Blg00717.0 (mRNA) - B. lanceolatum

Overview


Name	Blg00717.0
Unique Name	Blg00717.0
Type	mRNA
Organism	Branchiostoma lanceolatum (Amphioxus)

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Sequence

The following sequences are available for this feature:

mRNA from alignment at Sc0000003:7257265..7266894-
coding sequence from alignment at Sc0000003:7257265..7266894-

mRNA from alignment at Sc0000003:7257265..7266894-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Blg00717.0 ID=Blg00717.0|Name=Blg00717.0|organism=Branchiostoma lanceolatum|type=mRNA|length=9630bp|location=Sequence derived from alignment at Sc0000003:7257265..7266894- (Branchiostoma lanceolatum)
GCTGTACCATTTGAACAATCAAGGCTGCGTCCTCTTCAATTTATCAGTTC
GAGACGAAGAGAAGTCGAGACCAGTCAAGACCAGTCGAGACCAAGTAACT
TCATCAAACGTCTATCTACATCGTGGTGAGTGCCATTTATTTCTTTTGAG
CATTTCTATAATATCAGTCTGGGTCTGTTGAATGGGAACTGGTTCGTAGG
GACGAGGTTTAAGCGAAAAAGGCAGGGCGGATGGGGTCCTAGTTAAGGCA
TGGTGGTGCTGACTGGGTCTGAGGCGGGACAGGGTAGTGCGGGCGGGCTG
TAAACGGGACTGGGCAGTGCGGACGGATTTGGAGCGGAACAGGGCAGTGC
ATGCGGGGTTTGAATGCGTTCAGGGCAGTCCGGACGGAGTGTGGGCGGGG
ACAGGACCCCGTGGTCAGGGCCTGAGCGGGGACTAGATTGTGTGGTCATG
GTGGACCGAAATTGGGCGTAAACGGCCGTGCGGATTGTTCGGAAGGGAAA
TAGGGCATTGCGAACGGGTTCGAAGCGGAGATAGGACCGTATTGACTGGA
TCGGAACGGGGATAGAAACGTATGGACGGGATCAGAGCGGGAATTGGGCA
TTGCGGACGGATTCGGAGGGGGTAGGACCGTATGGACGAAATCGAAGTGG
GAATAGGGCATTGCTAACGGGATAGGAGCGGGGTAGGGCAGTGCAGACGG
AATCGGAGCGGGGATAGGGCAGTACGGACGGAATCGGAGCGGGGATAGGG
CAGTGCAGACGGAATCGGATCGGGGATAGGGCAGTGCAGACGGAATCGGA
GCGGGGATAGGGCAGTGCAGACGGAATCGGAGCGGGGATAGGGTAGTGCA
GACGGAATCGGAGCGGGGATAGGGTAGTGCAGACGGAATCGGAGCGGGGA
TAGGGTAGTGCAGACGGAATCGGAGCGGGGATAGGGTAGTGCAGACGGAA
TCGGAGCGGGGATATCTTAGCATAGGCTGGGCCACGTAGGCACATTCTCA
GCAGGACAAGAACATGTCTGCCGAATCGGAGCGTGTGGAGGGCAGTAAAG
ACGGGGTCATAGGGCAGTGAGGACGGCATCGGAATGGGGACAGGGTATTA
CGAAGCGGATAGGAACGGGAATAGGGAATTTAGGACGGATTCGGAGCCGG
AATAGAGCACTGCGGGCAAGTAAAGTCTTGCGTCACCACCGGTATGGACC
ATAAATGGAAATTCTCACGGAGATTGAGGTCAAACGATGATGTCATATCT
AGTCCTTCAACAACAGCTCACTTGAAGCGCACGTTTTGTGAAATGTGAAT
ATTTTCCTGGGGAAAATGGCAGGATCAAAGAGTAAGGCAGTACGGACGGG
ATCATAGCGGGGAGGGGAAAAGACAGGGCAGTACGGACGGGGTCTAGACG
GGATAAGACCGTGCAGATGGGATCGGGGCAGGCATAGGGCATTGCGGGCG
GGATCGGAGCGGAGATAAGGCCATATGGACGGGTTTGAAGCGGGAATAGC
GCATTTTGGCATTGCTGAAGGGATCGGGGCAGGTATATGCCATTTCGGAC
GGGATCGGGGCGGGTTTCGGGCATTTCCGACGGGATAGGGGCGGGTTTCG
GGCATTTCCGACGGGATAGGGGCGGGTTTCGGGCATTTCCGACGGGATAG
GGGCGGGTTTCGGGCATTGCTGAAGGGATCGGGGCGGGTATAGGTCATTT
CGGACGGAATCGGGGCGGGTATAGGGCATTTCGGACGGGATCGGGTCGGG
TATAGGCCATTTCGGACGGAATCGGGGCGGGTATAGGCCATTTCGGACGG
AATCGGGGCGGGTATAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CATTGCGGACGGGATCGGAGCGGATATAGGGCATTTCGGACGGGATCGGG
GCGGGTATAATTCATTGCGGACGGGATCGGAGCGGATATAGGGCATTTCG
GACGGGATCGGGGCGGGTATAATTCATTGCGGACGGGATCGGAGCGGATA
TAGGGCATTTCGGACGGGATCGGGGCGGGTATAATTCATTGCGGACGGGA
TCGGAGCGGATATAGGGCATTTCGGACGGGATCGGGGCGGGTATAGGGCA
TTGCGGACGGGATCGGGGCGGGTATAGGGCATTGCGGATGGGATTTTTAG
CGGGGATAGGACAGTACGGGTGGGGTCTGAGCGGGGACAGGCCCTTGCTT
ACTGGGCCTGTGCAGTGACAGGGCAGTATAGACCGGGTCTTAGTGGGCAC
ATGGCAGTTCAGACGGGGTCTGAGTTCGGATGGTTGGGGACTAAGCAGGA
TTAGAGCTTGTTTTGCCCATTTCTTTGATGAAAAAGAAAACTTACAATAG
AGTAATAGCATAATAGACTTTGAATTCAGTTTCTTTTCTGACCCAAAACA
TATTCCTTTTTTTGCGGGTTTGCAGATTTATTTGAGTCATCATGGCGATT
CGTCACATCATGGCCATTTCTGTCGTGCTTCTTGCCGGCTTCGTTCATGA
AGGTGAGTTGTCGTTATGAAATTTTAATAATGAAACTATTCCTTAAAAGC
AAACGACTACCTGCTTTGATGTAGGCAAAGGCATGTTTGTCTTTACACGT
TATGTACGCTTTCGTTGAGACATGGCAATTCTTTTAAATATTGGCTACTT
GCATCTGAGTCAGGTTTAGCGTTAAACTGCTCAAATATTGATGGTTTCAA
ATTTTGTGAAGGAATGTAACTGTAACACACTTAGTCAACTCAACTAATTA
TCAAAAGAAATAAAGCAGAAAGAATAAATAATTGTTTGGTTTTAGTATAT
TGTCTTGTTTGTAAGGTTAAGTCTTTTAAGCACATATGGTATCATGTTTA
GTAACGCTGTTTGCCTAATTGTGCTTTGATTTTGCTATTTTAGGACAGGC
GTGGGGTTTTCTGAAAAATATTGTGAATATTGATCGTTTCTTTGACGTAA
GTGACCTGTGCTTTGAGTTTTCAACTAATTTACTTAATATGCTTTTATTT
TGTTATCTTAATTTGTTAAGTCTGTTAACACTTTCCATAGTAGTTGACTT
ATGATTATGTGACAGAGAACAGACAAGAAATGTAACTATTGCTGTTAATA
TAATTTGCAAGTAAAATATAGCAGCTCCAGATTGGAAATAAGTTCCAATT
TCTATTTTGATACAGGCAATGTAAGTTATTAATCAAAATATCAGACATCC
ATTCATATTTTGAAATTCAAGAAATCAAAAAAAGAACTGTTGTTTTGCAA
TTGATTCCATAATCTATATATATCAACTCTGCTCTGAAGGCTTTTCTTTA
ATTCCCTTTAAGCATAAACCTGAGATTCGAAACTGAATAAGTCATGTATG
TCTGAATGCTGCATTTTTTTTTATTTTCTCATTTACATTAGAGCGGCGTG
AAATCGTTGGACAATCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGAT
CGCCCAAGACTTCAAGACCGACCTGCGCTTCCAGAGCTCGGCGGTCATGG
CTCTGCAGGAAGCAAGTGAGGCCTACCTGGTCGGTCTCTTCGAGGACACC
AACCTGTGCGCCATTCACGCCAAGCGCACCGACATCACGGACCAGGACAT
GCGGCTGGCCCTCCTTATGCGTGGTGAACGTGTCCCTGTAGAGGTAACCC
CGGCTTTTTACGGCCACTTGATCAGTAACATTATATTATGCTTTAAACTC
TGAAACATCACAGACATTACTGTTTTTTTTTCTTTTTAAATCAAAGATGT
TATATTCCAGTTTATTATATTATTGAGGAAATTACTGAGCACAATATGGC
ATATTGTGCAATATCATGTTATTTGGTAAATATGAATTTGGGCAGGACGC
GGCGGTTGATACATTTTGGTTTGGCCCAGTGGGGTTACTCACTTCAACAC
ACAGGGGTCAAGTGTAACCTAACATTATTCTTCAAACAACCGTTTAGCTT
CGAGAAATTCTTTGTGCTCGAGGCGGTTGCTTACTTGAGCGTGTTCGGCG
TTTTTTTCTCTCGCTCATCAGGATTATACAAGTTTCTCCAAGTGTTTTTG
TTTGTTATGGATGTCACCTTGTGATCATGAAAGATACAGATAATCATTGT
ATACTGACGTAATCTTATGTGCAAAATCTTCATTTTTGTCTAAGATGGAT
TTTATGCGCTTACATTGTAACCATTTTTCGACAATTTGTACAGGGCAAGA
GCCTCAAGGATGAAACTGACGTTGAACTTATGGTATGTTTGAATTTCGTG
TACGGAAAAAAACTAGAGATATATTCCTAACTGTATAAAGTAGGTCATTG
CTGAAGGTAACATTAGAATCGTATTATTTTCATGCAAGTAATTTTGGATT
TCATCTGATGGCGAATTATAAGAAAGTTATTGAATATAAGTCATTTCTAG
ATGCCATATGATTGCAAAACAATGCTTCTGATTATATGAGAGGGTCAGTC
AGACCCTAATTTTTCTCTTTTAAGTGTGATACTTTCATAGAATACATGTA
GTGTTTAGAGTTTATTACTGTCTATTTACTAAAGTATAAGATTTCAGCCA
TTTGTTTCTTGTTTTTATCTCTTGTTCTTATTCTATTCTGTCATGTTTAC
CCAGGGTCGCCCTGCTCAGTGATTTACACTGCTTTTGTATCATTGTTTGT
ATTATTGTTTGAATAATAGAATTTCACAGAGGACAATGCTTTTCAGGAAA
CTAATTTTCGTTTTTGTGTGTTTTGCCTCAAGCTTGCAGTCAACCGTCTA
GCCCGCCAAGGCGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC
CCGTGGCGTCCTTAAGGTCTTCCTGGAGAACGTCGTCCGTGATGCCGTCA
CCTACACCGAGCACGGCAAGCGCAAGACCGTCACCGCCTTGGACGTTGTC
TACGCTCTCAAACGCCAAGGCCGCACCTAA

Coding sequence (CDS) from alignment at Sc0000003:7257265..7266894-

>Blg00717.0 ID=Blg00717.0|Name=Blg00717.0|organism=Branchiostoma lanceolatum|type=CDS|length=603bp|location=Sequence derived from alignment at Sc0000003:7257265..7266894- (Branchiostoma lanceolatum)
ATGGCGATTCGTCACATCATGGCCATTTCTGTCGTGCTTCTTGCCGGCTT
CGTTCATGAAGGACAGGCGTGGGGTTTTCTGAAAAATATTGTGAATATTG
ATCGTTTCTTTGACAGCGGCGTGAAATCGTTGGACAATCGCAAGCTGCCC
TTCCAGCGCCTGGTGCGGGAGATCGCCCAAGACTTCAAGACCGACCTGCG
CTTCCAGAGCTCGGCGGTCATGGCTCTGCAGGAAGCAAGTGAGGCCTACC
TGGTCGGTCTCTTCGAGGACACCAACCTGTGCGCCATTCACGCCAAGCGC
ACCGACATCACGGACCAGGACATGCGGCTGGCCCTCCTTATGCGTGGTGA
ACGTGTCCCTGTAGAGGGCAAGAGCCTCAAGGATGAAACTGACGTTGAAC
TTATGCTTGCAGTCAACCGTCTAGCCCGCCAAGGCGGCGTCAAGCGTATC
TCCGGCCTCATCTACGAGGAGACCCGTGGCGTCCTTAAGGTCTTCCTGGA
GAACGTCGTCCGTGATGCCGTCACCTACACCGAGCACGGCAAGCGCAAGA
CCGTCACCGCCTTGGACGTTGTCTACGCTCTCAAACGCCAAGGCCGCACC
TAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Blg00717.0	Blg00717.0-protein	Branchiostoma lanceolatum	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Blg00717.0-exon-Sc0000003-1570713199:7266770..7266894	Blg00717.0-exon-Sc0000003-1570713199:7266770..7266894	Branchiostoma lanceolatum	exon
Blg00717.0-exon-Sc0000003-1570713199:7259693..7259769	Blg00717.0-exon-Sc0000003-1570713199:7259693..7259769	Branchiostoma lanceolatum	exon
Blg00717.0-exon-Sc0000003-1570713199:7259249..7259301	Blg00717.0-exon-Sc0000003-1570713199:7259249..7259301	Branchiostoma lanceolatum	exon
Blg00717.0-exon-Sc0000003-1570713199:7258552..7258803	Blg00717.0-exon-Sc0000003-1570713199:7258552..7258803	Branchiostoma lanceolatum	exon
Blg00717.0-exon-Sc0000003-1570713199:7257963..7258001	Blg00717.0-exon-Sc0000003-1570713199:7257963..7258001	Branchiostoma lanceolatum	exon
Blg00717.0-exon-Sc0000003-1570713199:7257265..7257462	Blg00717.0-exon-Sc0000003-1570713199:7257265..7257462	Branchiostoma lanceolatum	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Sc0000003	genome	Sc0000003:7257265..7266894 -

Properties


Property Name	Value
GeneID	Blg00717

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Blg00717.0 (mRNA) - B. lanceolatum