGTGGAGCGGACTGTGCTGGACAAGTTCATGGCGGCTGGTCAAACTGGA
GCCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTTGGTACGAGGACTCGG
AACCGAGCCTGCAACAGCCCTGAACCAGCTAACGGTGGAGCGGACTGTGC
TGGACAAGTTCATGGCGGCTGGTCCAACTGGGGCCCATGGTCCGGCTGCA
GCGTGACGTGTGGAGTTGGTACGTGGAGTCGGAACCGAGCCTGCACAAGC
CCTGCACCAGCTAACGGTGGAGCGGACTGTGCTGGACAAGCTCAGGAGGC
ACAACAGTGCAACACGGGGGTGTGTCCAGTTCATGGCGGCTGGTCAAACT
GGGGCCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTTGGTACGAGGACT
CGGAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGGGCGGACTG
TGCTGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAGTGTCATGTG
AAGTTGATGGCGGTTGGTCCAATTGGAGCCCATGGTCCGGCTGCAGCGTG
ACGTGTGGAGTTGGTACGAGGACTCGGAACCGAGCCTGCACCAGCCCCGC
ACCAGCTAACGGTGGAGCGGACTGTGCTGGACAAGGTCAGGAGGCACAAC
AGTGCAACACGGGAGTGTCATGTGAAGTTGATGGCGGCTGGTCCAACTGG
GGCCCATGGTCCGACTGCAGCGTGACGTGTGGAGTTGGTACGAGGACTCG
GAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGAGCGGACTGTG
CTGGACAAGGTCAGGAGGCACAACAGTGCAACACGGGAGTGTCATGTGAA
GTTGATGGCGGCTGGTCCAACTGGGGCCCATGGTCCGGCTGCAGCGTGAC
GTGTGGAGTTGGTACGAGGACTCGGAACCGAGCCTGCACCAGCCCCGCAC
CAGCTAACGGTGGAGCGGACTGTGCTGGACAAGGTCAGGAGGCACAACAG
TGCAACACGGGAGTGCCATGTGAAGTTGATGGCGGTTGGTCCAACTGGGG
CCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTTGGTACGTGGACTCGGA
ACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTGGGGCGGACTGTGCT
GGACAAGTTCATGGCGGTTGGTCAAACTGGGGCCCATGGTTCGACTGCAG
CGTGACGTGTGGAGTTGGTACGAGGACTCGGAACCGAGCCTGCACCAGCC
CCGCACCAGCTAACGGTGGAGCGGACTGTGCTGGACAAGTTGATGGTGGT
TGGTCAAACTGGGGCCCATGGTCAGACTGCAGTGTGAGGTGTGGAGTTGG
TACGTGGAGTCGGAACCGAGCCTGCACCAGCCCCGCACCAGCTAACGGTG
GAGCGGACTGTGCTGGACAAGAATGCCCCTATGGATACATGGCGTACAGG
GATGGCTGCTACCGGTTCTGGGGCGGGAAAAACGCTAAGGCCTACAGCGG
TGCCAGACAGGTCTGTCAGGAAAACGGAGGAGACATCTACATGTGGAAGA
GTGCTGCTGAGGTAGCTAGGCTCAAGAGGAAACTGATCCGCAACGGCGCA
CCAAGTCTATGGATAGGCCTGAGTGATGAGAACCCCGAGGGAATCTGGCT
GTGGGCTGACGGGATGGTTTTCGACGGAAGCGACTTCACCGACTGGTCTC
CCGACCCGCCGCGCAACACGGATAAGAAGGACTGCGCCGTCGCACGGAGG
GTCCACCGGTACCGCTGGAGGCCCGTGCCCTGCAGCCTCAGGAGGGCCTT
CATCTGTCACTCTCCACGGGCTCCGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01800.0-exon-Sc0000098-1570713199:872524..872617Blg01800.0-exon-Sc0000098-1570713199:872524..872617Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:872791..872922Blg01800.0-exon-Sc0000098-1570713199:872791..872922Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:873722..873853Blg01800.0-exon-Sc0000098-1570713199:873722..873853Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:874218..874388Blg01800.0-exon-Sc0000098-1570713199:874218..874388Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:874762..874935Blg01800.0-exon-Sc0000098-1570713199:874762..874935Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:875206..875379Blg01800.0-exon-Sc0000098-1570713199:875206..875379Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:875654..875827Blg01800.0-exon-Sc0000098-1570713199:875654..875827Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:876102..876275Blg01800.0-exon-Sc0000098-1570713199:876102..876275Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:877177..877308Blg01800.0-exon-Sc0000098-1570713199:877177..877308Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:877600..877731Blg01800.0-exon-Sc0000098-1570713199:877600..877731Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:878038..878169Blg01800.0-exon-Sc0000098-1570713199:878038..878169Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:879571..879739Blg01800.0-exon-Sc0000098-1570713199:879571..879739Branchiostoma lanceolatumexon
Blg01800.0-exon-Sc0000098-1570713199:880108..880345Blg01800.0-exon-Sc0000098-1570713199:880108..880345Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01800.0Blg01800.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000098genomeSc0000098:872524..880345 +
Properties
Property NameValue
GeneIDBlg01800