Blg01066.1 (mRNA) - B. lanceolatum

Overview
NameBlg01066.1
Unique NameBlg01066.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:5826070..5829883-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01066.1 ID=Blg01066.1|Name=Blg01066.1|organism=Branchiostoma lanceolatum|type=mRNA|length=3814bp|location=Sequence derived from alignment at Sc0000003:5826070..5829883- (Branchiostoma lanceolatum)
GAATATGACGGCGACGATTCAATACACCATGGTTTGGGTGGACAATCGGC
TGGCAGAGCTGACCAGTCATGTGACCCCGGTTTCCAGTACTCTCCTCTGG
GTGCCTCCACTCGCCTTCGGAGCAACCGTGCGGAGAATCACGCACATCAA
TGATGATGGGGAAGACAACAGCACAATAAACATGTGGCTTCAGCGTCAAG
GGTTCATGTTTTACAAAATCACGTAAGTCCTCAATAAAAAAAATGTGACG
ATTGATTGTTCTTACAGTTCTTACTGATGGTACAATGTGAGGGAGATATG
TGGGGACAAGTTTTTGGGTCAAGGTCATTTAAAGATCTGTGAAAATGTGA
ACACCATTTATAACATAGAAAGTTTAAACCCATTTCTCTCGTCACAGGAG
AAAGCTGGAGTTGATTTGTCCGCCGAGTCTGGAAAAATACCCATTTGACG
ACTATGAGTGCAGCATTGAGCTCCATGGATGTAAGTGATTTTTTTGTATG
CATCCTAACTTAAAACGCCCGAGCGTTGTGCCTTCTTTATTGATGAATAA
CTTCCAAATGACACAAGTATGAAATTGCCATCATTTACCTGTATGGAATT
ATAGCAGTTTCTCATTAATTATGCAAATTAGGCCTACATTTGCATATTTT
TTATCTATCAAAATTCCTCAGTAACAAATTCAAATTCCTCAGTCACATAT
GTCAATAGTCATATCATGGAACACAGCGGGTTTTTAAACTTGTCTCATTA
ATTATGCAAATTAGAATCTGATTTGCATGATAATCGTCCAATCATACAAA
GCATCACGTAAGCTATCTACATACCAAAAAACATTACCATCCATCAAGCC
TATCTTGAGTTATAGTATTTTCTCATTAATTATGCAAATGAGGTCTTCAT
TTGCATAATTGATATCTATTAATATTTCTCTCTTCTTCAGTTACATATGT
CACATGTTTGAGAGTCCTATCGTGGAATTTGGCGGATGTATAAACTTTCC
TCATTAATTATGCAAATTAGATACTGATTTGCATAATAAGTATCTAATCA
TGTACATCATCACCCAAGCTATCTACTTACCAAAAATCATAAACATCCAT
CAAGCCTTTCTTGAGTTATTCCCTTTCAAAGTCTGAACCAAAACCTGATC
CTGCAGTTCCAAAAAAAGCCGCTAGGGGGCCAAAACCTATACCACTCACT
CTCTGTCCAAAGAGCTATCTACCACTCAAAAATCAGTTCCATAGCTTGTC
CAGAACACGAGATATTGAAACAGGAAGTTCCGCTGCAGTACCGTAACAAG
CCGCTAGGGGACCCAAAATCTAATCATTTCCTAGTCTCATCAAGACCTAC
CCACCTACCAAATATCAAGACAATCCATCCAAGCCTTCTCGAGTTATGCT
GTACTTTACAAACATACATACATACATACATACAAACGCTACCCTCTGCA
TAACCTTCTCGGCGAAGGTAATTAGATCAACTTCATATCCGACACTGTTG
GAGGGGGAGGGGGCACAGACCTTAAGCTTGTTAGTCAGTGTCATTTGGCT
GTCCACCGCCAATTCTATACACATGACATGATGAAGTTGTTGTCTTTTGT
ATAGAATCTAGGTGCATTTAAAATGTAAACATACTAGAACAAAAATTGAC
AGTTCCAAGTTCTGTCATATGTTCTGAGGGGCTTCAGCAAGGAAGTGATG
AAATTGTACTTTTCTTAGTTTTGACACTTTCCTCCATCTAACCACTATCT
AGACGGCGGAGTTGTCTTCCCCTTACGTCAGCCATCGAAGTCTTACGAAG
CGGGACCTGTCGAGGTGGACATGACTGCCGTGACGTCACAATTCGTAATG
ACTGGACTGAAACTCAGTTCAAGGGTTACCCCTCTCAATAAGCACACAGG
TATTACAGTCACGACGATCAGTNTTTTGACACTTTCCTCCATCTAATCAC
TATCTAGACGGCGGAGTTGTCTTCCCCTTACGTCAGCCATCGAAGTCTTA
CGAAGCGGGACCTGTCGAGGTGGACATGACTGCCGTGACGTCACAATTCG
TAATGACTGGACTGAAACTCAGTTCAAGGGTTACCCCTCTCAATAAGCAC
ACAGGTATTACAGTCACGACGATCAGTTATGCATTATGCCAATGCGTTTG
TCATAAATTGTCACCATATCATACATTAAACCGACATATATAACGCTACA
TTGATTTATTTTTCAACGTGTACAGGATGTGAACTGTTTGGAGCCAACTG
TACCTTCCCTGCAAACGACTGTCCGCTGATGAAAGGTTGTAGCGAGGAGA
GTGACGAATGTTACTGGTGCAAACATTTCGTGGGAACATGCAGCTACATG
AGCGCTACTGACCAGTGTTCCAACACCTCATCGGGTAAAACTGTACACTT
TGTTTGATCTATTTAGAATACTTGGCGATGATGATGTATCGTCGAATAAT
AAGAGAACAATCACGTGCAGTAATAAACCAGTTAAGAACCTGGTTACATG
TTCTATTTCGGCAATTTATCAATCTGCATTCGTGCATCTTGACCTTTGCA
CTCCCAATTGCCTGTTGGGAATGCCTGTGTATCATTTGTGATCATTGATA
GCCCTTGTACGAATCAAGTACATCAAAACTTGCCACTAAATTGTTTCGAA
AATGAATTCTAATTGATGTAACAAACTAAAACCCTATAAAACGTTCATTC
TTCAAAAGACTCACTCTAATCTTACTTTACAATGTTGCAGGACTGGCCAC
ACTTGAGGTCCAGCTGAGCTTCTCTCGCAGAAGATGGAGTCACGTGTTTC
GAACCTTCGTCCCAAGTATCGTCATCGTGGGCTGTTCCTGGATTTCCTTC
TGGCTCCATCCGAGTGACATCACGGCAAGAGTCCAGCTGTGTATCACGGT
ATTACTTGGCCTCATCACCATGGCCGGCAATCGTAAGGAGCATGGGGTAA
GACTGTCTGCCTGAATATTGTGAAATTTCATGTCTAAATGCTACCGTGTA
CTGTACGTATGTATACGGTACCTGTGAGTCATGTAGTTTTGTCCAGTTAT
GTTTTTGATAGATAGATTGACCACAGGAAGATGAGCTTCAATGTACTAGT
ATAATTGTGGATCTGAATAAACTCAAACCACCAGAGAATCCCTTCAATGA
AGCCATTCACATGCCCCTACTTGCACATGGGTGCGTTCGGAACTGAAGGG
AGAACGTCAGCCTCCAACCATGCGACTTCTCTTTACAGATTACAGTCGTA
CGGGCAGAAGATGTCTGGATGTGCGGTGGCGTCATCATCGTCACGCTCGC
TCTGTTTGAGACAGTTGTCGTCAACTCCATCCTCCGTGGAAATGTGAGTT
AGATAAAATGTATTAGTCACATCTATTCAATCTATTCTATCGAAGCAAAA
TGAAACATCTATTCTATCGAAGCAAAATGAATCTACACGTTGCATTGCTA
AAGGCTTTACAATGTACGTGAATGTCGTAATTATTTCCACCCCCCTCCTT
ATCGCTGCGGTACTAGCGCACGGTGTCATCTCACAATCAGGTGCCCATGA
ATATATATAGCCTCATTGGTTGAGCCAATTTGATGGACTGTCTCCCCTCT
CCCCCAAATGCAGCTCCCCTTCTGTAAGAGCCGTGGAACACGAGTTGAGC
CGATCCAAGGGCCTTCAACAGCTTGGGCTGAAGATGAAGAAAAAGAAGAA
ACATCGAGCGCATCTAACGAAACTACAGTCAGTAGGGTCGACTTCTTCTC
CAGAATCCTGTTCCCGATCGGTTTTACTGTCTTTGTAGCCGGATTCCTTC
TGTACTATATTTAG

Coding sequence (CDS) from alignment at Sc0000003:5826070..5829883-

>Blg01066.1 ID=Blg01066.1|Name=Blg01066.1|organism=Branchiostoma lanceolatum|type=CDS|length=1119bp|location=Sequence derived from alignment at Sc0000003:5826070..5829883- (Branchiostoma lanceolatum)
ATGACGGCGACGATTCAATACACCATGGTTTGGGTGGACAATCGGCTGGC
AGAGCTGACCAGTCATGTGACCCCGGTTTCCAGTACTCTCCTCTGGGTGC
CTCCACTCGCCTTCGGAGCAACCGTGCGGAGAATCACGCACATCAATGAT
GATGGGGAAGACAACAGCACAATAAACATGTGGCTTCAGCGTCAAGGGTT
CATGTTTTACAAAATCACGAGAAAGCTGGAGTTGATTTGTCCGCCGAGTC
TGGAAAAATACCCATTTGACGACTATGAGTGCAGCATTGAGCTCCATGGA
TACGGCGGAGTTGTCTTCCCCTTACGTCAGCCATCGAAGTCTTACGAAGC
GGGACCTGTCGAGGTGGACATGACTGCCGTGACGTCACAATTCGTAATGA
CTGGACTGAAACTCAGTTCAAGGGTTACCCCTCTCAATAAGCACACAGGA
TGTGAACTGTTTGGAGCCAACTGTACCTTCCCTGCAAACGACTGTCCGCT
GATGAAAGGTTGTAGCGAGGAGAGTGACGAATGTTACTGGTGCAAACATT
TCGTGGGAACATGCAGCTACATGAGCGCTACTGACCAGTGTTCCAACACC
TCATCGGGACTGGCCACACTTGAGGTCCAGCTGAGCTTCTCTCGCAGAAG
ATGGAGTCACGTGTTTCGAACCTTCGTCCCAAGTATCGTCATCGTGGGCT
GTTCCTGGATTTCCTTCTGGCTCCATCCGAGTGACATCACGGCAAGAGTC
CAGCTGTGTATCACGGTATTACTTGGCCTCATCACCATGGCCGGCAATCG
TAAGGAGCATGGGATTACAGTCGTACGGGCAGAAGATGTCTGGATGTGCG
GTGGCGTCATCATCGTCACGCTCGCTCTGTTTGAGACAGTTGTCGTCAAC
TCCATCCTCCGTGGAAATCTCCCCTTCTGTAAGAGCCGTGGAACACGAGT
TGAGCCGATCCAAGGGCCTTCAACAGCTTGGGCTGAAGATGAAGAAAAAG
AAGAAACATCGAGCGCATCTAACGAAACTACAGTCAGTAGGGTCGACTTC
TTCTCCAGAATCCTGTTCCCGATCGGTTTTACTGTCTTTGTAGCCGGATT
CCTTCTGTACTATATTTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01066.1-exon-Sc0000003-1570713199:5829662..5829883Blg01066.1-exon-Sc0000003-1570713199:5829662..5829883Branchiostoma lanceolatumexon
Blg01066.1-exon-Sc0000003-1570713199:5829404..5829486Blg01066.1-exon-Sc0000003-1570713199:5829404..5829486Branchiostoma lanceolatumexon
Blg01066.1-exon-Sc0000003-1570713199:5827780..5827926Blg01066.1-exon-Sc0000003-1570713199:5827780..5827926Branchiostoma lanceolatumexon
Blg01066.1-exon-Sc0000003-1570713199:5827500..5827658Blg01066.1-exon-Sc0000003-1570713199:5827500..5827658Branchiostoma lanceolatumexon
Blg01066.1-exon-Sc0000003-1570713199:5826938..5827143Blg01066.1-exon-Sc0000003-1570713199:5826938..5827143Branchiostoma lanceolatumexon
Blg01066.1-exon-Sc0000003-1570713199:5826541..5826645Blg01066.1-exon-Sc0000003-1570713199:5826541..5826645Branchiostoma lanceolatumexon
Blg01066.1-exon-Sc0000003-1570713199:5826070..5826270Blg01066.1-exon-Sc0000003-1570713199:5826070..5826270Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01066.1Blg01066.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:5826070..5829883 -
Properties
Property NameValue
GeneIDBlg01066