Blg00444.1 (mRNA) - B. lanceolatum

Overview
NameBlg00444.1
Unique NameBlg00444.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:974881..981124+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00444.1 ID=Blg00444.1|Name=Blg00444.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6244bp|location=Sequence derived from alignment at Sc0000078:974881..981124+ (Branchiostoma lanceolatum)
CTTCGTCCCAGCTGGTAGCTTGGAGCGCGCGGACTGACAGGTACCGACTA AAATTGTGCAGAAAGAATAGCTTGCAACGTCAAATACACCTGTTCAGGTA ACACTAAGCTGCTTGTGAACGAACACATTTGTACGAAAATCTGTTTCATT TAAATTTGCGGAATTGAGCTAAGGGAGCTTACATTTTGGGGGAAGCTAAA CTGGGCCGTGTTACATGATGTTACATAATCATGCATGTTTCGGTTGTAGG AGTGTTTTAGGGATTAAAAATGTAGTCTAGATAGCATGTGCTAACCACCA AGCAGATCTTTGGGGTTAAATCATGACGGGTTTTGTGATCCCTTGGCGAG CTGTATATATGATCAGATCCTGGCCGCAGTCAGAAGCCGTCACGAAATTT GTGCCGAAAGATCTGCTTGGAGATTAGCCTCTGCATCTGGCATGATCACT TTACAACTGTTACATAACTTTAATGGTTAAGTGGTAAGTTATAATGTTGC CTGCGCTGCAAAACCCGTCCTCACAGAATAGTTCTACATTCATATTTTTT TTGCCACCAATCCTGGTGGAGTTGACTGACCTCATTACATGTTGTATAAT AACTATAATATACGATACATGTAATCATACTTCACCAATGGAACAATGTA AAGCGCTTCAGATATAAATGGTGTAACATTAAGTATTGATATTTACCTTC GTCAAGAAGGTTATGATTTCGGCAGCGTTTGGATGTAATGTATGTATGTC TGTATATGTTTTAGCAGCATACTGTAAATGCAGAAATGTTCGCGGTGGTT TTATGTTCGTAATTTCGCGGCGACTGTTCACCGCAAACTTAAAACCACCG CAAACATTTTTGTCCAATACTGTAGCAGTATGTGACTATAGCGCTGCCGT GAACTTAAAAGCACAAAATAAAGCGCAAAATAAAAACCATACAAACTTAA ATGCATTTACAGTAACTTGAAGCTACGAGAATGGATAGATTGTTGTGAAA CTCGGTACTAGTATGTGGTTAGTTCATGTCCTATCAAAGAAATAATTAGA TTTTGGGCCCTTAGTGGCTTTCCTTGGCACTGCAGCAGAATTTCTGGTTC TGATATTTTGTTTTGTGTATGTACAAAGGCTGGAAGTCATTATTATTATT CTCTAATTTGCAGACATGGATGCAGACGGCCTCACGCCCCAGAAGCAGTT CCAAGAACACTTCTTCACCTGTGCCAGCAGGGGTGATGTGAAGACCATAG AGGATGTGCTACAGCAGGGCACGGTCAAGATAGATGCAACCAATGACCAC GGCTGGACTGCACTCATGTTCGCTGCCAGGACTGGACAGGACAAGGTGGT CAGACTGCTGTTGGACCACGGGTAAATGTTAACTTTTTATATAGCAGTCA TTATCAGTAAGATTCAGTAACAGGGATGTAGGCAAAAGACTGAGTGGATT TTCTTAACTTCTATCTTGGCTTGAGACATCATGATTAGAGCACCCGGTCT TAGTAGTAAAATACATTGTAAACCATTTTCAAGACAAAGGGACTACTAGT AGAACTGTCATAGACTGTACGCTTGCTAGATCAATAGCTAGCATGCTGAA TATATCAACTACTCTCTAGTCTGACTAAATTGCACTCCGATAGCCCCCTG CCCCTGCCAGCAAGAGATTGTGTAAACAGAGGCTAACTACTATACTAGTA TATGCAGAAGAAGGTCACAATTTTCCGAACCAACCTCTGCTTGTAGATTG GAATCAACAGTAAAGCAGGAAGACAGCATCTAATAGAAGATAGCAGCCTT TGGGGTGTCTTTTCTCATATACCATATACTCTAATGGCGTTGTATTTTGA ATTTCAGAAAGTTTATGTATTTTTTCTTCTGTTTTAAGATGTGACACAAC AGTGATGAACAAGTCGTGCCAGACAGCTGCAGACATCGCTGCATTTTGGA ACCACACGGCCGTTCTGACTGAGCTGGAGAAGAAAGGACAGACGTCTGAC AGTCAGCCACAAAACTTCTGTAACTACTTTGGCTACAACCCTCTGGATCG CTATGCACACAAGAGGAAGGATGAACAGTGGCTAGAGGAAAAACTCAGGG ATCAATCTACTGTTATCCTGCTGTTTCATGATCTTGGGCTTGTGGTGACC AAAGGTGAGAAGCTTGCTGCACAATCACGGGTCACTCAGCCATGCCATTT CACTTTCAACGACACCTCTGCATTGTTCGAGGAACTTGGAACAGAGAAAA TTCTCTTGTTCCTTGGACTGGGGAGGCTGCAACCTGACAAAACAGATGGA NAACGACACCTCTGCATTGTTCGAGGAACTTGGAACAGAGAAAATTCTCT TGTTCCTTGGACTGGGGAGGCTGCAACCTGACAAAACGGATGGACCAAGT CCTCCTACAAGTGACAAGGAGGAGCATCTCCCTGCATGGTTTGCTCTGGA TGTCACATCGATTTCACAAGAGAAAATCCTTAGTATCAAAGAAGGATTGG AGATTGCCTCATCTCCCTTCCCAGGTCTGTTCCAACTACCTGAGAAAGAG GCAGGGATCGTAGCCCAAGCGAGGTCCCTCCTAGCCTGGCACCAGCGGTA CAAGTTCTGCCCAACCTGCGGCAGCGCGGCTGCTGTGGAAGAAGCTGGCT ACAAGCGTAGATGTCAGAAGGAGGGGTGTCCGAGTTTGAAGGGCGTACAC AACACCTCCTACCCCAGGACTGACCCTGTTGTCATCATGTTGATTGTCTC CCAGGATGGGAAGAAGTGCTTGCTGGGAAGGGGCAAACGGTTCCCCGGTA GGATGTACTCCTGTCTGGCTGGCTTTATGGAACCAGGTAAATTCTCGTTC AATGAAGTTTTTTTTTAAAAGTTTCACATATAATCGAATTTGTTTTGTGT GTGTAGGAACTTAAAAGACTATCAGGTTCATGTATATTGTCTGTTGAGTG AGTCTGAAAAATAAGGTGCACAGAAAGAAATTTGGGTGCACCACATAGAA TAAAGTTGAATGTCAGCAAAACATAATTACAGTTTAATGCTCATATAATT GTAATTAAGAACTCCAATCTGTAATTCTATAGCTAACTTCGAATTTCAAA CAAGTAATGCATCAAAGAAAGTGCAACAAAGGGTTAGATTGCTTTTTCTG ATACTGCTTGCTAGTATACTCAATAATACCTTTACCCTTAAGCCTACAAA AATATCTAGGTGCACCAGTGCACCCACAGTCAAAAATTAGGTGCACAGCT CCAATTTGGGGTGCACACAGGTGCACATGCACCCACTATTTCGAGCCCTG AACAATATATTGTACAGTCATGTGTAATAGCTATAATGCTTTATGATTAA CTGTGCCCAGAGATGTGGCTTTTAACCTACATGTGCACATTGCCCCCTCC CTCCAGGTGAGACCATAGAGGATGCCGTGCGTAGAGAAGTTTACGAGGAG TCCGGAGTGAGAGTCGGGCGTGTGCAGTACCACTCCAGCCAACCCTTCCC TCTCCCAGCCTCCCTGATGATCGGTTGCCTAGGTTACGCCACCTCAGAAA CCATCTCAGTGGACAAGGAGGAGTTGGAGGATGCACAGTGGTTCACCCGG CAGCAGGTAAAACACTCATACTTTCAGTTTCCATTATCACCAGGTTCTCC CTGGCTCTCCCATAGAAATGAATAAAATCAAGATAAAATTTATGTTTTGT ACAAAGTGCACAAAGTATCTTGTTTACTCTGTTGACCATCGGTGTACATC ATCCTTGTACATTCAAACCTATTTAAGTGCCACCTCTTCATAAGAACCAC CTGGCTGATGTGACAACTTTTTTTGTGGTCCCATTGAAGCATTAAGAATC CTATCTATATATAGTGACCACCTGTCCATATAGATCAGATTTTATTGAGT GGTCTTCTTGGGCAGTTTTGACTGTACTTGAAAGGAAGAAAGAGGATATA AATGAAATAAACTGTATGAATTTTCATGTATACCAAAGTCCCTTACCCAT TATATTTATGATGACACATCCCTATCTTGGTTAGCTTTAACATTTACAAG TTGATATATGAATGTGTCAAAAGGTGGCAGAAGTGCAGACCGGTGCCCCC CTCCCCACGGATGCCCTGACTAACCCACGTGCTGAAGGCCCCAGTTTCTT CCTGCCCCCAGCCCAGGCCATCGCACATCAGCTGGTTAAAGCATGGCTCA GAATGTCACCTAACCTTTAAACAAAGCTAGAGGGAAGTGCATTCATTGCA CCCCCTATAGGCTTTATAATGTGACATGATGATGATGGTACAGATGTTGA TTAACATTGAAAGGAAAAATCTGAGAAGAGATGCCTTAGAAACCCTTAGA CAAAATTTTTATATGAAAGTATTTTTTGATATCAAGTACTTTATTTGATT TTCTACAGGAAAAGGTTATAGAAATGGAAGATGTTTTATGATAGAGAAGT TGACTTTGAGTCCAAAAAATCAATGCCAAAATGATGAATTTTATATATTA TTTAAGTGTAGACCACTACATACATTTGTAATGGGTTGGAGAGTAAGTGT GCCATTGCTACAGGAAAAGTAGAAGATTTGTGGCAGCTTAACGAAATGTA TCTAAAAACTTAATAAATGAAAAACCAGAGGACCACAAAAACCTCAAACC TAACCTCAATATAGCAGTGTTTCTGCTTTTAGGTGGTGATAAATAGAAAG CAACCACAGGTAAATTGACTTTTTGGATGTCGGTTAAAATGTCTTAAAAT AGCATCAAGTGTTGTAATGTTCAATTGTTTTGTATCTTTTTTTAAATTAT TTTGTCAGATATTACTTGAAGATTTGATAAAGAATTAATATAAAGAGATG TATAGTATCATAAATTGATGCAAATTCCACATGTTTAAACATTGTAATTT GTGTTGAAAGACAGGTAAATTAACTTGAGTGTGAGGTATTTCCTTGTTGG TCAAAGACATTTTAACATTTGCTGTGCTTTGGTTTAGGCTAACTTTTAGA GCATATAGCTTGTAGATGTTCATCTAATAAGCTCATTATAGATATGCCAA TGGTTCAGGATGGTTAACTCTGCCAAGACCTTTGTGTCTGAGTTTCTGAG ATGTAGATTGTAATGTTATAGGTGGAGATGTTTGTAGAATAATGGTTGCC TAATGTGGACATTGAGATTTTCAAATAACTCTAAATTAGGTCCAACTGAA AGGCATTTGGAGATTTAAGCAAAAAGGCTATTTTTTTATGAAATTTGAAA TTTGGCACAACATATTGATGACTGGAATATTAATTCTTGATAGGCATGTT TAACACCAAGTTTTGTTTAATTCGTTTTCTGAACAGTCTGCCTGTGTTTA TATGTCATTGAATATATTCAACACAAAAATAACAGATCACACAATACACA TATGCAATGCAGATGTAATTTATTTCCAGGACTAGAGCACTTCTGACAAA CAGTAAACCAAGAAAGACCAGTCTTAATTGTATATATTACTAGCTGTGAC TAAAATCTTAAACACATGTGCTCAAATAAATTCATTCTCAACCTTTCAGC AGACTTTGTATGTTATCCTTTCTTCAGATAAAGTTGTTCCACACTAGAAT CACAAAGTCAAGAAAACCCAACCTTTTGCTTCTAACACAAAATCATTATC GGAGTATACATAGTGTTTTCAAGGTCATTGTTCTTTCTTTGACAGTCGTC AGTCTCACAGACATAAAATATGACATTGATGGTACCTTACCAGCTTCTTT ACCTGATTGGTCAAGGAGATGCCATATGACTAGAAAGCTAAACTGAATCC AAAGTGCAAAGTGGAAAAAACTAAAATGCTTGACTTGACAGAACATTTCT CTTTATACTTACAAGATGATTATTGTCTAATGCCCAAAAAATAGAAGGTT ATAACAATAAGCATCAAAACGATACTACGTCAAAATGTCGTTAGAGTCAG ACTGTCCAATCAGAAAAGGTGGTTTAGGGAGTCTCGGGTTCGGTTCCCCA CTGCAGGCACTTGCTGATGTCACAAGTACACTCCAGAATGTAGTCATAGG AGTGCTGCTGGAGAGTTCCGTCCTCACACATCATGTCCACAGTTCGCCGC TCGCTCTTGGAAGGCTGGCAGCACTGGCACTCATGGCTGTGGGGTAAGGA AAAGGTGTTATGGAGCATGCCCACAGTTAAATTATCTACAGCCTGGTTTC TATTAAAATGGCATGTTTTAACCTCCTTGCTGCCTAACACTGTA

Coding sequence (CDS) from alignment at Sc0000078:974881..981124+

>Blg00444.1 ID=Blg00444.1|Name=Blg00444.1|organism=Branchiostoma lanceolatum|type=CDS|length=1263bp|location=Sequence derived from alignment at Sc0000078:974881..981124+ (Branchiostoma lanceolatum)
ATGCAACCAATGACCACGGCTGGACTGCACTCATGTTCGCTGCCAGGACT
GGACAGGACAAGATGTGACACAACAGTGATGAACAAGTCGTGCCAGACAG
CTGCAGACATCGCTGCATTTTGGAACCACACGGCCGTTCTGACTGAGCTG
GAGAAGAAAGGACAGACGTCTGACAGTCAGCCACAAAACTTCTGTAACTA
CTTTGGCTACAACCCTCTGGATCGCTATGCACACAAGAGGAAGGATGAAC
AGTGGCTAGAGGAAAAACTCAGGGATCAATCTACTGTTATCCTGCTGTTT
CATGATCTTGGGCTTGTGGTGACCAAAGGTGAGAAGCTTGCTGCACAATC
ACGGGTCACTCAGCCATGCCATTTCACTTTCAACGACACCTCTGCATTGT
TCGAGGAACTTGGAACAGAGAAAATTCTCTTGTTCCTTGGACTGGGGAGG
CTGCAACCTGACAAAACGGATGGACCAAGTCCTCCTACAAGTGACAAGGA
GGAGCATCTCCCTGCATGGTTTGCTCTGGATGTCACATCGATTTCACAAG
AGAAAATCCTTAGTATCAAAGAAGGATTGGAGATTGCCTCATCTCCCTTC
CCAGGTCTGTTCCAACTACCTGAGAAAGAGGCAGGGATCGTAGCCCAAGC
GAGGTCCCTCCTAGCCTGGCACCAGCGGTACAAGTTCTGCCCAACCTGCG
GCAGCGCGGCTGCTGTGGAAGAAGCTGGCTACAAGCGTAGATGTCAGAAG
GAGGGGTGTCCGAGTTTGAAGGGCGTACACAACACCTCCTACCCCAGGAC
TGACCCTGTTGTCATCATGTTGATTGTCTCCCAGGATGGGAAGAAGTGCT
TGCTGGGAAGGGGCAAACGGTTCCCCGGTAGGATGTACTCCTGTCTGGCT
GGCTTTATGGAACCAGGTGAGACCATAGAGGATGCCGTGCGTAGAGAAGT
TTACGAGGAGTCCGGAGTGAGAGTCGGGCGTGTGCAGTACCACTCCAGCC
AACCCTTCCCTCTCCCAGCCTCCCTGATGATCGGTTGCCTAGGTTACGCC
ACCTCAGAAACCATCTCAGTGGACAAGGAGGAGTTGGAGGATGCACAGTG
GTTCACCCGGCAGCAGGTGGCAGAAGTGCAGACCGGTGCCCCCCTCCCCA
CGGATGCCCTGACTAACCCACGTGCTGAAGGCCCCAGTTTCTTCCTGCCC
CCAGCCCAGGCCATCGCACATCAGCTGGTTAAAGCATGGCTCAGAATGTC
ACCTAACCTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00444.1Blg00444.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00444.1-exon-Sc0000078-1570713199:974881..974920Blg00444.1-exon-Sc0000078-1570713199:974881..974920Branchiostoma lanceolatumexon
Blg00444.1-exon-Sc0000078-1570713199:976044..976225Blg00444.1-exon-Sc0000078-1570713199:976044..976225Branchiostoma lanceolatumexon
Blg00444.1-exon-Sc0000078-1570713199:976769..977155Blg00444.1-exon-Sc0000078-1570713199:976769..977155Branchiostoma lanceolatumexon
Blg00444.1-exon-Sc0000078-1570713199:977250..977716Blg00444.1-exon-Sc0000078-1570713199:977250..977716Branchiostoma lanceolatumexon
Blg00444.1-exon-Sc0000078-1570713199:978287..978486Blg00444.1-exon-Sc0000078-1570713199:978287..978486Branchiostoma lanceolatumexon
Blg00444.1-exon-Sc0000078-1570713199:978954..981124Blg00444.1-exon-Sc0000078-1570713199:978954..981124Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:974881..981124 +
Properties
Property NameValue
GeneIDBlg00444