Blg01221.3 (mRNA) - B. lanceolatum

Overview
NameBlg01221.3
Unique NameBlg01221.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000158:222598..235243-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01221.3 ID=Blg01221.3|Name=Blg01221.3|organism=Branchiostoma lanceolatum|type=mRNA|length=12646bp|location=Sequence derived from alignment at Sc0000158:222598..235243- (Branchiostoma lanceolatum)
GCCCCCGTCACTTCTCACAACATATCCACGAGGAAACAGTTTCAAACAGT
CTCAAACGGTTTCAAAATGTCTCGTTCTGTCGTTCTAGCACTGCTCAATG
CAGTAGCCGTGACGCTGGCTTCCTCGACAGAAGAAGGACCACGAGGTGTC
GACTGTCTGAAGGCTGTAGAGAAGTGTGAGTCCATGGAGCAGTGTCGCCT
GGTGTTGCACTACTACTACAAAAGTTGCCGTCAGTCAGGTAGGGTGCTTC
TGAACTTCTAAGAGATGACGTTTCTTTAAACCAAATTTTAATTTAAAACA
ACTTGTCAATCTTAATACCTCTCTGTGTGGAGGTTTGGTATAGGTGTGAT
TGTTTGGTTGCTTGTGTGTCCATCGTTATTGTAATGCAATAGAGTGGATG
GTTTCCACAGACTATTAGTGCTCGGAAATAGACTAATAGAATGTTACATA
AAAGGTCCTGGAGTCGGTTATCTCATTTCCTGTTGTCAATTTCCCGCTAT
GTGCATCTCCGTACCGTTAGAAGAGCCAATAGAAAAAAAAATTGAATTAG
ACCGAATCAGCAAGTCATTCACAATGATAAGTAAGTCAAGCAATGTTCAG
AAGTAAAAATATTTCACGGAAGTGTAATATATTCGATTTCTTGTTCTTTT
GCAGCTGTCTGTGGTGCTGAAACGCCATCAATTCTTCGTTAGTCTTACCT
TCTGTCGTTGGCCCATTCTGCTTCCTAGTCAATTTGACTTCTTGTCTTGA
TATTAATCTTTTTGTAGCGGTCCTTAGGACGGGACGTTAAGCCGTGGTCC
ACTGTTCAATGCGCTTGTCGAAAACATCTAGGACCCCCCTAAAAGTAGTG
TATATAGCATTTGTCTTCTTTGTAGCTGTAACAACCGGAAGAATAGCTCT
TCAGTGGGCTTAAATGTTCAAGATAACTTCAGTTGTAACTCCTGATGACT
CCTCTCTGCAATGAACGACAAGGCGTTCTGGAGAGCAAACTTCATTTGTC
ACACCTCGTATGAGGACGACCGATGATTATGATGAACTTCAGTTTCAATC
TCTTTTAGACACGGTCTGTGTGGAAGACAGAGCAACCCAATGCCGAGATG
CTTACGTAGCCTTACAGCGTTACATGGACAAGTGCGATTGTGAGAACATC
GACAAGAACAATCTGGACCACTGTATGCAGACAGAACACAGACTGTTTCA
TCATCCCTGCAACGAGAAAGAAGGTAATTGTTTTCAAAATACCATTAGCA
ATGCGCAGAAGTAACAGAATAGAAACACGTTCCGTCTGTTACACTACGGT
TGCATTTGCGTCGGTGCCAGTAGGATGTGCAGCCCCGGCCGAGCCCCGAA
TCCACAAATTGGCCCGGTGAACTGCTGGAAACCGGGGTGGGGTAGGCTGG
CTCATCAGGGTGTTCTCACGATCAGCTTTCGACGTCTATTTGTTACCGGG
TTCCGTGTTGATTTTAACCCCGAGTTAGAGTTATCTCGGGGCCCGGCTGT
GCTTAAAATAGCCCGATAGGCACATGTTGCCTAACGGGTCACGTAGGGGC
TGAAAGGGGAAAACAGCCCGTAACATACAACCTGGCAGGGCCCCTTTTTC
AATTGGAGATCTTAGCATTAGCCATGATAAATAATGTTATTCTTATTAAG
GATATGTGAATGTCTTCAGTTTGAGACAAGCGGTGTTACTTGACTGAGCA
ATGACAGATTTTAATATTCTTGAACTGTGTTTCGTAACTTACCGTTGAGC
AAGTTATTTCGCATTATGTTTTTAATGACTAAGCAATACACGGGGAAACC
GAAAGCAAAAAAAAAAAATCAGCAGTCAGCTTACTAATAGGGACATTTTG
ATTGTCAGGCAAAGGTAGGTTGTTTAGAAAGGTTTGCCAACACCCAGTGA
CTACGTACTGTTTGTCTGTTTCGGATGAAGCGCCGCCTATCTTGTATCCT
ATATGCTCACGCTGCAGGACTTTCTTGCATAGGCAAGGAAGACGGCGTCA
GGGACAACACCAGGCACTACCATGTCACACTGCCACCTAGGCCCGTTAGC
TGCAACGAAGCTAAAGCCGGGTGCAGAAATTCAACGTACTGCAACGTGGT
TTACGTCAACTTTCGAGCAACCTGTCCGACAACTAGACACCAATGTACCC
CCACCATGATGGACAGGTGCAGAGAGTCACGTGACAGGCTGCGGATCACC
AGCCTGGGTCATTGCATCTGTCCCAAGGGCATGCCGGGAGAAAGAAAATG
TCGCCGCATCCTGTCTAGAATACATCGAGATCCTTGCAGACGTAAGTTTA
CAAAACGTAGCCATTTCAAAAGTTTCAAGTGGTATATCAAGGACTATATG
TTTATAACTTACCTAGTGTGTTATCATGTATGTTGTCTAGAAAATGGCAA
TGTGATATTTCAAATGGTATGCAGACTGATGTTTTGTTGTAAGCACTTTC
ACACTTCGGAGTAGGCATGCGCAGCGACAGGGAGTGTGGGCAATATGTCA
AAGGTGAAAAGCACATGAGACGTAAATAAAGCCTTGACATTGTTATGAAA
ATCGAGACAATGGTCAAGATGAGAACTGTTAACAAACAGGTGACCTTCAC
CTTTGACATCAGCCACAATTCCTGTCGCCGCGCATGCGTACTTGGCAGTG
TACGTTGATTCAATTCTTTGCAATTTGCAACTTCAGATCAAGACATCTTT
GACTACCCTCCAGAACCAAGGGAGGTTTTGCAGGACACGGGTAAGCACCT
ACGCACGACACGCTCATATGTTATGTTAAGGCCTGGTCATATTGCATATT
CGTTACACGATCGTCGCATGGTCGCTAACTAATGGCATTCTTGGGATAGT
CGTGCATATATCAGAAAAGTCAGCTAAACTACTTATTTTGATTTGCAAAA
TGCTATTATTCATCTTTTTTGTAGTTGGTTTTGTCACAGTCTGCGTGAAA
AGTCTACGTTATCTAAATTGCACGACGGCTTACGACAAATGTGACTGCTT
TATCATGTCTCTTGCCATGTATATATATGTGTCCGTGTGTATGTCAGTAA
TATCTTGTTACTTATAAGCTTTAAGTGACCATGGTTATATGTTGTGTACA
TCGCCTTACGTACTTTTTGTTAATGTCGATGCTATGAAAAATGGATGAGA
CGGATCAATTGATTAATAATACTATGAGGACAGAAGAAACATCATCGTCT
TCAATTAAAAACACGGGAGGAATGACAGTTGTTAGACTATTTCAACCACA
CTGCATTGTGATAAGCACATTTTGCAATCTAGGAAAAAATCATTCTAATG
TTACAACACGTCTGTTGGGTTTGGTATTTCAGAACCTACTAGATCAACTA
CAAGTGAAAGCGGTAGAACAAAGATAGGTATAATCCGTGGAAAATTTATT
CATACTGCACGTTACAAAATTTCGTTCCATTCATGCACATAATAATTCAC
CATCTCACGACTTCCATGGAGGACGATATGCATCTATACTATATAAATTC
TACATTTTTCTCATCATTCTTTTCACCATTTCGTTTTCCCATCTTGGTCC
TCTAATGCAGAATGTTCCTCCTATAGAGTTAAGAATAATGATATCAGAAC
TGTATGGGGTTTTTTAAAAAATATGTTCAGACTCTGAGGTAAAAATCTAT
GCTGCAAAAAAATCGGACAAGGAAAGTCCGTTCATTGAATGAAGGCACCA
GTTTCAAGAGTACCCTTTCGGCACATTTTAAGGCCTTCGTTTTTTCCATC
TTTTAAGTCGTAAATCTTAATAGAATCCAAATCTTTCCAAATTGCAGTCA
CTACTTTTGTATGTTCATACATCATGGCCTAACTCTTTAAAATTAATAGA
GAAAACTCAAATCTCTAATTCTCCCTTCATTTTCTGCAAGCATTAAAACA
AGCAACAGTCAAAACACGACGAAAAAAAAGACGTCATAGACAGGAATAAC
GCCTATTGATCTGTTTCTATCTCTATGACAGGACACACAAGCAGCTGCTT
CGACGCCTTTGACCGCTGTAACGCCAACTATGAATGCCGGACGTCCCTCG
CCCATTACATCAACACGTGCGAACCGGACGAGATCACCGGAACATGCGAC
CGACCGGCATGCATCGGGTCCATCCGGGACCTTTTCAAGTACGCGCCATT
AAACTTGAGCCAGCCTCTCGTGGAGTGCAGATGTGAGGAGCACGACAAGG
ACTGCGTCTCTCTGAAGAACGGCCTCCTACCTGTCTGTGCGCGGCCATCC
GCTCAAGTGCCCGACTGTTTGGAGTTGCATCGTCGGTGCAAGAATGGTCA
ACACTGTCGGTGAGTGTTTAACCATTTAAATCACCCTCACCTGGTCTACA
GAACGTTGCGCTTTTCCATTAATAGCAATCGGTGTTTACATTCTTGATTT
AATCATAGTGACAGCGACAGATTTTAGGCTGACCACTAATGGAGGTGTTT
ACGTACCACTCAACCGGATGATGGTGTTTTGGCTGTTTTTTTTCAGGGTC
TTTGCGCTCTAGATACATTAATATCAATATGTCATCTTTGCTTTTGATAC
TAACCTTTCCCGAAACTTTTTTTTAGTTAGAAAGGGTAGCGGGAGATTGT
GTGTCTACCTTTATACTGAAATGTGAATTAGTTGTGGGGGCATTTGTTGA
CAGTTGACTATACATCTAACGTTGGGTAACATAAATTCGGGATTTTTCCG
ATAATGGTTGACTGAAATCAATCTAGCAGAACAACAAACCATCCTTTTTT
TCTATTATTCTGTCAGTATCATTTACTATCTTTGCACTAATTTATATGGT
AGATTTTGTCTCTAGTCGTGCTGACACCATAATATTTCAACTTGAAACTA
CCGTCCGCCGCACGCACAATGACGGTGCTGTCGGACAGGGGGGCACATTA
ATTCGGGAGAGAAGATTCGTCTTGAATATCTTACCGCTAATCACATTTTA
TACAGCAGCTATTCGTTCCATCCTTGGCTTGAGGAGAGTGCTATGGATAT
AGACGTGTCCAAGTAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGACAATAAGGGACGGAGAGTTTTTGACGTCGCCAACTTCTAATGCATGG
TTATCGAAGCTTTTCAGACAGTGTTCTGAATGCGTTAGTCTGTCAAGTTT
GCATTTCTAGCGGTATTACTGATGTTGCATCTAGCACATATACCTAAATA
CCCCGTTTTCGAAAAATCCCGAATTTAAGTACCCCACGAATTTATGTTAC
CCAACGTTACGTAATCATACTAGTACTTGTAATGTAATTGTAGTCTGTAA
ATGCAACCACGGGCCAAGTCGGATTCGTCGTGCGATCGTCGTACAATCGC
TATCAGAGGGCATCTTCAGGATAGCCTTGCATGTGTCGTACACAATTTTG
CTGTCTTCTTACCGAAAGGTCTGTCTTAAATCCCTCTCGGCAGTTGGTTC
TGTCACAACCTGCTTGAAAACTCTACGACATCCAGTGCAGCATTCCCCAG
GTATAGTTTAGATATACAGGAGTGCATGGTACTATGGGGTGTTGGGTTGG
AGATCTGTTTTGACGTATCTTTTCAGGGTGGCGGAATTATGTCAGTAGAT
GTTACATCTACGCCAAAATAGTTACTCAAGCAGCTGGATAAAATTTTGAA
ATAGTCAGACGTTTCAGACATCATCCACTGTCTTCCGTTAGTGACTAAAG
GAAAGAACTGGAGAACCAGGTTTTATACCCTCAGGTTCTTCCCTTTAGTC
AGTTACGAAAAACTGCGGGTGCTTTCTGAAACGTTTGACTGCTTCACAGT
TTCATCAAGTTGCTTGGGTACAAGTTTTTGACGTATCTTATTACCTGGAT
GTGTAACCTACATGAACGATGTTACATCTCTTCTAGGCGGAATCCGTGTG
GTAACATGCTTGCCACCGTGCCTTGCGAATGCCGCGGGCGGGGCCGACGT
CATCAGCGCTGTTCCAAGGTCCTGAGAGAGATGCTTCACGTGGTCAACGA
CTGTGGAGGTACAAACTCATATACACGCCGCTAATATGTCAGCTTGTTTG
CATCGTGTTATATCCAGATTTAAAGCCCTCATGTTACTCAAAAAGTAGAC
ATGGTCACCTGGTACCAGTGGTAGCTAACGGCAGCTCTAGGTAGCAACGC
CTCCCTGCGATATTGAAATGCATCGCAAATGTTGACTAAATGTATACTAG
TACCAGGGAGGTTATATAGACCTCCTTGCTAGTACATCATGCAATACTTC
AAAAGAAATTCTGACATGCATTATACAGTTTGTAGTTGTCAGCATGGTAA
GAAATATTCCATAGCTCTTGAAGTCAACGAAGTAAGGGTGGGAGGCTACT
AATTAAGAATGAAAATTAACACCTTTTAACGTTTCGTTTTCCTCTTTTCA
ACAGAAAACTTCAGAAACTCACGGACAGTTACAGCTCGGCTTGAGGAAGG
CACCCCGACGTCCGATCTGCCATCCTCTGCCGCCCGACATTCTGCGACAT
GCGGGTATCGGCATTCTTCACCGAGAGCGACCTCGCCAACCCCGCTCAAA
ATCAGCAACACCACAACGTTACTCACCATGCCAGGTAAGGGATTGTACAA
TATTTAGCGGGGAAGCTCGAGGGTTGATGCCCTGGGGACGGGCCATTAAA
CGTTTTTGGCCAGGGGGTGAGCCATTGAAAATATAATTTTCGTGGGGATG
GCCATCGAAACAAAAATTGAATAGGGAGAGAGCAATCGAAAAAGTAAAAA
TCCATTGTACAGTCCGAAGATCTGACAATTTTGTAAAATATACTAAAACA
TGGAACTTAACGTTAGCTTGATGTCGTCACCTTTGTACATTATAACTATC
CTTGCGCATAAATGTATTGTTTGATGTAGAATGCAAGATTGTATCTTAGT
CATTTTAGGATGGGGTTTAACATACTTTTTTTATCATAATTGTGAAACAC
AGATACGCTGGTCGCACCACAAAGTCAGGAGCCTGACGCTGGGAACGATG
ACACGTCCACTCAAGAGCGACCCCATGCGCCCCGATTGTCAACTGCTTCT
TCTGTGAGTCATTTTTCTAGTCTGCGGCGGTTCAAAATTGAATGGAGACT
CACTATGTTATGTGCAATGACAGTAATTCTGATGTAAAATAATTAAGAAA
AAAACATACGGATATCATGCAGTGAAATGTTCATGGCATCTTACTGATTT
ACATCTTTCATGGTACGCTACTGAAAAGCAACTGAAAGAAACCTACTATA
TGTGGGACTCAATTATGTATGTAATACATATTCCACACAGCAAATTGTAA
AGACCCCTCTCAGTGGACCCGCGGCACGCTGGCGGCGTCACTGCGTCCTA
AACAGGATTTGTTTTACCCTTTATTTTATAATGGGAATATCATTCAAAAC
GTACAAGTATGACCAAAAAGACAACAAAACACACAAACCTTAGATTCGTT
TTTTCTCAATTCGATCGGTCGCAGCGACGCCGCCAGCGTGCCGCGGATCC
AGTGAGAGGGTGTTTAACTTCAAAGTAGAATAGTACTAGCATTGTCCATA
ACCGTATATATTTGTAAGTCAGACTTTCACAATGTCCATGTATTCTTAGT
TCTATAGTGCACAGTGGATGACGTAATAAAGACTAGTATAGATGGATTAT
CGTGTTTTTCCTAATATTGTCTGTCAGCAAATTGCAAGTCAATCAAAATA
CAGCAAAAGACAACGCCCTTTTCAGAATGGCTATGCAGCAAGCTTAAGAT
TAAGAGTTTATAACGATTGATGCACCTCACGCACATCCTCGTTCACCAGG
ACCCTTCCGCTCCACGTTACATCGCTCGCAGAAAGGGCCCTGGTAACACG
GGATGGCATCCATGGTTATTACGATATCGCCACCAAAACAGCTTCAGCCA
ATCAGAGGGGTTAAAACCCGTTTGCTTCCTCTCATCGGAAGCGAGCGCGC
AAAGAACGCTGGGAAGCTATCAACCAATCAGGTTACGTGTTACGGC

Coding sequence (CDS) from alignment at Sc0000158:222598..235243-

>Blg01221.3 ID=Blg01221.3|Name=Blg01221.3|organism=Branchiostoma lanceolatum|type=CDS|length=1515bp|location=Sequence derived from alignment at Sc0000158:222598..235243- (Branchiostoma lanceolatum)
ATGTCTCGTTCTGTCGTTCTAGCACTGCTCAATGCAGTAGCCGTGACGCT
GGCTTCCTCGACAGAAGAAGGACCACGAGGTGTCGACTGTCTGAAGGCTG
TAGAGAAGTGTGAGTCCATGGAGCAGTGTCGCCTGGTGTTGCACTACTAC
TACAAAAGTTGCCGTCAGTCAGACACGGTCTGTGTGGAAGACAGAGCAAC
CCAATGCCGAGATGCTTACGTAGCCTTACAGCGTTACATGGACAAGTGCG
ATTGTGAGAACATCGACAAGAACAATCTGGACCACTGTATGCAGACAGAA
CACAGACTGTTTCATCATCCCTGCAACGAGAAAGAAGGCAAGGAAGACGG
CGTCAGGGACAACACCAGGCACTACCATGTCACACTGCCACCTAGGCCCG
TTAGCTGCAACGAAGCTAAAGCCGGGTGCAGAAATTCAACGTACTGCAAC
GTGGTTTACGTCAACTTTCGAGCAACCTGTCCGACAACTAGACACCAATG
TACCCCCACCATGATGGACAGGTGCAGAGAGTCACGTGACAGGCTGCGGA
TCACCAGCCTGGGTCATTGCATCTGTCCCAAGGGCATGCCGGGAGAAAGA
AAATGTCGCCGCATCCTGTCTAGAATACATCGAGATCCTTGCAGACATCA
AGACATCTTTGACTACCCTCCAGAACCAAGGGAGGTTTTGCAGGACACGG
GACACACAAGCAGCTGCTTCGACGCCTTTGACCGCTGTAACGCCAACTAT
GAATGCCGGACGTCCCTCGCCCATTACATCAACACGTGCGAACCGGACGA
GATCACCGGAACATGCGACCGACCGGCATGCATCGGGTCCATCCGGGACC
TTTTCAAGTACGCGCCATTAAACTTGAGCCAGCCTCTCGTGGAGTGCAGA
TGTGAGGAGCACGACAAGGACTGCGTCTCTCTGAAGAACGGCCTCCTACC
TGTCTGTGCGCGGCCATCCGCTCAAGTGCCCGACTGTTTGGAGTTGCATC
GTCGGTGCAAGAATGGTCAACACTGTCGGCGGAATCCGTGTGGTAACATG
CTTGCCACCGTGCCTTGCGAATGCCGCGGGCGGGGCCGACGTCATCAGCG
CTGTTCCAAGGTCCTGAGAGAGATGCTTCACGTGGTCAACGACTGTGGAG
AAAACTTCAGAAACTCACGGACAGTTACAGCTCGGCTTGAGGAAGGCACC
CCGACGTCCGATCTGCCATCCTCTGCCGCCCGACATTCTGCGACATGCGG
GTATCGGCATTCTTCACCGAGAGCGACCTCGCCAACCCCGCTCAAAATCA
GCAACACCACAACGTTACTCACCATGCCAGATACGCTGGTCGCACCACAA
AGTCAGGAGCCTGACGCTGGGAACGATGACACGTCCACTCAAGAGCGACC
CCATGCGCCCCGATTGTCAACTGCTTCTTCTGTGAGTCATTTTTCTAGTC
TGCGGCGGTTCAAAATTGAATGGAGACTCACTATGTTATGTGCAATGACA
GTAATTCTGATGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01221.3Blg01221.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01221.3-exon-Sc0000158-1570713199:235006..235243Blg01221.3-exon-Sc0000158-1570713199:235006..235243Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:234021..234185Blg01221.3-exon-Sc0000158-1570713199:234021..234185Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:232953..233261Blg01221.3-exon-Sc0000158-1570713199:232953..233261Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:232504..232557Blg01221.3-exon-Sc0000158-1570713199:232504..232557Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:230935..231262Blg01221.3-exon-Sc0000158-1570713199:230935..231262Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:224586..224707Blg01221.3-exon-Sc0000158-1570713199:224586..224707Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:224010..224189Blg01221.3-exon-Sc0000158-1570713199:224010..224189Branchiostoma lanceolatumexon
Blg01221.3-exon-Sc0000158-1570713199:222598..223641Blg01221.3-exon-Sc0000158-1570713199:222598..223641Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000158genomeSc0000158:222598..235243 -
Properties
Property NameValue
GeneIDBlg01221