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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000042:486191..493912+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Blg00559.0 ID=Blg00559.0|Name=Blg00559.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7722bp|location=Sequence derived from alignment at Sc0000042:486191..493912+ (Branchiostoma lanceolatum)
AGGTGACATATGATGGGGTCAGTGGAGGGAGACGATGTTTATAGTAAATT
ATACAGACGGAGACGCTCACTGATAACACTCCGCAACAGTCACCAGAAGT
GCACACACAGCGGGGTGAGCCGGACAGGATTTCTAGTCTCCCGTATTCTG
GCTAAATAAAAGTCGGTGTATCGTGCGAAGATGGCGAAAACCTTTGTCGT
ACTCTTGACCATGCTTGCGGCGGTTCTGTTTTCGAGCGCAGTGGCAGCGG
CAACGTTGGGCGAAGAACTCGCCGACTTGGACAACTTCATACAAACCCTC
GTGGCCTGTAGGTCCGACTCTGTCCCAGGCTTAACCATCTCCGTCGTCAA
GAACGGGGAGGTCGTTTTCGCCGAGGGGTACGGCAGACGGGACTCGAACC
AGCGGCTCCCGGTGAACAACGATACTCTTTTCGGTGTAGCGTCCGTTACC
AAATCCTTCACGGTCGCCCTTCTGGCCGACCTCCTCGCGGAGAAGGGTGA
CGTCACATGGGACACACCTTTGGTCGACATCTTGGGAGAAGGCTTCCGAT
TTCAAGACGAGTTCCGCACGAAGGAAGCGACTCTTCGCGACCTTCTTGCT
CACACGATGGGACTGCAGAAGTTTCCAACTGGCGTCCGTCAGTTCGGGAC
GGCCGTCGACAGGGCGGAAGCGGCAAGGTACCTCTAACGACTGTCAAGCA
CGTCTAGTACATGCGCCACACCGGAAAATATGTAGTAAAGCATCATTTCA
CGTATTACGAACGATGCTATTAGATAGTCCCAAATCTTAACATTGTACCG
CTGTAACATACAACATTACTTACCGGTAGCAAGGAGTTCATTTCATGTCT
CGATAAGGCCATGTTGATTTGATTATATGGATCACATCCACGCGTGCATC
AATTTTCGGCCGTTTTAAAAAAAAAGAAGTTTTCTACCATACTGTAAATC
GTGCAAAGCAGCTATAAAATGAGCAAATGTCAATTGCAAAATGATAATTC
GGAAAACGGATCCAAATGTCTGGATTGTGTGGCCTTACAGCAGGATTTTC
GACTCAGAACCCAGCGGTCCCGGGTTCGAATCCCCTGACGCCACCGATCT
TGTGCCTGGCCTTGGGAAAAAGGCACTTTACACGACTTTCCTCACTCCAG
CCAAGTGTAAAAAACGGCCATATTTTTTTGTGTGTGTGTCACGACATCAG
CAATAGCTGCCTGTGTCCCACGTGTACTGCACTGTTGCAATTCCAATAAA
ATCCAAAATCCAAAACGTCTGGAATGCCTAACTAAAAGAAGAAGACGTGA
AAGACCAAAAATGAAGAATCCGTTATTTGGTATACCATTCTCTGTGTGTT
TAGTCATTTCTTCAACCTTCTTGGCCACGTAAAGTTTGTAATGAAGACTT
TTTTGAAAACTCCCTTTTAGATTCGCACGCTCGCATCAGTTTTGGGGTTC
ACAGAGGATGTCATCCATATAATCAAATCAACATGGAATATATCAAAATA
AAAGTTATTGATATATAAATCAGACAATGACGGGCCTCACCCAAAATGGT
TAGCCTCCGATGCAGACTCCTCCCGGCTGTTTTCTTTTTCAATTTATAGT
TTTTATACTATTATATATTTTTTTCTTATTCCCGGCCAGCAATAAGAAAA
AAATATAATAATATAAAACTTGAAAAAGAAAACAGCCGGGAGGAGTCTGC
ATCGGAGGCTACAAAATGGTTCACGTGCAGGAAAAAAGATGAGAATTATC
AAAATTTTGGAGGACCTTATAAGAAGGCTTCATGTTTATAGTTACATCTT
CTGGATGAGGTCCAACACTTTCTGATCTACAACAGTAAACAGGCCACNGG
TCCAACACTTTCTGATCTACAACAGTAAACAGTGCACGTGCAAGAGTGCG
CCGGTGTTTATCACAAGTGTCAGGATCTGGGCTGCCACGTTGGTTGGAGT
GGCAGAGGCGGGCGGCACACGACATAAGGCAAGCCGATCGAGATAACTTA
AAGCTGCGTATGGTCAACAAACAGCCAGCAATATAACAATCGTAGTCTCC
ATCCAAATCCTCTGGGTGCTAAATAAAGGTAGACCCCCCCAGAAAAAAAC
AGGATTAAACAAAGGCATAGGCGGATACATACGTCTTCCGCAACCAATAC
AGACAAAGAGAAGTGTGTGGGGATGATGGATTCCTATAAATAAAGGTAGA
CATTTGGTTGGGAAGGACTAATGTTTTGCCCCCCCCCCCCAAAGCAGGAT
TATAAAACGCACAGGNCCCCCCCTCCCAAAAAAAGCAGGATTATAAAACG
CACAGGCGGCCTCATACGTCTTCTGCAACCAATACAGAAAAAAAGATGAG
TGTGTGGAAGTGACGAATTTTTATGATGGGGAGGCACCAAGTGTTTCGAC
AAGCCCTTCTCTCATTTCAGTGAAGATATTTGCGTGAATGTCGCAAACAT
TCAAGAATCATCTACAACGACCTACTGTTGTTTCCTGTCACTTTTTAAAA
GCGCTTTCACTTGATTTTGATAACGATAACGATGACACGAAGGGAACCCT
ATTGTTTGTTTATACTCACGTCAGTGATAATGCCTTGACACAAAACAGAT
AGTAAGGCGTTACTATTTAGGCTCACCGGTAAATCGGTCAGTCTTCAGCT
ATCTGACACAATTGCTCCGGACACGTGACTGTATGCAAGTGTGACGTCAG
CAACGGGTCAAAGGTTATTGGAAGTCGATATCGTCCCTCGGCTGCTTTGG
ATAGCGTTAAATTATCGATCCCGAACACGATTACTTTTTGGAGAAGAATA
AAGGAGGCCATCTACTTCAGGGCATACCGGCAGCCTTATCTTGACCGGGA
CGGGGGTCGCCACCGACTTCCAACAACCCTTGACCCATTGCCGATGCCAC
ACGTGCATTAAGTCTCGTGTCCAGAGCAACTGAAGAAGAGCTGAGCGATT
CGGTTCCTGTGAGTCCGTTGTTCTAGTTTGATTTCTCAGCGAATGCACAT
CTTTCTTGCCTCCACGCCAGGAGAATCAGGTACTACTCCGAGGTCCGCCC
TTTCCGGACTGCGTTCTACTACAGCAACAATCTGTACACACTGGCCGGGC
ACGTCGCCGAAAGGCTTGCCGGGAAGCCGTACGAGCAGCTGTTACGGGAA
AGGATCTTCCTCCCCCTGGGGATGAGCGGCACCACGTTCCTGTCAGAGGC
GCTTGAGGAGGACAACTTTTCAAACTTCGCGGAGAGCTACGGGGTGTACA
GCAAGGACGGGCGCTCTCTGCCCGTAAACCGGGAAATATACAGGTAGGAT
GGCCTCTTTCCTTAAAGGCGGCAAACGATTGGCGACCTTAGAGCGACCAA
TTTCAAACAAACCATTTTCAAAATCATAAGTCAAAGTCCAATTTTAGTCA
CTGCCTTGCCGTATGGATGTCATTCCGGAGAGGGCGGGGACTGTGTGTCC
CAAGGGCCAAGGAACGGAGATGGGCGCCGCCGTATACACCATATAGTGTG
GGAAGGTCCTCAAATTCCACTTGTTGTTCGCTCAAACAAAGGGAACAGGG
AAGGTGCTGTGGCTTTAACCTGTTGTTCGCCCGACCTGACAGGCTGATGA
AGTTGTCCGCCCCCGCCGGCGGCGTGGTGTCTAACGCGGGGGACATGGCG
CGGTACATGCAGTACCACCTGCGCCCGGCAGGGGCGGGACCCGACGGCGA
GCCCAACGGTACGTAACGAGCTTGTGAAAGTCCTCCGTAACATATTTGGG
GCTTTTGTTTTTTATTTATTTATTTATTTATTTTGATTTACCACATTTTG
TGGAAGGATTGACATAACAGGTGAACTATCACCTTTTCAAGATGTCATCC
CAGACCGGACTGTAAGATTTGGACCATCGCACACCGGGGCATGCCCCTAC
TCTTTTTCGAAAGGTGTGGTGGGTTCTTTAACGTGCGCGGGGTGTTGCTC
TCCCCAAACACGGGACCTCCATTTAACGTCCTATCCGAGGGACGTCCCTA
ACCCTAGATGAGCTAGGTACTCATTTACACCTGAGTGAAGTGAGGAAAGT
CGTGTTAAGTGCCTTTCCCAAGGGCACAACGTCGGGGCGCAAGTTCGGAC
ATGTCTCTGGGCATAACCTGGGATTAGATCCCGGGACCCATTGTTTGACA
GCCGCGTGCTCTACAGTTGCGCCACACGACGCCACAATTTGTTTGTGATT
TGTTAGTTTTGTTCATCCTTCCTGACCATGTAGATTTCATACTGAAGGCA
ACTGTTGATTTTGCCAAACTTTTTTTATACGCACGCTCGCATCAGTTTTG
GTTTGGGGTCCCCATAGGATGTCATCCATATAATCAAATCAACATGGCCT
AACGAGATTGTGATGGTCTCACACCTCCGTAAAATATTTGGAGCTTTTGT
GGTTTATTGGATCCCGCAAAAATACCTGCCCCTACAGTTTCCAAACAAGC
TGCTAGGGGGACAAAACCTATGCCTCGTTGATCAGTCAAAGATTTGGGTA
ATTCTATTTTGTGTGGGTTTGTAATCATAATTCAACTTTGACCCAAAGAG
TCCGTCTCCTGATTCCCCCAGACCTGCTCCGAGAGGCGCACACGGTCCAG
TTCCTGTCCAACCCCGAGGGTGAAGAAAAGGGCAGGGAGATCTTCCAGCC
CCAGTTTCCGGTGGGAGTCATGGACAAGGGAGAAGGCCTGGGGCTAATAG
TCGGCAACTACAGAGGTATCTGTATCTGTATTTTGTTTTATTTGAACAAT
ACATATAAATTGCCAGCATGTATAGGGCGTATTCACGTGACGTCATCACC
CCTGCCCTCCGTGGGCGGCCATGTTGGTGTTCACCCTGCAGCGAAGTTTC
TCGGTGTCCGACGGTCTCTAAATTTCCAATGAATGCGAAGTCGTCTGATC
GCTGTTTTATCATATACAAAGAGTCTCCAGTCTCACATCCTTTTCGCTAC
AAAAATCCAATTTCACCTACTGGAAATGACCCATTATCGACGAGCGAGGA
AAGGTTTTCCCGCCCAGCAGCCTACAAAGGGCGGCCTACAAACATGGCCG
CTAAACTGTTAACAGAGTATGCATAAAATCAGTTCACAGCATGCAAGTGT
TCCAAGGCCTGCAACCACGTAGTACAATGTCTTGAGTGTCGTGAAAATTG
TCGTGAAAAGTGACATTTTGTTGACAGGGAGTATGTTATGATCGGGAAAG
TTCGACGTTGAAAGACCCCCACTAAGTTTACGAACGTATCTCAAGCAACG
ACTACACGGTGCCGCGACTGTGTTACACAACGGGCCTGTAATTTGCTTTT
CGACCAGATACAAAAGGTTTCCATACACACACGTTGATTCTCAACCTTCA
ACTATTTAGATCCGCTGCTCGTATGTCAGAAATCCACTTTTGTTTCAGTC
GTTAGTCCCTTCGTATGTTCCCGCACCAAGCCCGCACCTACACTAGAAAC
GTAAAACCAATCTTACTGTAACTCGATCAGTGTTTGCTTTATCAGTCCCA
ATCCAACATCTGACCACGAGGCAAAACACCATGAGTATGAGACAAAACGT
TTTGAAGGGAAATTGTGAAGGGCGTAGAAAACATCTGCCATTTATACGGA
GAGTTCCATAGGGCTCCACTATCAAGTGAGCACCAACATGGCCGACAGTG
CTCGTTGCTAGGGGGCGGGTCACGTGACTGAATACGCCCTATACGGTTCC
GTTTCCAATCCGGGGCCCGGCCGGGCTGTTTGCGAAAACGACAAGCTGTC
CAACCGGGCCCCAGATTGGAAATGGGACCGTAACATAAAAAGGTTTTATT
TTCGGTGTGTCTACCGGTGTTTTTGTGTGTTCTTAATTATTCCATTGAAG
CAGATCTCATCCCCCTGCAGGGTACAGGCGGTTGTATCATGGCGGTAGAC
TGTTTGGCTTTACGTCACTGATGACGCTGTTTCCTGACCAATCAGGGGGC
GTGTTCAGCAGTGTGAACGGCCCCGTGTTCCGCCGGGACAGAGACGTGCA
CAGAGTCCTGCACTATCGGGTGGCCGACATGCTGCTCGGTACGGTTTGGT
TTATTTCATCTCAACGTTTACGGACAAAAAGAAAACTACTCTCCTCTTAA
CATCACAATATCTACACATTGCAGAAAAAGTGGGATCATTAATCTTCCAC
TGTCTCGGAAAAAGAAGTCGAACCCAATAAGTTAGTATTTAGTGTCAGTA
GTTAACTAGAGTTGTAGAATACTATACTGTTCACTGTCTGTCCGTTCTTT
TCATGTTAAATGTATTTGCAATTAGCTTACGGGAAGGAAATTGCAATAAA
GTGTTAATCATCGCAGAACACAGTATCTATCCGCGATCCCCGTAGTCATT
AGTGAAGTAGTTCGGGTACAAGTAGTGCGTCACAGTAGTTAAGAGGCCGT
CAAGATTCGTCCGCGCACGTCAGCAAGGCGGAAACTATGGTGAGTGGTAG
CGGAATACGTCAGATTTGAGACTGTATGAGTTTTATTATGATGTTTGTTT
CTTCGGCCTAAATTTTTGCCTGAATACTGTTACTGCCTACTGCTACATAG
AGGGCCGAAAGGCCCACCCAAAAAGCTTGATAAGGAGGCTACATTCTCCC
TTCCGTCTCCGTTCTGCTATCATGCCGCTAACACCTCGTAATGTGTGCCT
TTTCAGGTCTGGACCCGTGGCTGAACACCACCACCGCCTGTAGCTACCCC
CAACCCTGGGACACACGCCCTGCCGACCCCCTCCCCGCGCCTCCCGCAAC
CTCTCGCGACTTCCCGCGAGACAAACGAGACTACGTGGGTTCCTATGGCA
ACCAAGTCTTTGGCAACCTCACCATCTTCCTCAACTCAGCGGACGGCACC
TTAAGATTTAGAGCGGGCCTGCTTGGTCGCGGGGTAGTTCTTCCGCTGAA
CGCCACGAACAGCGTTCTCCTCAAAGGTCCCCCAGACATGTTCGCACCGG
TTCAAGCCTTCTTTGAGGAAGAAGGAGGGGCGATCCACCGCCTTGTGGTG
TCGGGAGTTCCTCCCGAGCCGGCCGTGGTGTATGAACGAGGCTTGAAGCT
TACGGATGGGGACGGGACACATCGGGAGGGAGGAGGTACACCGGGTTCTG
CCTCTGGCACTGAAACTACGGTGTACCGAGCGCGGTCCTACTGTCCACTG
TTAGCGGTCTTTCTTCTTGCGTTTGCCTTTAATTGATGATATTAACTCTG
TTTTACAAGCAGTGCAATATTATCATTAATCCAATCTACATCTGTCTGCC
AGCCTTCCGTATGAAATGTCTGGACCTGATGTAACAGTATCCCGAAAATT
GTCCACTGTTTGATAACATTAGCCTGGCATTGTGCCTGTAATACGTGCAC
GTTTTGCCGTATGTTTTTATTCATTTATTTATTATCATTTTTATTTTATT
TAAAGAAACATCAAAGATACAAAGAAAAGGACGAAGACAAAGTGACGGCG
AACTCAAGTTGTACACAACTTATATTCTCGCCGCCACTTGTACATTGTAG
AAAATAGAATATTTAACAAGACAAGACAAGACAAAACACCAAAACCTTTA
TTTATTTCTGTTTTATTTTACCATGGTACCTCCCTCAGTGGATGAGCACT
TCTTTTCAGGGGGCCCTGGGTACACTATGAATATCATTAAGTTGCATTTG
ATACATGTACTCAGTGATGGAACGTTCACACTTTAAAACAAGTACCTCAT
TAAAACACAAAGTTACACTTTG Coding sequence (CDS) from alignment at Sc0000042:486191..493912+ >Blg00559.0 ID=Blg00559.0|Name=Blg00559.0|organism=Branchiostoma lanceolatum|type=CDS|length=1653bp|location=Sequence derived from alignment at Sc0000042:486191..493912+ (Branchiostoma lanceolatum)
ATGGCGAAAACCTTTGTCGTACTCTTGACCATGCTTGCGGCGGTTCTGTT
TTCGAGCGCAGTGGCAGCGGCAACGTTGGGCGAAGAACTCGCCGACTTGG
ACAACTTCATACAAACCCTCGTGGCCTGTAGGTCCGACTCTGTCCCAGGC
TTAACCATCTCCGTCGTCAAGAACGGGGAGGTCGTTTTCGCCGAGGGGTA
CGGCAGACGGGACTCGAACCAGCGGCTCCCGGTGAACAACGATACTCTTT
TCGGTGTAGCGTCCGTTACCAAATCCTTCACGGTCGCCCTTCTGGCCGAC
CTCCTCGCGGAGAAGGGTGACGTCACATGGGACACACCTTTGGTCGACAT
CTTGGGAGAAGGCTTCCGATTTCAAGACGAGTTCCGCACGAAGGAAGCGA
CTCTTCGCGACCTTCTTGCTCACACGATGGGACTGCAGAAGTTTCCAACT
GGCGTCCGTCAGTTCGGGACGGCCGTCGACAGGGCGGAAGCGGCAAGGAG
AATCAGGTACTACTCCGAGGTCCGCCCTTTCCGGACTGCGTTCTACTACA
GCAACAATCTGTACACACTGGCCGGGCACGTCGCCGAAAGGCTTGCCGGG
AAGCCGTACGAGCAGCTGTTACGGGAAAGGATCTTCCTCCCCCTGGGGAT
GAGCGGCACCACGTTCCTGTCAGAGGCGCTTGAGGAGGACAACTTTTCAA
ACTTCGCGGAGAGCTACGGGGTGTACAGCAAGGACGGGCGCTCTCTGCCC
GTAAACCGGGAAATATACAGGCTGATGAAGTTGTCCGCCCCCGCCGGCGG
CGTGGTGTCTAACGCGGGGGACATGGCGCGGTACATGCAGTACCACCTGC
GCCCGGCAGGGGCGGGACCCGACGGCGAGCCCAACGACCTGCTCCGAGAG
GCGCACACGGTCCAGTTCCTGTCCAACCCCGAGGGTGAAGAAAAGGGCAG
GGAGATCTTCCAGCCCCAGTTTCCGGTGGGAGTCATGGACAAGGGAGAAG
GCCTGGGGCTAATAGTCGGCAACTACAGAGGGGGCGTGTTCAGCAGTGTG
AACGGCCCCGTGTTCCGCCGGGACAGAGACGTGCACAGAGTCCTGCACTA
TCGGGTGGCCGACATGCTGCTCGGTCTGGACCCGTGGCTGAACACCACCA
CCGCCTGTAGCTACCCCCAACCCTGGGACACACGCCCTGCCGACCCCCTC
CCCGCGCCTCCCGCAACCTCTCGCGACTTCCCGCGAGACAAACGAGACTA
CGTGGGTTCCTATGGCAACCAAGTCTTTGGCAACCTCACCATCTTCCTCA
ACTCAGCGGACGGCACCTTAAGATTTAGAGCGGGCCTGCTTGGTCGCGGG
GTAGTTCTTCCGCTGAACGCCACGAACAGCGTTCTCCTCAAAGGTCCCCC
AGACATGTTCGCACCGGTTCAAGCCTTCTTTGAGGAAGAAGGAGGGGCGA
TCCACCGCCTTGTGGTGTCGGGAGTTCCTCCCGAGCCGGCCGTGGTGTAT
GAACGAGGCTTGAAGCTTACGGATGGGGACGGGACACATCGGGAGGGAGG
AGGTACACCGGGTTCTGCCTCTGGCACTGAAACTACGGTGTACCGAGCGC
GGTCCTACTGTCCACTGTTAGCGGTCTTTCTTCTTGCGTTTGCCTTTAAT
TGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Blg00559.0-exon-Sc0000042-1570713199:486191..486867 | Blg00559.0-exon-Sc0000042-1570713199:486191..486867 | Branchiostoma lanceolatum | exon |
| Blg00559.0-exon-Sc0000042-1570713199:489211..489483 | Blg00559.0-exon-Sc0000042-1570713199:489211..489483 | Branchiostoma lanceolatum | exon |
| Blg00559.0-exon-Sc0000042-1570713199:489783..489898 | Blg00559.0-exon-Sc0000042-1570713199:489783..489898 | Branchiostoma lanceolatum | exon |
| Blg00559.0-exon-Sc0000042-1570713199:490762..490905 | Blg00559.0-exon-Sc0000042-1570713199:490762..490905 | Branchiostoma lanceolatum | exon |
| Blg00559.0-exon-Sc0000042-1570713199:492136..492228 | Blg00559.0-exon-Sc0000042-1570713199:492136..492228 | Branchiostoma lanceolatum | exon |
| Blg00559.0-exon-Sc0000042-1570713199:492847..493912 | Blg00559.0-exon-Sc0000042-1570713199:492847..493912 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000042 | genome | Sc0000042:486191..493912 + |
Properties
| Property Name | Value |
|---|
| GeneID | Blg00559 |
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