Blg00882.0 (mRNA) - B. lanceolatum

Overview
NameBlg00882.0
Unique NameBlg00882.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:3486413..3491739+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00882.0 ID=Blg00882.0|Name=Blg00882.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5327bp|location=Sequence derived from alignment at Sc0000003:3486413..3491739+ (Branchiostoma lanceolatum)
TATGGTGGTTGTTCTCGGCCACACGGGATATAAACAGGAAACAGTCCGTC
AAAGCCACCTGATTTTTCTCCCAGAAGGGTGTTAGTCGAAACAGACTTTC
TTACTGGCTTATTTGGTTGGCATTTCTGGTCAACTAAGACGACAAAATCA
GCCTCTAAAAATGAGGATCGTTGTAGCTTTTGTATCGGCCGTGTTGTTGG
CACTACAGCTGGCACCGACCTCTGCGTTAGTCATCCGCCCTCGCCGTGAA
CTCCCGGACTTCTTCAGCCAGATCCTCCAACGGGTCAAGAAAGATGCCGT
GGTGGACGATAGCAGCAATACTGGGGAAGAGCTTAAGGTAAAGTATGATT
TCAAACCATTTATATACAAAAGTTTTTATGTACGTGCACTTACGATGTTT
GTACTTCGACATTGTTGTCAACATGCAATTAGCCTACGGACATGAATTTG
CGATAAACTTATATATGATATATGATATTGTTATAGCTCTATATGCTGTC
CATGTCAAAATTCCATCGTGAAGTATATGTTATATCATGTCTTGTACATA
TCATGACCTATTACAAGCGTTTTCTTGCAGAAATGCACGCGGGATGAAGA
CTGTAAAAGAGGCAAGGTTTGTATTCAGCCCGACCAGATCATCTGGGACT
TATTCGATCCGCAATTGGGCCCTACATTTTGCCTGCGGCTGTGCCCTCCG
CGATATTTCTACTTCCCGTGGACCGGGAAGTGTCATAAGTATGGGGACCC
GCTGCCGTGGCCTCGCCCAGGGCATGAGGGGTATACCTGCCAAGCTGCTG
CCGACTGCAAGTATGACCAGTGCTGTGGGTATCACGAAGGTGAGTTCGAT
AAGGTGTCAGCAGAGTCTGCTCGTCTGACTGATAACGTTATAGATATATA
CATAATATATATGAATATATACATGCACACACACACACACACACACACAC
ACATAAACACACATAAACACACACACACACATACACACACACACACACAT
GTATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATATAGTGAGAGAGAGAGATAGAGACAGAGATAGAGAGAGACAGAGACAC
AGAGATAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTTCTAGGACGCG
GATTAGAACCTGCTGAGGAGAGTGTTGACATGTATATTGAAACACTCTCC
AGTAGCTAAGGTCTGGGCTGTCTGGGAAGCCACAAAAAGAAGAGCAAGAG
GCGTACAACTATCCTGAGAACTTATGCGGGTATTATATCAAATCTACAGT
GTAGCAAGTCTTGTTTGTTCTCATCGTTTGTTCTTCAGACCTTCAGTTCT
CCCGTTTCTGCAAGCCGTTCGCAAAGGAGGGTGAACCGTGTGTACATCGC
GTGACCACCACCATGACGTCCTGGCCCTCGATGTTTTTCGAAAGAAGAGT
TCGAAAGAAGAGACAGCTGCAGGATGGCGACTGCTGCGAACCCGGACTTC
ACTGCAGCAAAGAGGGGTAAGGGCAGAATAAACATTTATCACTTTTTCAT
TTTGTGGAAGATAAAAAGTTTCAGTAGACATGCAGCATTGATGGAATATA
GAAACTATAGAGATTGCAATTAAGAAATGATCAGAAGTTAGAACGGCTTT
CATGTAATTATTGGATGTCTATCTAATAGGATAGATTAGATGGAAGCAAG
AAGATAAAACTGGCGAAACAACATGGCGGCGCCCTTTAGACTCGACCGTA
AAACCGACTTTTGCATTCGCAAACCTGTTAAGTGTGATTTTCTTTAAGTC
TTCTCTCTATCTCCGGCACTAGTGTCTGCATCGCAGACGAAGACAGGGCC
CACGACACCGAAGAGGCCGAAGAGATTTCGAAGCCACCCGAAGAGGATGA
AAAGACCGACGACAACCCGGAAAAGACCGACGATATGTCGGAAGAGATCC
CGAACATTCCAGACGCCACCGAAGCCAAACCCGATGAGAAAGATGACGAC
ATAGAGAACCTAGACTCAACACAAATCGAAGAGCTGGACGCTGAGGATCA
CCCCCTGAAGTGAAGGGCCTGGTGAAAGAGACGAGGGTCCCGCTGTAAAG
CAGTCTCTTACACTAGATTGGGCCACCCTGGCTAAATAAAACAGACAGAA
AGAAAGACGAATTGGCTGATGTGATTACACAATTAATAGTTCAAAACCAT
AGCCCAAAGGCTTCATGCCAGAGTACTGTACGGTACCTACTAAAATTATC
TCCAATGTTAGAATTGTAAAGAAAGCCTGACGTTTTAGCCTTTTCGTGAC
GATTAGACCTAAGGCACACAACCCACCAAGAGCTACATGTATATTCAATA
TCGTGGCATTTGGCAATAAACCAATGACGCAATACAATGAAATTCACCTA
CAGACTACAAAATAGAAATAAAGCTTAAAATGCTAATTGTTAAGTATTGT
TATATCGGACGGTGCTAATCGTAGTTTTCAGCATCTTTTCTAATAGCTAA
CCAGTCTTTTACGTATTTGCCTATTTCGGCATTGTGAGAGTTGGCACATA
AATATTCAAATCTGCTCGTGGTACCGAGTCTCTTGAAATCTGTTGTACTT
ATAAGTATGCAAAGATATGTGAATTAC

Coding sequence (CDS) from alignment at Sc0000003:3486413..3491739+

>Blg00882.0 ID=Blg00882.0|Name=Blg00882.0|organism=Branchiostoma lanceolatum|type=CDS|length=855bp|location=Sequence derived from alignment at Sc0000003:3486413..3491739+ (Branchiostoma lanceolatum)
ATGAGGATCGTTGTAGCTTTTGTATCGGCCGTGTTGTTGGCACTACAGCT
GGCACCGACCTCTGCGTTAGTCATCCGCCCTCGCCGTGAACTCCCGGACT
TCTTCAGCCAGATCCTCCAACGGGTCAAGAAAGATGCCGTGGTGGACGAT
AGCAGCAATACTGGGGAAGAGCTTAAGAAATGCACGCGGGATGAAGACTG
TAAAAGAGGCAAGGTTTGTATTCAGCCCGACCAGATCATCTGGGACTTAT
TCGATCCGCAATTGGGCCCTACATTTTGCCTGCGGCTGTGCCCTCCGCGA
TATTTCTACTTCCCGTGGACCGGGAAGTGTCATAAGTATGGGGACCCGCT
GCCGTGGCCTCGCCCAGGGCATGAGGGGTATACCTGCCAAGCTGCTGCCG
ACTGCAAGTATGACCAGTGCTGTGGGTATCACGAAGACCTTCAGTTCTCC
CGTTTCTGCAAGCCGTTCGCAAAGGAGGGTGAACCGTGTGTACATCGCGT
GACCACCACCATGACGTCCTGGCCCTCGATGTTTTTCGAAAGAAGAGTTC
GAAAGAAGAGACAGCTGCAGGATGGCGACTGCTGCGAACCCGGACTTCAC
TGCAGCAAAGAGGGTGTCTGCATCGCAGACGAAGACAGGGCCCACGACAC
CGAAGAGGCCGAAGAGATTTCGAAGCCACCCGAAGAGGATGAAAAGACCG
ACGACAACCCGGAAAAGACCGACGATATGTCGGAAGAGATCCCGAACATT
CCAGACGCCACCGAAGCCAAACCCGATGAGAAAGATGACGACATAGAGAA
CCTAGACTCAACACAAATCGAAGAGCTGGACGCTGAGGATCACCCCCTGA
AGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00882.0Blg00882.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00882.0-exon-Sc0000003-1570713199:3486413..3486749Blg00882.0-exon-Sc0000003-1570713199:3486413..3486749Branchiostoma lanceolatumexon
Blg00882.0-exon-Sc0000003-1570713199:3486993..3487251Blg00882.0-exon-Sc0000003-1570713199:3486993..3487251Branchiostoma lanceolatumexon
Blg00882.0-exon-Sc0000003-1570713199:3490451..3490628Blg00882.0-exon-Sc0000003-1570713199:3490451..3490628Branchiostoma lanceolatumexon
Blg00882.0-exon-Sc0000003-1570713199:3490935..3491739Blg00882.0-exon-Sc0000003-1570713199:3490935..3491739Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:3486413..3491739 +
Properties
Property NameValue
GeneIDBlg00882