Blg01086.7 (mRNA) - B. lanceolatum

Overview
NameBlg01086.7
Unique NameBlg01086.7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:8446791..8451066+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01086.7 ID=Blg01086.7|Name=Blg01086.7|organism=Branchiostoma lanceolatum|type=mRNA|length=4276bp|location=Sequence derived from alignment at Sc0000003:8446791..8451066+ (Branchiostoma lanceolatum)
GACATTACAAAATGTTGCTGACATTTTGTTAGAGTTATAAACGTTCCTCA
TAATCACTTTCACTATCGTTAGCGATAATCCAACATATTTCGACAGTCAT
GAGACATCAGGTTAGAGGTCATAGGTGAAAGGTCTTCCTGAGAAAATTTG
GCGCGGGTATATTGCCGGGGAAAAAAGTCAAGAAAATCTCTTGTTTCTGC
TCTATAGGCGTTTGTTTTCGGTGATTATTTTGTTAGAGCTGTAAATAAAA
ACTATTTTCTCTAGCAATGGCTGGTAACTTTTGGCAGAGCTCGCATTGGT
AAGTTGTAATGTTTTATTTGATTTTGAGGGGGGGGGGCATTGGCTAACTT
TACTGTTTTTCATTGTTGTTAGTCTGGAATGAATACAGGAAATTGAATCA
TAGACCAATGTCTTAAGTAATTTACACCTTCTTTTCCATCACCAAGAAGG
TGTTTTCGGGATTGTGTGTTTGTTTGTTTGTGAACAGCATGACTGGAGAA
GTTAAGTGGATGGATCTTTATGATATTTTTGGCATGTTGGTGGGTGTTGG
CATGAAGAAAAAATTATGAGTAGATTATGGGTTACCATAGCGAATTTCCG
TGGTACCGCAGCAGTACTTCAGGTTTTGGTGTGTCTTGTTCTGAACATCC
TATGGTCATGATTTTTGTGTTGTAGATAGCTCTTGTGCTCAGGAAGAAGT
GACATAAGTTTGTGTCCCTATCAGCTTCCTTTGGAACTGCAGGGGCATTT
TAGCTGCAGACTTTGAAACAGGATAAATCAAGAAGGGATGAATAAATCTT
CGTCTGTTGTTGTTTTGTAGTCAACAGTGGATCCTGGACAAACAAGATCT
CCTCCGTGACCGGCAAGACGACTTGACCAACTTTCCCGACGATGAATACC
AGAAAGTCCACATCTTCTACTGTGGTGGTAAGACACCACAGTTCTCTATA
GATAAACCATCATTCTATTTCAACCGTGAGAAACTCGAAACAATGCTATG
AATCTTATTGTTCTTATTGTATACTTTCTAGATGCTGTTTACAAACTACA
TACTGCATAAATTGTGAAAGATTCACGGTGGTTTAATGCGTTTTAACTAT
TTATTGGAATGCACTGGAATACACATACTAGTAACGAAAGGTGAAATACC
AAAGTACAGTATGCTTAGAGAAGTTAGGGTTACGATTAACTCAAAGTCTA
AACAATTTTATGTTTACATTTGGAATGGTCATGTGTGCTAATTATTCATA
CCCGGCTAAACAAACATTGTAGTCAGTAAATGAAGATAAACATGGTGATG
GGCCAGTATCAACTATAAAGATGAGTGAGAGTTCTATAACATTTCATTTT
CTTTATTGTATAGATATGATATAAATGTAACCACTTTTTTTCAGTAATCC
AGGCAGTCGGAGAACAGTTGAAACTTAGACAACAAGTCATCGCTACGGCA
ACAGTTTACTTCAAAAGATTTTATTCCAAGTGAGTACTCATACTCCTAAC
CATATCACATCTTGATTGTATAAGTATATGCAGGTTTCGCATATCATTTC
TGTAAGTTTATATTTTCATAATTTTTTTAATTTTTGACAAAAGGCAATCT
ATACCCAGCTGTAGTATCAAAAGACAGCCCACACCTGGAAGAGTTTATGT
GTACTTTTTGCCTGTTATTATATGAGGTAAAAGTTGTATTAGCTGGTTCA
TGGTTTAAACTGTACGTGTACAGGATGATGCATTGTGGGTAATATGTCAA
AGGTGAAGGCCCCTGAGATTTAAACAAAACACATCTGGATATGTAGCCAG
CATGGTCTAGACAAGAACTGTTTACAAGTTCTGTATCTGTATAGCTGGTA
TAACTGCCCTTCGGCGTAACACACCAGCTTCATAACATACCATCTTGATG
TGTAAACACAGTTTAAACTGTGAATCGCTTCATTGTACACATATCTGCTG
TTCCAGGTACTCCTTTAGAACAATAGACCCACTATTGATGGGACCTACCT
GTGTGTTCCTGGCATCTAAAGTAGAGGTGAGATTTGTTACCCTTTCAATT
ATGTTTCAAACATGTTGAATACTTTGGAAGTTGGACTTATTGTTTAGCTG
CTGCTTGCAAGTTGTTTTATTGAACAACTGTTTGTGTTTCCTACATTTCA
GGAATTTGGTGTCATATCAAACAGTAGACTTATAACAGCCTGCCAGACTG
TCAGTAAGTACCTTAATTGTGTCTTCATGTTTATTCACAATTTTTGGCAA
CACCTCGTGTGCAGAAGTCTTTAATCTGACTCTAGCCTACTGTTTTTGTA
ACAGCACTATTTTTCTAAATAGACAACTTCAGCAATACTGTACACAAGAC
TTGAACAACTTGATTTTTGCAATCTTAAGATATCTTTGTCTTAAGAATTG
CCAATTGTTTCCCTTCCATTGCAGTAAAGAACAAGTTCTCCTATGCCTTC
AACCAGGAATTTCCTTACAGAATAAACCATGTAAGTTCCCACTTCTATAT
GCATTCTAGAGGTCAAAGTTTATGTTAACCTTTAGATGAGTAGTGAAAAA
GAAGATTCATTTTCTGTTAAATGTTATGAAGTATAAGCTACGTATCAAAG
CTATATAATTATAGTGTCATTTTTCAGTAACAACTGCTATTGACAGAGAA
CTCCATGATGATGTATTGAATCTTTGATTTGATATGTTAGAGTTACCCTT
TTGAGTGTCAGTATTTATCTAAAGTATGCGATATGATTTTTTCAGGTACT
AGAATGTGAATTCTACCTATTAGAAATGATGGTGAGTTACAGTCTTGTTA
TATTTGTCACATGTGAGAGAAAGAGCAAACTTGAGAAAGAGATATGAAAA
AAGAGGAAAAATAGATGAAAAGAGGGAGCGAAATGGGAGGAGGAAGGGAG
GAGCAGAGAAAAAAAGGAGAGTTTAACTTTATGTTTACATCTATGTATGT
GACAGTATGTCCTTCATAACTTTCATGAATTATGGGAATCTTATATTGAA
AACTCTCACCATGACATATTGGCAACAAGATGTCTACCGCTCCAATTTGG
TGAGAAAAAACAGATGTTCTGCTACAGTACTGTAATTATTGTTTCTTTCA
CTGTAACTTTAAGTTCACTGTTTTCACTGTCACCTCTGTACCGTGAACTT
ATCATCACCGTGAAAAACCTATTTATGATTTCTCCACACATCCTTTCTGT
AAATCAGTTTCTACCACCGTGAAGTTAAAGTTCAGTGAAAATGTCAATTT
TTGTTACACAGTGAAATTTTGCTACCGTGAACTTAAAGTGATTTACAGTA
TCATACCAGTAACGAGCGACTAGGGGGCCCCAAATCTATTCATTTCGAGG
TCTCATCAAGACCTACCCACCGACCAAATATGGCGACAATCCTTCCAGGC
ATTCTCGAGTTATCGTGTTCACAGGCAGACCAACACACACAAGCGCTACC
CAAAGCATAGCCTTCTGGCGAAGGTAATAAGGTCTTTATTTCTCGAACAG
GATTGCTGCTTGGTGGTGTACCACCCCTACCGACCTCTGACCTCATATGT
ACAGGACATGGGACAGGAGGACACAGTCTTACCTCTGGCATGGTGGGTAC
TAAACAGCCAAATTTGTGCCTAAACAGGCCTAACTTTTGAAGTCTTAAAG
CAAGCAAGCAGTATTAGGGTCTGAAAAATCAGATTTTGAAAGGCAATTTA
TTTAGTCATTTCTATACATGTTTAGTTCAAACAACACCATTACAATATCC
TTGATGCAAAGATATGACGTTGTTATGATGTGAGAACTCATTGAAAATTG
TGGCTGGAGTTTTTGTAGGCTCGCGAAACTAAGGGGATCATTGTACGGCA
GATTTTGCGCCATTTTAAAGCCCTAAAACTATGAAGTCATATATGCAAGT
GTGCTAAACAATGTTAGTAAATGTCACTACTATAAAGATTTCACCTTTTT
TTTATTTCAATTTTTTGGCCCTAATATTGCATCAATGAAAGAGACAGTAA
TCAGACACATCTAGTACAAATAGAATAACTTTGTTATTGATTATGTATAA
TTAGAAGCCAAGACACCCCATTTTCCAAACACATGTCTACCTACATGTAC
ATGTGTAAGTGTTAACAAGTCTTATCACTTTTTCTGCTATTGTTTTCAGG
CGAATAGTAAATGACAGTTATCGAACAGATGTTTGTCTACTGTATCCTCC
TTTCATGATCGCACTAGGTAAGTTGTCTTTTACAGTGTTACTGTGATTAC
TGATTGATAGTTACTGTAGCTAGCTG

Coding sequence (CDS) from alignment at Sc0000003:8446791..8451066+

>Blg01086.7 ID=Blg01086.7|Name=Blg01086.7|organism=Branchiostoma lanceolatum|type=CDS|length=627bp|location=Sequence derived from alignment at Sc0000003:8446791..8451066+ (Branchiostoma lanceolatum)
ATGGCTGGTAACTTTTGGCAGAGCTCGCATTGTCAACAGTGGATCCTGGA
CAAACAAGATCTCCTCCGTGACCGGCAAGACGACTTGACCAACTTTCCCG
ACGATGAATACCAGAAAGTCCACATCTTCTACTGTGGTGTAATCCAGGCA
GTCGGAGAACAGTTGAAACTTAGACAACAAGTCATCGCTACGGCAACAGT
TTACTTCAAAAGATTTTATTCCAAGTACTCCTTTAGAACAATAGACCCAC
TATTGATGGGACCTACCTGTGTGTTCCTGGCATCTAAAGTAGAGGAATTT
GGTGTCATATCAAACAGTAGACTTATAACAGCCTGCCAGACTGTCATAAA
GAACAAGTTCTCCTATGCCTTCAACCAGGAATTTCCTTACAGAATAAACC
ATGTACTAGAATGTGAATTCTACCTATTAGAAATGATGGATTGCTGCTTG
GTGGTGTACCACCCCTACCGACCTCTGACCTCATATGTACAGGACATGGG
ACAGGAGGACACAGTCTTACCTCTGGCATGGCGAATAGTAAATGACAGTT
ATCGAACAGATGTTTGTCTACTGTATCCTCCTTTCATGATCGCACTAGGT
AAGTTGTCTTTTACAGTGTTACTGTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01086.7-exon-Sc0000003-1570713199:8446791..8447088Blg01086.7-exon-Sc0000003-1570713199:8446791..8447088Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8447611..8447717Blg01086.7-exon-Sc0000003-1570713199:8447611..8447717Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8448185..8448269Blg01086.7-exon-Sc0000003-1570713199:8448185..8448269Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8448747..8448816Blg01086.7-exon-Sc0000003-1570713199:8448747..8448816Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8448942..8448993Blg01086.7-exon-Sc0000003-1570713199:8448942..8448993Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8449215..8449270Blg01086.7-exon-Sc0000003-1570713199:8449215..8449270Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8449536..8449571Blg01086.7-exon-Sc0000003-1570713199:8449536..8449571Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8450291..8450382Blg01086.7-exon-Sc0000003-1570713199:8450291..8450382Branchiostoma lanceolatumexon
Blg01086.7-exon-Sc0000003-1570713199:8450940..8451066Blg01086.7-exon-Sc0000003-1570713199:8450940..8451066Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01086.7Blg01086.7-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:8446791..8451066 +
Properties
Property NameValue
GeneIDBlg01086