Blg00439.0 (mRNA) - B. lanceolatum

Overview
NameBlg00439.0
Unique NameBlg00439.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:622350..628975+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00439.0 ID=Blg00439.0|Name=Blg00439.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6626bp|location=Sequence derived from alignment at Sc0000078:622350..628975+ (Branchiostoma lanceolatum)
ATGTTCCGGCTGCTCCGAACGGTGGAGAAGCAGGGCCTTGTGCCGCTGAT TGACAACCTGGTCAGTGGGAACATCCAGAAGGTCATATCTGTGCAGAGCC GCAACCTCAACACCTTCAAGTGTCTCTTCTCGTCCAGCGGAGAACAAGTC ACGCTAAAGGGGATCCCGTACAGCGAGCTGACAGTCGGCGTACCCAAGGA GACATTCCTGAACGAGCGTCGAGTTGCTCTCAGCCCGGCTGCGTGTGCGA TCTTGACAAAGGCAGGGTTCAAGGTGAGTGTGGAACGTGGTGCCGGTGCG GAGGCACAGTTCAGCGAGTCCGAGTACGTCAGCTCAGGTGCGGAAATCAA GGATACCGGAGATGTCTTCAAGTCGGACATTATCCTGAAGGTGCGAGCAC CGAGCGCAGGGGAAGTCGGCCAGCTCAAGGATGGCGCACACCTCATCAGC TTTCTATACCCAGCACAGAACCAGGAGCTCATCGACCTGCTGGCAAAGCG GAATGCCACCGTACTGGCCATGGACTGCGTGCCCCGTATCAGTCGTGCGC AGGTGTTCGACGCCCTGAGCTCCATGGCAAACATTGCCGGCTACAAGGCA GTGTTAGAGGCAGCCAATAGCTTTGGACGATTCTTCACGGGTCAGATCAC AGCTGCTGGGAAAGTGCCTCCAGCAAAAGTCATGGTCATCGGAGGTGGTG TGGCTGGTCTGTCTTCCATCGGTACTGCAAAGAACATGGGAGCCATTGTG AGAGGGTTTGACACCAGAGAGGCTGCCAGAGAGCAGATCAAGTCCTTAGG AGGAGAAGCCCTTGAAGTCCACGTGGAAGAGTCCGGTGAAGGAGGTGGCG GCTATGCCAAAGAGATGTCCCCAGAGTTCATCGCAGCAGAGATGGCCCTA TTCGCCAAGCAGTGCAAGGAGATCGACATCCTGATCTCCACGGCGCTCAT TCCCGGCAAGCCCGCACCAAAGCTGATCTCCAAGGAGATGGTCGAGTCCA TGAAGCAGGGGTCCGTCATCGTCGACTTGGCAGCGGAAGCAGGTGGCAAC GTGGCGACGACGAAACCCGGAGAGAAGTACGTACATCACGGGGTGACGCA CATCGGGTACACCGACTTCCCCAGCAGACTGCCCACCCAAAGCAGCACCC TGTACGCCAACAACATCAGCAAACTCCTGCTGTCACTCGGAGGGAACGGG GAGTACGTGCTGGACATAGAGGATGAAGTCGTCCGAGGTTCCATCATCCT GGACAAGGGCAAGATGATGTGGCCGCCACCCCCACCACCGAAGCTGGACG TCACCCCAGAGGCCAAGCCAGCAGAACAGGTCGCGGTAGGACCACCGGAG CCCAACTACTTCATGGATACCATGAGGAGTGCTGGGATGTACTCTGCCGG GCTGGGTGTCGCAGCCCTTCTCGGAGTCGGCTCACCAAACCCAGCCTTCT CCACCCAGCTCACTACCTTCTCTCTGGCTGGCATTGTCGGGTACCACACC GTGTGGGGCGTAACCCCGGCCCTTCACTCCCCACTCATGTCCGTCACAAA TGCCATCTCCGGTATCACTGCCGTGGGAGGGTTGCTCCTGATGGGTGGAG GCTACTTCCCCAACAACTGGCCCACCGCCCTGGCCGCTACAGCGTGCTTC ATTTCCTCCATCAACATCGGCGGCGGCTTCGTCATCACGCAGAGAATGCT GGACATGTTCCGTCGCCCCGACGATCCACCAGAGTACAACTACCTCTACG CCCTCCCCGGTGTCGGCTTCATCGGAGCCTACAGTTACGGTGAGATGATG GGATACCCCGAGATGTACAACCTCACCTGCCNTGTACAACCTAACCTGCC TCGGTGCGTCCCTTTGCTGTGTCGGCGCCCTGACAGGGCTAGCCCACCAG ACCACCTCACGTGTGGGCAATGCCCTCGGGATCATCGGTATCGCCTCCGG CATCGCTGCCACCATTGGTATCGTGGACGTGTCGGCGGAGACCTACATGC AGATGGGAGCAGCCATGAGTGTGGGGGGCGCCCTCGGAGCCATCATCGCC AAGCGCATCATTATCAGCGACCTCCCACAGTTGGTCGCGTTGTTCCACAG CTTCGTCGGAATGGCTGCCGTGCTGACCTGCGTCGCCACCTACCTGGCCC ACGCCCCCCACTGGGGAGATGATCCTCAGACCATCGAGAGAATCGCCCAG TTCCTCGGCACGTTCATCGGAGGTGTCACCTTCACTGGCTCGCTGATCGC CTATGGAAAGCTTCAGGTAGGTTCCAATTCACAGAGAACATGTTTGTATT ACTGTAATTCTTTATTTGCTAAATTACGGTAAATTAATTTTAGGGACTTT CATGGTCACTATTCAAAATTTCAACCACTAAAATTTAATCACAAATATTT GATCACTCTTCCTCATGACTGTGTTGAAGCAAGAACTTTGTTGCCACTGT GAGAAATAAATGCCGCAAATTCCACCCTTTTCCCCCAACTGCTACAGTAC CAACCCCGCTATCAAATGGATTTACAGTATTCTAAGCTTTAGTTTGGGAA TGGCGTTAGACTTCTAGAAAGTTTGTTTTTTTCCTCCAAAGAAATCTGAC ACTCATCTTAAATTTTGAACATTTTTCCACCACTAAAACAATACAATTGA TGTTGTATTTTTTACAGGGTACTCTGAAGTCTGACCCCCTCCTGCTCCCT GGCCGCCATGCGCTGAATGCAGGAATGATGGCCGTCAACGTTGGAGCCTT GGGCTACTTCCTCATGGACCCGAGCATGGGAGCCGGCATTGCGTGAGTCC ATTGGCTGACTGCTAACCAGGGTAGAGCCGTGTACTGTACACTGTACACA TACAGTACCGGGTACAATCAATTAGGTACAGGTCCAAAATACCTGAACCC TGGTGTACCTGTACTGGACCGGTACTAATCAGGTCAAGCCTGACTGAGGG GATGGCTACTTTGACAGATAATATTACTATGAAATTACCGTGGCAGTGCA CTAAAGCCACATCTATTATAGACTACTATACTCCAGCACATAAAACACAT TTGTAAGGCCGGAGTCAAATTTTCATCTGTGTTTTCATAAAAATATTACC CAGCACAATTACAACATGCTTTTGTCCGTATTGAAAATCTGCTATTTTCT GAACATTAGTAGCTTAGGTACAGGCTCAGGTCCGGACCTGTACCTAAACC TGTGTACCTGTACCTAAAATTTGTTTAGGTACACAGCTCTAAACCTGGGG TGTCTCCAAGAGCCATTCCTCCGTCCTGGGACAGAATGTTGCTTGTTGAA CTTTATGACATGAAATTGATGAAAATGTATTTTCGTAAGCTTAAAATGAC CGATTTAGCAACTAACATGGGCTCCCAATCAATGAGTGGGACGGAAAAAA TTTAAAGCTGGAGTCAGCTCTGCTGCTAACACTTGACTACCACTCGAACC ACACTGTCAGCCCAGAATCGTCTGTCCTCCATTGCCTCCCCCTTAGGCTG AATTGTGTGATACATTACAAGGAACAATGCTGACAAATCTTCTCTTAGAT TAACATTGTGAAACCACTGAGATTAATAGACCTTTGTATTAAAGGCAACC TAAGCAATATTAGGGCGCCGAAAGTCATATATTCAAAATCAATTTTTTTC TGATTTCTATCCATAGTTAGTTTATATAACACTATCCCATTGTATATCGA CCATCATGGAGCAAAAATGTGATGTCGTTGTGCAGTGGGAACTCATTGAA AATCTGAGCACTTGGAGGCCAGCCATCATTTCAAATCTTCCGAACATGCA CGATTCTGACCGATAAATCCCGAACGCTTCCGAAGAAATAATCACGTGGT CATGGCTCAATGTACGTCACGCGGCCGGAAGTTACCGAAGATTGTCGACA GAAAACGGTTACGACTCGATTCTGGGCTGATTTTTGGGGGGACCCAATAA ATAAAATACTCCTTTTGTGGCTTGCTTCTGTACTATTTTTAAACGCCCAA AGTATGAAATAATGATGCAGATGTGCTAATATAGGGAAGTAATAATATTA TTGTAAATTTCAACCTCACCAAAAATAATTGCTTTCCCCAGAATATTTCA AGTTTTACCCCCTGAAATCGCTTAGGGCACCTTTAAAATGAGATACATAA TAAAAGCATCAACAAAAGAATGAAATACAAAAAGTACAATAGTAGCACTA CAGTCATAGGTGGGCAAAAGTTTCGCAGTGGCTTGAAGTTCGTGCCGAAA GTTCACCACAAAAACAGCAAACACAAAACCACTGTGAACATTTCTGCATT TGCAGTACAACTGATCACACTTTACTGATGTTCTTACAGATCTCTTGGGA CGGCTACTTGCCTCTCCTCTGTGTTGGGTGTGACACTGACATCAGCCATT GGTGGAGCAGACATGCCTGTGGTCATCTCTATGCTGAACAGTTACAGTGG ATGGGCACTGTGTGCTGAAGGTACGGTCCTCGATATGGCACCTTTCATAG TTTTTTTTCATGCTGTAACTGGTAGGTGTACATATGTCAAAAATAGCTGA CTTCCTGCTATCTCATGATGTAAAGGAGATACGGTAATGAGTAGAATTCA TTTTTATTTAGGGCAATGCTTTAGGGACTTACCAATGAAAAGTGTATTCC CCTTTAACCCTTAAGCTGAGTTTCAGCCCAAAACAAACTCTCGGGGTTTC CATTTGACCCCTGACCTCCGACCCGTAGCCCGTGAAACAGCCCAGCTTCC GGGTTTCGCATGCTACACACATACAGTGCTGTTTTCTCCCGGGGAATTTA CGGGGATATTTATGAAATACCCTGTCCTTCATAAATCTGTATCACAGATG TATCTGGGAGTGACAGCTTAAGTTGAATTATGATACTGAAAACTTTTTTG CAAAATCACAAACCTGTCCCATTAAGGGTGCCAATGACTTGGATATTTGA TAGATACGGTAGATATTATCTGCTCTGCTTCTCACCACAGTCACTATTTC CACAGGGTTCATGTTACAGAACAGCCTGCTGACTGTTGTTGGCACTCTGA TTGGCTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAGGCCATGAAC CGCTCTCTTATCAATGTCATCTTCGGCGGCCTGGAGGCCAAGACAAAGAC TTGGGGAGGTAGGGAGAATCGTCAAGTATAGACATTCATTATATTGTGTG CTTTTAATCTTATTATGTTACTAGGTAATATCCGGGGAAATGCTTCATGC AGTGTTACAATATAACGTAAATATAGAAAACAACACGGGCTATTCCGTAT CACCCAAGGTACCAGCCCGACCGCAGGTAGAATGGCCCATAGGCCGGAGG GCGATCCGACCCGCGGGAGGGCTAGGACCATGATGCGGAATGCACCATGT TGTATTTTATTTATGTCATACCCACCCGAGAAAACACACATTTCAATGCG AAATGCGCCTGAAGTTGAGGGAGTTTTGTGTCCTCGAACAGAAAACTGTA ACAACATTGATTCCAACCTCCAAATCCGGTATTCGAATTTTCAACGGTGG CGCAAACGGCACGCTCAAAATGCATTATAAGTATTCTATGAAAGCCCGTG TGATACAACTTAGAACCCCATGTGATACGGAAAATTATTACACGTTATTG AATGTTTTCACGGCCCAGGTATGGCATTAAGTTATTTTACTGTCTACGCT GTATATGTCATTCTTGTAAGGCCGAACTCTTTCCATGTGGTAGAAAGGTC CAAAGACTTTGATATGAGATGGACGTGGAAGGATGATGGGTGAGGCATAG AGAATGGAGATTTAAGTCTACTCGTAGTGTTTGCGGAGAACATATGGCAA GAAGACTTACAGGAACAAAAAAGGGAAAATGAAAGCCATGGACTGCAACA GTTTGCCCACTTTCTAGTCCAACTCAGAACTACATTTGTGCCCTCCACCT TATCATAGCAGCAATGCTGTATTTGGTTTACTAGCACAGCTGTCAGTTCT GCATATCAAAATCTGGTACTGTTTTTAATATGTATAACAATTCTTGCCAT TCTTCATCAGGTGGCAAACCCATGGAGATCACCGGCACGCACACTGAGGT CAACGTGGACCAGTCGGTGGAAATCATCAAGGAATCAAAGGACATCATCA TCGTTCCTGGCTACGGTCTCTGTGCTGCCAAGGGACAGTACCCGCTGGCT GCCATGATCGACACGCTCGTGAAGAATGGAAAGAACGTCCGCTTTGGGGT CCATCCCGTGGCAGGGCGTATGCCCGGTCAGCTCAACGTTCTCCTCGCCG AGGCCGGCGTTCCTTACGACATCGTCTTGGAGATGGACGAGATCAACCAC GACTTCAAGGACACCGACCTGGTTCTGGTAGTAGGCGCCAACGACACGGT GAACTCCGCGGCCCAAGACGACCCCAACTCCGCCATCGCCGGCATGCCCG TTATGGAGGTGTGGAAGGCAGCGAATGTCATCGTCATGAAAAGGACTCTG GGTGTGGGGTACGCCAACGTAGACAACCCGGTGTTCTACAAGCCAAACAC GTCCATGCTGCTCGGGGATGCCAAGAAGACGCTAGAAGGCTTGCAAGGAA AGGTTTCAGATTACTACACCAGCTAG

Coding sequence (CDS) from alignment at Sc0000078:622350..628975+

>Blg00439.0 ID=Blg00439.0|Name=Blg00439.0|organism=Branchiostoma lanceolatum|type=CDS|length=3144bp|location=Sequence derived from alignment at Sc0000078:622350..628975+ (Branchiostoma lanceolatum)
ATGTTCCGGCTGCTCCGAACGGTGGAGAAGCAGGGCCTTGTGCCGCTGAT
TGACAACCTGGTCAGTGGGAACATCCAGAAGGTCATATCTGTGCAGAGCC
GCAACCTCAACACCTTCAAGTGTCTCTTCTCGTCCAGCGGAGAACAAGTC
ACGCTAAAGGGGATCCCGTACAGCGAGCTGACAGTCGGCGTACCCAAGGA
GACATTCCTGAACGAGCGTCGAGTTGCTCTCAGCCCGGCTGCGTGTGCGA
TCTTGACAAAGGCAGGGTTCAAGGTGAGTGTGGAACGTGGTGCCGGTGCG
GAGGCACAGTTCAGCGAGTCCGAGTACGTCAGCTCAGGTGCGGAAATCAA
GGATACCGGAGATGTCTTCAAGTCGGACATTATCCTGAAGGTGCGAGCAC
CGAGCGCAGGGGAAGTCGGCCAGCTCAAGGATGGCGCACACCTCATCAGC
TTTCTATACCCAGCACAGAACCAGGAGCTCATCGACCTGCTGGCAAAGCG
GAATGCCACCGTACTGGCCATGGACTGCGTGCCCCGTATCAGTCGTGCGC
AGGTGTTCGACGCCCTGAGCTCCATGGCAAACATTGCCGGCTACAAGGCA
GTGTTAGAGGCAGCCAATAGCTTTGGACGATTCTTCACGGGTCAGATCAC
AGCTGCTGGGAAAGTGCCTCCAGCAAAAGTCATGGTCATCGGAGGTGGTG
TGGCTGGTCTGTCTTCCATCGGTACTGCAAAGAACATGGGAGCCATTGTG
AGAGGGTTTGACACCAGAGAGGCTGCCAGAGAGCAGATCAAGTCCTTAGG
AGGAGAAGCCCTTGAAGTCCACGTGGAAGAGTCCGGTGAAGGAGGTGGCG
GCTATGCCAAAGAGATGTCCCCAGAGTTCATCGCAGCAGAGATGGCCCTA
TTCGCCAAGCAGTGCAAGGAGATCGACATCCTGATCTCCACGGCGCTCAT
TCCCGGCAAGCCCGCACCAAAGCTGATCTCCAAGGAGATGGTCGAGTCCA
TGAAGCAGGGGTCCGTCATCGTCGACTTGGCAGCGGAAGCAGGTGGCAAC
GTGGCGACGACGAAACCCGGAGAGAAGTACGTACATCACGGGGTGACGCA
CATCGGGTACACCGACTTCCCCAGCAGACTGCCCACCCAAAGCAGCACCC
TGTACGCCAACAACATCAGCAAACTCCTGCTGTCACTCGGAGGGAACGGG
GAGTACGTGCTGGACATAGAGGATGAAGTCGTCCGAGGTTCCATCATCCT
GGACAAGGGCAAGATGATGTGGCCGCCACCCCCACCACCGAAGCTGGACG
TCACCCCAGAGGCCAAGCCAGCAGAACAGGTCGCGGTAGGACCACCGGAG
CCCAACTACTTCATGGATACCATGAGGAGTGCTGGGATGTACTCTGCCGG
GCTGGGTGTCGCAGCCCTTCTCGGAGTCGGCTCACCAAACCCAGCCTTCT
CCACCCAGCTCACTACCTTCTCTCTGGCTGGCATTGTCGGGTACCACACC
GTGTGGGGCGTAACCCCGGCCCTTCACTCCCCACTCATGTCCGTCACAAA
TGCCATCTCCGGTATCACTGCCGTGGGAGGGTTGCTCCTGATGGGTGGAG
GCTACTTCCCCAACAACTGGCCCACCGCCCTGGCCGCTACAGCGTGCTTC
ATTTCCTCCATCAACATCGGCGGCGGCTTCGTCATCACGCAGAGAATGCT
GGACATGTTCCGTCGCCCCGACGATCCACCAGAGTACAACTACCTCTACG
CCCTCCCCGGTGTCGGCTTCATCGGAGCCTACAGTTACGGGCTAGCCCAC
CAGACCACCTCACGTGTGGGCAATGCCCTCGGGATCATCGGTATCGCCTC
CGGCATCGCTGCCACCATTGGTATCGTGGACGTGTCGGCGGAGACCTACA
TGCAGATGGGAGCAGCCATGAGTGTGGGGGGCGCCCTCGGAGCCATCATC
GCCAAGCGCATCATTATCAGCGACCTCCCACAGTTGGTCGCGTTGTTCCA
CAGCTTCGTCGGAATGGCTGCCGTGCTGACCTGCGTCGCCACCTACCTGG
CCCACGCCCCCCACTGGGGAGATGATCCTCAGACCATCGAGAGAATCGCC
CAGTTCCTCGGCACGTTCATCGGAGGTGTCACCTTCACTGGCTCGCTGAT
CGCCTATGGAAAGCTTCAGGGTACTCTGAAGTCTGACCCCCTCCTGCTCC
CTGGCCGCCATGCGCTGAATGCAGGAATGATGGCCGTCAACGTTGGAGCC
TTGGGCTACTTCCTCATGGACCCGAGCATGGGAGCCGGCATTGCATCTCT
TGGGACGGCTACTTGCCTCTCCTCTGTGTTGGGTGTGACACTGACATCAG
CCATTGGTGGAGCAGACATGCCTGTGGTCATCTCTATGCTGAACAGTTAC
AGTGGATGGGCACTGTGTGCTGAAGGGTTCATGTTACAGAACAGCCTGCT
GACTGTTGTTGGCACTCTGATTGGCTCGTCCGGTGCCATCCTGTCCTACA
TCATGTGCAAGGCCATGAACCGCTCTCTTATCAATGTCATCTTCGGCGGC
CTGGAGGCCAAGACAAAGACTTGGGGAGGTGGCAAACCCATGGAGATCAC
CGGCACGCACACTGAGGTCAACGTGGACCAGTCGGTGGAAATCATCAAGG
AATCAAAGGACATCATCATCGTTCCTGGCTACGGTCTCTGTGCTGCCAAG
GGACAGTACCCGCTGGCTGCCATGATCGACACGCTCGTGAAGAATGGAAA
GAACGTCCGCTTTGGGGTCCATCCCGTGGCAGGGCGTATGCCCGGTCAGC
TCAACGTTCTCCTCGCCGAGGCCGGCGTTCCTTACGACATCGTCTTGGAG
ATGGACGAGATCAACCACGACTTCAAGGACACCGACCTGGTTCTGGTAGT
AGGCGCCAACGACACGGTGAACTCCGCGGCCCAAGACGACCCCAACTCCG
CCATCGCCGGCATGCCCGTTATGGAGGTGTGGAAGGCAGCGAATGTCATC
GTCATGAAAAGGACTCTGGGTGTGGGGTACGCCAACGTAGACAACCCGGT
GTTCTACAAGCCAAACACGTCCATGCTGCTCGGGGATGCCAAGAAGACGC
TAGAAGGCTTGCAAGGAAAGGTTTCAGATTACTACACCAGCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00439.0Blg00439.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00439.0-exon-Sc0000078-1570713199:622350..624138Blg00439.0-exon-Sc0000078-1570713199:622350..624138Branchiostoma lanceolatumexon
Blg00439.0-exon-Sc0000078-1570713199:624236..624615Blg00439.0-exon-Sc0000078-1570713199:624236..624615Branchiostoma lanceolatumexon
Blg00439.0-exon-Sc0000078-1570713199:625017..625141Blg00439.0-exon-Sc0000078-1570713199:625017..625141Branchiostoma lanceolatumexon
Blg00439.0-exon-Sc0000078-1570713199:626689..626819Blg00439.0-exon-Sc0000078-1570713199:626689..626819Branchiostoma lanceolatumexon
Blg00439.0-exon-Sc0000078-1570713199:627355..627507Blg00439.0-exon-Sc0000078-1570713199:627355..627507Branchiostoma lanceolatumexon
Blg00439.0-exon-Sc0000078-1570713199:628410..628975Blg00439.0-exon-Sc0000078-1570713199:628410..628975Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:622350..628975 +
Properties
Property NameValue
GeneIDBlg00439