Blg01772.1 (mRNA) - B. lanceolatum

Overview
NameBlg01772.1
Unique NameBlg01772.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000098:509564..514234+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01772.1 ID=Blg01772.1|Name=Blg01772.1|organism=Branchiostoma lanceolatum|type=mRNA|length=4671bp|location=Sequence derived from alignment at Sc0000098:509564..514234+ (Branchiostoma lanceolatum)
TTTTTTTTCCATGATTGTATTTTTTAATGTTTGAGGCCAGGGTCATCTGA
AAAGCAGATCCGTGGATCTGAGATGGACCCTGGTAAAATAAAATAAATTG
AAATTGTTTCTTATCACAGTCTTTTAGACGGAAAGGCTATATGTAGACTA
TAGAATATTGTTAGTTATTACTGCGGTGATTCTCAAGGTTATTGCGTTCA
TGGGTATGATTTGATAATACTTGGACAGGCTTGATAAAGTAATTATGGAA
TCATTGATGTTTGTCAAGTTTTCAGGTTTCACAACACATTCATTTATTAC
GAATATTTCATTAGCTTTACACAGTTGGGTACTAACTCGATTGTACATCT
CGAAGTTAAATCTAGTTGCAGACTGCAGTTCACACATTTAGAGAACCGCT
ACTGATAAACAAAGTGACTGTATGGAGAGGTGGTAAAAAAAAACACAATT
TATAGCTAAGAAAATACACTTTCAATGTGTAATTCATGCGGTATATTTGC
ATCAGCTCACAAATAAACTAGAGCATTGGATGGAATTCACTTTTATACAG
AAGAGTTTAAGTTTGTAAAATGTAGACAATTGAATTGCATTGCATCTCTT
TGCTTATACAGCTTTCACAATCATTGTACAGCGCTAAAGCACGTATACCT
GCCACTGTTTCTCTACTTTGCGTTGTCGTGGTGTTTTGTTGCTTCGTCCT
ACTGTATATTGCCGATAAGAATAAACTAAGGACTTGCTTTCAATTGGATT
ACAAATAACAACGCCTACTTTGCCCTTTAAGTCTTAAAGCATGTCTGTCG
TGACATCTTTATTTGCATGACTAAGCAGATTGAAACACCAGATACTTCGC
CTTTTTGGTGAGAAAGGTGCAGCTGAGAAAGTTTGTATCAGTATCATTCC
TGGGCGTTATCGCTCCTTTGCTTTCAATTGGATTACAAATAACAACGCCT
ACTTTGCCCTTTAAGTCTTCAAGCATGTTTGTCGTGACATCTTTATTTGC
ATGACTAAGCAGATTGAAACACCAGATACTTCGCCTTTTTTGTGAGAAAG
GTGCAGCTGAGAAAGTTTGTATCAGTATCATCATAGTCCTGGTCGTTATC
GCTCCTTTGGAGGAACCCTCCCTTGTCAGACACCGATGGTGTGTCAGACT
CCGAAGCTTTAAAGTTTGTATATGATAACGTAATGTCAATATCAAACAAC
CGGCCCTAACCACTGTCCTTCCGGACCACCCCTGTGACGCTTGTGTGGCC
GTTATAAGTTGACGTCGCCGGCCGACCAGGACAGTTCACTCCAACTGCTG
ACGACAGAAGACCGACATCACCATGAAGACTTTTGTAGCATTGGCGCTTC
TCAGCCTTGTTTGTGTGGAGGGGTGGCTCTTCAATGACGGTACAATATTG
TCCTTTTTTCACTCTTTCTCTCGTTTTTGTAGTGTTCTTGAATGCGAGAG
AGATGGCAATAGATTACTTTCAATGTAGGTATGAAAAAGAGCTGTATTTC
TGTAGCTGTATTTCTACAATTTCCCCAACCCCTCTATATTCTTACGTACG
GAAGTTACTCAATGTGAATCTTTCTGGTCCAGTCGTTAAGCCGGAGATAC
ACTTCAGAACATTTTAAGATCAGGTGCTTAATTTTCATCCTTCATACATG
AATAATGTATTCACATATTCTATCTCCTGGCGTACCTAACGTTCTCCTGT
TTCCCATGCAGACGCTGAGTGGAACGACCTCAAAGGTGACAATTATGAAT
GTTTTTCTAAGCTTTTATTCGGTTTAGATAAGATTAGATAGTCCCATATT
GCAGTGTAGTCAGTGACCGCGCTTGGCCATTGCTTTCTCATACTTAGGTA
TACCATCAGTTCTCTCACTTTAGTTCACGCCACGATTTTGTTAACTGCTC
GACTATATCCTTGCCTCTTTGAATAGCACCTAGCTCTTCATGTTGTAAAA
ATGACACGATCGTTTTCCATTGTCAGTGACGTGGGGCTTGAACCAGTTGT
TCAGCTCGACCGTGTTCGACTCCCTCCCCCGTACGGAGAGTGACGCCCTG
GCCGACGGGTGGGTCGACTTCAGCCGCGGAGCCAGCTGTGATGGTACGTA
CGACCTGATAACACAACATACTACTAGCAAGTTTGCATTGGTCGGATAAA
ACTATAATTGTTTTTCATATCTTTCTAACGTTAACATTTCATATTTTCGC
TCATTTACTTTTTAGGCGACTACTACCGCGGGTCCCGCTACATCAAGGAC
AACGACCCCGCGGTCATGCTGCTGTTCGACGATAACGGCTTCATCGCTGG
AATCCAGATGGGGGTGAGTCTACGGAAGGTTTTTTATTGTATCTTAAAAA
TGTAAGTCACCAAAACAGGTCACTTCAGCCTAGACCGCGCTTCTTTCACA
GATTGTGACATGTACCATGGCCCGAGTCTAATCTCCAAGCAGATCTATCG
GTGGCAATGACAGTATCCGACTGGCAAAAGCAGACTGCTTTTTGCCAGTN
TCCAACTTAACTGGCAACGGAGACGGCTTTTTGCCAGTTGGATACTGCCA
TTGCCACCGATAGATCTGCTTGGAGATTAGTCCGAGTCAGCCATTGCGGT
TTTGTCATCTGAAATCACTTCTCCAAACTTCTCAAGCTATGTAGACCTCT
CTCCTTCAGACATCAATCCCTGAAAATATTCACTTATCATCTAATCGACC
TCCAGGCCCGCATAGCCGAACTCCCTGCCGGTATTCCCGCTGCTCAAGTC
ATGAACATGTGGAACTACGATGGTGACATGGTGGTCATCACTGCCTACTT
CCAAGAACCAGGTTGGTCACGCTTGCCCTAATGTCGCTTTTAAGTGGCTT
GGAACCTGAAAGTCGGCATTAGAAATGCCTTGGAGAGAGAATGCACCCTG
TGGTACTCTCCAAGCAGAGGAGTGGATCCGGCTGGCTTTTGACGTGTTTT
TAGGCGTTTTTGTCGGGCTTTCCATTTTGTCGCCAACCCACCGCTGTTGC
AATTTGCACTGTTTCAACTAAATCTTGTAATTAACAATTCCATGTGTCTT
TCTTTATGGCAGCGTCTGTGTGTACCGGCCGTTCGGACGCACACTTCACC
CTGCATGGTACCGGCGTGGGCCTGTACCTGCAGAACGGCCCCACCCCAGA
GACCGACTACGAGCTGATCCCCAGGGACGAGGTTGATATCGGCGCGACCG
CCTGGACCAAGGGCGGTTGCTTCTACACCATGGGTACGCTGAGATACATT
TATTTACATGTATTTGATTAGAGATCTAGGAACAGACTGACAGAAAGTTC
ACCAAATCCTTAACATTATAAGTGTATTGGAGGAGAATTGTCAAGTCGTA
AAGGTCAATAACAAAGCGATGAAAAAGTCGTTCCATTACATACTTGTGTC
CTGTCGGTCAACCAAGTTTACGGGCCGTCATTTCTGCCTATAGTCTACTA
ATGACGATTCTAACGCAACGTAACAAAGTTTTTGGGGAAAAACTCAGGAA
ACTAGATCTTCCCTGGTCTAGTCCATGCACGCACACAAAGCCTTTGTACT
ACAAGCCAGTATGGTGAGAGAAATCTATAGGCCCAAATGTCTCAGACAAA
TTTAACTTTTGCCTTTTCCCCTTGTATAGGCCAGCACTACTGGTACAACA
CGTCCGCCAGCATGGACTGTGACGACTTCTTCCCGGTGTTCCTGCTGTAC
AACTCCGGCAGGCTGAACGGCTTCGGCTTTGACATCAACGCCGACCTGAA
CAGCGACCGCTACGAGAAACCAGAATTAGGCTCATTGAGTGTGAGTGGTC
TATGATATACCATACTTCTCGCCTGTAGTCATGCATGACTGCCACATCTT
CGACATAGAGAGTGGAAAGGATAGAAGTGTACTACCAGCGATACCCGTCA
ACACGTGCCTGTCACGCGAGTCCGTAATGCCTTTATCACCAACCACCTAT
ATAGCAAGCACAATTAGTTTTGCCCCTTATCTTTATTTCCATGAAAAATG
GAGATATAGTTTTGGGTGTGTCTGTGTCTGTCTCATGTGTGTGTGCGTGT
GTGTGTGTGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTATGTGCGTGTGTGTGTGTGTGTTTGTGTACTGTAGG
CAGCACAACTCAAGAACCTCTTGATGGAATACAATGATATTTGGTATGTG
GTCAGGTGTTGGGACGCCGAAGGTCATGGTCTATTTTGGGCCCCCTGGTA
TAAATCGATGCGCCTTTCCTTATGGCAGCGTCTGTGTGTACCGGCCGTTC
GGACGCACACTTCACCCTGCATGGTACCTGCAGCAGAACCTCCGTTTTTT
GTACCTTTTGACCTGGACGTGCTATGGCCTTGTTTAGTAAAGGGTTGTTT
GTCTCTCCTGCTGCAGGCGTTCTTCCAGGATCAGGACACCCCGGCCTGTT
TTGCCCAGTCCATCCAGAAGGGCCTGACCACCATACATATCTACATGGAT
GATTCGCCCAGCTTCAACTTCTGTTAGACGACATCAAAAGTCACAGCAGA
AATCTGAAGTCCTGCAACACCTCTACCTGGGCAGCACACAAACATGGCTC
CCATTAGTCGCAATGTTACTCAAAACAACACATGATGCGTTGCTTCAGAA
ATAAATAAAAACATGCCAATG

Coding sequence (CDS) from alignment at Sc0000098:509564..514234+

>Blg01772.1 ID=Blg01772.1|Name=Blg01772.1|organism=Branchiostoma lanceolatum|type=CDS|length=855bp|location=Sequence derived from alignment at Sc0000098:509564..514234+ (Branchiostoma lanceolatum)
ATGAAGACTTTTGTAGCATTGGCGCTTCTCAGCCTTGTTTGTGTGGAGGG
GTGGCTCTTCAATGACGACGCTGAGTGGAACGACCTCAAAGTGACGTGGG
GCTTGAACCAGTTGTTCAGCTCGACCGTGTTCGACTCCCTCCCCCGTACG
GAGAGTGACGCCCTGGCCGACGGGTGGGTCGACTTCAGCCGCGGAGCCAG
CTGTGATGGCGACTACTACCGCGGGTCCCGCTACATCAAGGACAACGACC
CCGCGGTCATGCTGCTGTTCGACGATAACGGCTTCATCGCTGGAATCCAG
ATGGGGGCCCGCATAGCCGAACTCCCTGCCGGTATTCCCGCTGCTCAAGT
CATGAACATGTGGAACTACGATGGTGACATGGTGGTCATCACTGCCTACT
TCCAAGAACCAGCGTCTGTGTGTACCGGCCGTTCGGACGCACACTTCACC
CTGCATGGTACCGGCGTGGGCCTGTACCTGCAGAACGGCCCCACCCCAGA
GACCGACTACGAGCTGATCCCCAGGGACGAGGTTGATATCGGCGCGACCG
CCTGGACCAAGGGCGGTTGCTTCTACACCATGGGCCAGCACTACTGGTAC
AACACGTCCGCCAGCATGGACTGTGACGACTTCTTCCCGGTGTTCCTGCT
GTACAACTCCGGCAGGCTGAACGGCTTCGGCTTTGACATCAACGCCGACC
TGAACAGCGACCGCTACGAGAAACCAGAATTAGGCTCATTGAGTGCGTTC
TTCCAGGATCAGGACACCCCGGCCTGTTTTGCCCAGTCCATCCAGAAGGG
CCTGACCACCATACATATCTACATGGATGATTCGCCCAGCTTCAACTTCT
GTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01772.1Blg01772.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01772.1-exon-Sc0000098-1570713199:509564..510453Blg01772.1-exon-Sc0000098-1570713199:509564..510453Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:510639..510952Blg01772.1-exon-Sc0000098-1570713199:510639..510952Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:511275..511298Blg01772.1-exon-Sc0000098-1570713199:511275..511298Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:511540..511656Blg01772.1-exon-Sc0000098-1570713199:511540..511656Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:511779..511876Blg01772.1-exon-Sc0000098-1570713199:511779..511876Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:512269..512374Blg01772.1-exon-Sc0000098-1570713199:512269..512374Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:512626..512796Blg01772.1-exon-Sc0000098-1570713199:512626..512796Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:513193..513353Blg01772.1-exon-Sc0000098-1570713199:513193..513353Branchiostoma lanceolatumexon
Blg01772.1-exon-Sc0000098-1570713199:513980..514234Blg01772.1-exon-Sc0000098-1570713199:513980..514234Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000098genomeSc0000098:509564..514234 +
Properties
Property NameValue
GeneIDBlg01772