Blg00431.1 (mRNA) - B. lanceolatum

Overview
NameBlg00431.1
Unique NameBlg00431.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:1045584..1051958-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00431.1 ID=Blg00431.1|Name=Blg00431.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6375bp|location=Sequence derived from alignment at Sc0000078:1045584..1051958- (Branchiostoma lanceolatum)
CCTCAGGTGACCCCAAATATCGAATGGGGATTTTTAATATCGACCACAAC AGTGCTGCTATGTTTTGACAACCATCTTAAACATCACGTCATGATAGTTG ATTGTTGAGATTGATAAGCTCACGTTGTAAAAATCTACTCATGCATTTAT AACCATTAATCTTTAGTACAACCTTCTACACCCTGTAATCGTAATGGGAT ATTCCAGGCCAAAGATTAAAGGTCAGACACCTAGTCGCATTTGTTGTAAC AGAACTTGGCAGTGTTCCCGGTTTTTAGTCAATGTTTGATGAAATCAGCG TAGCGATTTATGTCCAACCTTCTCCCGCTGGTGTCCGGGCGCGCCTTGTT CCGTATCGGAGTCGTCTGGAGTCACCTTCGCACGAGTTCTGTCGTCATGG CGGCCCCCACGAACAGCCTGGTCCGGCACCACACCACGGCCGGAGTCATT ATCATCGGGGACGAGATCCTGAAGGGATACACACAGGACACCAACACCTA CTTCATCTGCAGGTGACAAACTTGCAAACATAGATGTGACGCCGTTGCAC AACCAGTTACAGCTTAGCTTTTGGGCCGTCATCCGTCTTGCCCCCCTCCC CCCTGTTACATCATGCTCAGAGTAAAGTCATGTCAATGTTTTATTGCACA ACAATTGTAACAGGTACAATGTAAGATAAAGCGATATATAAGACTACTGT TAAGTTACATTCATGTAGTACTTTCTACACATAGATTCTATGTCATATAA GTTCTTTATACAGTCAAAACATAACCTAGTAAGAAGACTACTCATGTACC CTGGGAACCAGACACCGTGTATCAACCTTCACCCAATTCCCGGGCCTACC CTCCTGCTGGCCCCGACAATCCACCACGTGTTGAGGTAGCGGAGCTTGGG GGCTAGCAGAGAGTGGGGCGTGGTGGATCGTCGGGGCAAGTGGGAGGGTA CTAGTAGGCCCGGGAAAGCTTGGGTGGCGCGGCGATACATGGTGTCTGGT TCCCAGGGTACATGAGTAGTCTTCTTACTAGGTTACGTTTTGACTGTATA AAGAACTTATATGACATAGAATCTATGTGTAGAAAGTACTACGTGAATGT AACTTGACAGTAGACTTATATATCGCTTTATCATTGCATTGTACCTGTTA CAATTGTTATGCAATAAAACATTGACATGACTTTACTCTGAGCATGATGT AACAGGGGGGAGGGTGGCAAGACGGATGACGGCCCAAAAGCTATGTTGTA ACTGGTTGTGGTGGTAGAACAATAAACAGGATTCTTAATGCCTATTTAAA CACAGAAATTTATCTAAGGACGTCACCTTAAGTGGTCATATTGTCCAGGT GGTCTGTATGCTTGTAGATGGTCAACTGTACAGGCTTGACTGTAAATGTA ATTTGCCACAGACTTTTTAAAGATTTGCTCACCAAGCAGAGAAATGTGTC AGTAAAGATGCACGACTAAGTGCAGTTATATTTCAATGCAGAGGTAACAT AGTTTGGATGCTATAATAATAATCTGTAACATTTTCTGTTCCAGAAAACT CCACTCTCTGGGTGTAAAAGTAGAGCGTGTGTCCGTAATCGGAGACGACC TCCCTACCATAGCCGATGAGGTGGCACAGTTCTCCAAACGCTACACCTAT GTCCTGACGGCCGGAGGGATAGGTCCCACACACGATGACCTCACCTTCCA AGGGGTTGCTGACGCCTTTGGTGAGAAGCTTGAGCCCAACCCTGAACTTG TAGAACTTTGTCAGAAGTACCTCGGTGCAGATGCCAGCGACATGTCCTCA CCGCGTATGAAGATGGCTCTCGTACCGGAGAGCGCGAAACTGCTCTTTGG CTACGACAATAAAACGAAGCAAAAAGCCCGCTTTCCCATCGTCAGTGTAT GCAACGTTTTCGTTTTTCCCGGCGTCCCAGCCCTGATGGAGAAAGCCCTG ACCATGTTGGAAGATGTGTTTTCTAACAAAGATGTCACCTTTCATTTCAA GGAGGTTTATGTCAGTGCAGATGAGACATCCATTGCACCATACCTGAATA TCGTTGATGCCAAACACCATAGTAAGGTACAACTGGGGTCCTATCCGGAC TGGTACAATAACTACTACCGTGTCAAGCTGACTCTAGAGTCGGAATCAGA AGACGACTTGAAGGAAGCTCACCAACATCTGCTCAGTCTACTGCCCCAAG ATAAAGTGGTGGACTATGTAGAGAGAGATCCTGTAGGACAGGCGGCACAA GAGGTGTATGGTCTTGCAGACAAAGACAGCGATCCCTTTGGCATCAAGGG TAGGTTACAGACTCATTGTTAGGGTATTTTTGACAGTTTAACATCTTGTT AAGTTGTGTATAGTCAAGACTGTAGAAGAATACCTCTCAAGCCAAGTCAA GGGACCAATAAAATCTGGTCTATATGGAATGATAGTCACTATAGACAGGA TTCTTAATGCTTATGTCAAAAGAAAAAATTATCTAAGGGACCACCAAAAA GTGGTTGTATAATGCCTACATCTACGAGTAGGTGGTCCTTTTGGAGAGGC GGTCACTTACTAGTATATAAGGGTTTGACTGTATCTTTTGGTTGCAAGGA AAATCTTTCTTCAATCTAATTTTCAATGTTGGGTTTCAAGTGAAAGACTT GAAATTTTTATGGTACAAGTACCATACAATTCTTTGCCACTCATGACTAT ACTTTGTCTGATGATTCATTGATGTACTGTACATGTCATACCAGATTACC CAGTGATATAGCTTTTTATGTGCTGTTAACAACACATTACGTAACAGTAA ATTGATTTCTGGTGTTTTTTTTTCTCTAGTCAAGGCAGCTTTATCAGTAG TCGAAGAGTGTCTGGAGAAGTATGAGGTTCCAGAGCTGTGTGTGAGCTTC AACGGAGGAAAGGACTGCACAGCACTCCTGCATCTTGTACATGCTGCTAT AGCAAAGTAAGACTTTTGTTTTAGAGAATTTTGATTCCTTCTCTGAATTC ACAATGGCAACTTTGCCAATATAAGATGTGAAATGTGTATGAACAAGAGT ATCTGAAATCTCTACAAGCTTTGCTAGGTTGTCTGTCTCACATGTATAAT GTCTTGCTTTATGCTTGTACATTATCATTGATTGTCGTTCACTTGCAAAA GGCCTAATTTGCAATAAACTTTAACATTAAGGACACTTGTTGTTGCTGCA GGAAGTACCCAGTCGGTCGGCCACAGCTACAGGTGCTGTACATACAGCGA CCTTCACCCTTTCCAGAGACAGAGGATTTCATTAGCAAGACTGCAGAAAG GTACATAAGGTTAAAAGAAATTAGAATTCATTTTAAAGCTTTTCTATCTT CTTCCAATGGCCACAAATCCAAGACAACAATATTTTACAGGTTGCTCCTT CAAACCAGAATGCAGACATTTGCTTCTAATTGCATTCAACCGTCCTTAGA TAAATGTTTTATTACTTATATAGAATCTTTATCTTTGCAACAACAATGTC TATGTCTGCCCATGTGCTGGCCTATTTCTCCATACAATTACTGCTCTCCA GGCAACCCAATCTCTAGAGTTCTATTTGTTTGTTTGTTTGTTTGTTTGTT TGTTTGCTTGCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCAAACC CTTATAGGGTAAGTGGCACATAGGGCAGCATGTTTCCTTGCTGTTTCAGT AGCAGGGTATATTTACAATTTTTACAGGGAGGGGTTACTAGCCCTTCCCC TTTAACGTGCTCGAGGCACCTCCTTGGCACACCCTGGATTGAACCGTGGT CTCACAGTTACAAACAAGTTAGAACCAGGAGCTCAACTATGATGCTACTA CCAGTTGAGCAATAGCGACATCCCTCCAAGTGTTCTAATACTTGGGCTCA AGTCTGCCATATAATAAGCACATGGGTTTTATTTCAGGTACAACCTTAAG ATGCACACCATGTCGGGAGACTACAAGGAAGCCCTGCAGGAGTTGAAGAG GACCCAGCCCCAGATCCAGGCTGTGTTAATGGGACAGCGCAGGGGAGACC CCTATGTGTCACGCACCAACATGGCAGCCTTCTGTATGACTGACTCAGGT TGGCCCCAGTACATGAGGGTTAACCCCATGCTGGTATGTACATGTACTCT CAACCTGAAAACAATACATGTAAGGCCATGTTGATTCGATTATATGGATG ACATCTATGCACACATCAATTTTTGTCCGTTTCCAAAAAGGTTTTCGGAC ATACTGTAAATTGTACAAAGCAGCTGCAAAATGAGCAAATATGTGCCATA CACTGCAAAAATATTTTGAAGGCAATTTTTTTATTTGCATACACACCTCA GTTTGGGGTTCCCAGAGGATGTCATCCATATAAGTGAATCAACATGGCCT AAATGGGGGTACACCTGATGTACACATACTGACAATTATGAATAAGGCCA CACCAATTTGATTTCTTGGTTAACAGATTTTTTTTAATTTTAGCAAGAGG AACTCATTAAAACAGAAGGCTGGGGTAAAAACTTGCACCTGACCTGTTAA CTCCCTGAAACTGTGTGCACCAAAGTACAAACTTTCCTCTAAGATCCTGT TTTCATGTTAATTTTCCAATATATCATTTTTTTAAAAATCCGTTAACCAA GAAATTTAAATGGTGTGGCCTAAGAATCACAAAAGTGTTACTAGCTTGGT GGCTGTGGATAAGTTCATTCTCCTGGTCAAATAGCAGGGTTGTAAATGAA TCACAAAGTTAACTCATGCTATTACCAAGGAAAGTTTGATAAATGGAGAG AACAATTAATGTATCTATTAAACCTGTTCCTGTTTTTATGAGGGTTTTGT TTGTTTTCTTGACAGGAGTTCACATTCCATGATGTATGGGGGTTCCTGAG ATCCCTGTACCTGCCATACTGTATACTGTATGACAGAGGGTATGTACATT TTCTTCTACATCGTCTTTGCGGTTGAAACAATTCTGTAGTAGACATTAGA AACACATAGTCCTGGTGTCATGAATTTGCAGTGTAGAGGTCACAACAAAA ACGTGAAAATAAAGCCACCACAAATATTTCATGATTTACAATCATTCAGT GGTGAAGGTTAACAAGATTAAGGTCTCATTCATAAGCTTTTCGCCCTATA GGCTTATATGTTATAAAACATGTTATACATGGGTGTGTTCGTAATGAAGC TATAGGAAATGCACCAAGGTCATTCATTCTCTGTTGAGCACATTTACCCT AGATCATGTGAAAAAATTGCCAACTACCAGTTGGCATACAATTCCTTTTT ATAGCAATCACAAACTGCACTTAGCTACACCCCCAAAATGAGCTGAAAGC GCTCGACCATATTACCGACCATGTTGAGCTGTGGACGTGCGACCTTGCGC AGACACACGTTCATGCTGCCGTTCATCTTTTGGGGCATGGACTCTTTGGG AGTCTACACGCGGTGTAACTCAGGAATGAGATCTTAAATGTATTCAGTTT ACATGTGTTTGTGCCCCATGTAACAGTTCCATTGGGATAAAAGCCTTTTT GTGTGTTCTTGCCTTTGTTGCCTTGGTTTGTTTGCATATCTAACTCACCT TCAAATATTACAATTTTCCTTTCCATGTTGGTGTGGACCATTCAATACAT ATAGTGGGTGAGTCCTAAATGACCCATCTTTAGTATTTCACAACTGCGCC AAATGATAATCTAATTCTATAACTTCATCTTTTATTATACCAATGGCGAA ATGGAACCAAAGGTGGCAATTAATTTATCTCAAATTTATATTGATGATAG GGGCTGGTGTTGTAGCTTAATTGCTTGTGAAAGAGTTGGTGATGGCATTA GCATTTCTTTCTTAATGACACTGAATTAAAAATCTAGCTTCGTCCATTTC ATTATAATTACTAATGAAACTAATCAGTATGGCACCCAGGCTTAATACTT CCCACTAAGGGCGGGTTCATACTTGTGCGTATATCAAGTTAGTACGAGTT CTGTATTGACATTTTCTATTTATGTAAACTTTGCGTGGAAGAAGCTGTTT TTTACTTTGACCCATTGTTGTGCAGCCTGGTTATCGAACCCAAAAAACGA CTTCTTCGGCAGCAAACGGAACTCTTGATATGCACACAAGTCTGAAACCC CACTGACGTCAGTAACTTAGATGTGTCCTGTTGGTAAACCTGTGCATCTG TGTGGGTCCTACAGGTACACTTCCCTGGGGAACATGGTCAACACCAAGCA GAACCCAGACCTGAAGTACGTGGATGAGTTCGGTGTGACGAGGTACAAGC CTGCGTACATGCTTGAAGACGAGACGGGGGAGAGAGATGGCAGGCACTCC TAACTCATTCATTCTTCATCAGTGC

Coding sequence (CDS) from alignment at Sc0000078:1045584..1051958-

>Blg00431.1 ID=Blg00431.1|Name=Blg00431.1|organism=Branchiostoma lanceolatum|type=CDS|length=1593bp|location=Sequence derived from alignment at Sc0000078:1045584..1051958- (Branchiostoma lanceolatum)
ATGTCCAACCTTCTCCCGCTGGTGTCCGGGCGCGCCTTGTTCCGTATCGG
AGTCGTCTGGAGTCACCTTCGCACGAGTTCTGTCGTCATGGCGGCCCCCA
CGAACAGCCTGGTCCGGCACCACACCACGGCCGGAGTCATTATCATCGGG
GACGAGATCCTGAAGGGATACACACAGGACACCAACACCTACTTCATCTG
CAGAAAACTCCACTCTCTGGGTGTAAAAGTAGAGCGTGTGTCCGTAATCG
GAGACGACCTCCCTACCATAGCCGATGAGGTGGCACAGTTCTCCAAACGC
TACACCTATGTCCTGACGGCCGGAGGGATAGGTCCCACACACGATGACCT
CACCTTCCAAGGGGTTGCTGACGCCTTTGGTGAGAAGCTTGAGCCCAACC
CTGAACTTGTAGAACTTTGTCAGAAGTACCTCGGTGCAGATGCCAGCGAC
ATGTCCTCACCGCGTATGAAGATGGCTCTCGTACCGGAGAGCGCGAAACT
GCTCTTTGGCTACGACAATAAAACGAAGCAAAAAGCCCGCTTTCCCATCG
TCAGTGTATGCAACGTTTTCGTTTTTCCCGGCGTCCCAGCCCTGATGGAG
AAAGCCCTGACCATGTTGGAAGATGTGTTTTCTAACAAAGATGTCACCTT
TCATTTCAAGGAGGTTTATGTCAGTGCAGATGAGACATCCATTGCACCAT
ACCTGAATATCGTTGATGCCAAACACCATAGTAAGGTACAACTGGGGTCC
TATCCGGACTGGTACAATAACTACTACCGTGTCAAGCTGACTCTAGAGTC
GGAATCAGAAGACGACTTGAAGGAAGCTCACCAACATCTGCTCAGTCTAC
TGCCCCAAGATAAAGTGGTGGACTATGTAGAGAGAGATCCTGTAGGACAG
GCGGCACAAGAGGTGTATGGTCTTGCAGACAAAGACAGCGATCCCTTTGG
CATCAAGGTCAAGGCAGCTTTATCAGTAGTCGAAGAGTGTCTGGAGAAGT
ATGAGGTTCCAGAGCTGTGTGTGAGCTTCAACGGAGGAAAGGACTGCACA
GCACTCCTGCATCTTGTACATGCTGCTATAGCAAAGAAGTACCCAGTCGG
TCGGCCACAGCTACAGGTGCTGTACATACAGCGACCTTCACCCTTTCCAG
AGACAGAGGATTTCATTAGCAAGACTGCAGAAAGGTACAACCTTAAGATG
CACACCATGTCGGGAGACTACAAGGAAGCCCTGCAGGAGTTGAAGAGGAC
CCAGCCCCAGATCCAGGCTGTGTTAATGGGACAGCGCAGGGGAGACCCCT
ATGTGTCACGCACCAACATGGCAGCCTTCTGTATGACTGACTCAGGTTGG
CCCCAGTACATGAGGGTTAACCCCATGCTGGAGTTCACATTCCATGATGT
ATGGGGGTTCCTGAGATCCCTGTACCTGCCATACTGTATACTGTATGACA
GAGGGTACACTTCCCTGGGGAACATGGTCAACACCAAGCAGAACCCAGAC
CTGAAGTACGTGGATGAGTTCGGTGTGACGAGGTACAAGCCTGCGTACAT
GCTTGAAGACGAGACGGGGGAGAGAGATGGCAGGCACTCCTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00431.1-exon-Sc0000078-1570713199:1051447..1051958Blg00431.1-exon-Sc0000078-1570713199:1051447..1051958Branchiostoma lanceolatumexon
Blg00431.1-exon-Sc0000078-1570713199:1049660..1050414Blg00431.1-exon-Sc0000078-1570713199:1049660..1050414Branchiostoma lanceolatumexon
Blg00431.1-exon-Sc0000078-1570713199:1049003..1049129Blg00431.1-exon-Sc0000078-1570713199:1049003..1049129Branchiostoma lanceolatumexon
Blg00431.1-exon-Sc0000078-1570713199:1048659..1048757Blg00431.1-exon-Sc0000078-1570713199:1048659..1048757Branchiostoma lanceolatumexon
Blg00431.1-exon-Sc0000078-1570713199:1047826..1048021Blg00431.1-exon-Sc0000078-1570713199:1047826..1048021Branchiostoma lanceolatumexon
Blg00431.1-exon-Sc0000078-1570713199:1047020..1047093Blg00431.1-exon-Sc0000078-1570713199:1047020..1047093Branchiostoma lanceolatumexon
Blg00431.1-exon-Sc0000078-1570713199:1045584..1045744Blg00431.1-exon-Sc0000078-1570713199:1045584..1045744Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00431.1Blg00431.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:1045584..1051958 -
Properties
Property NameValue
GeneIDBlg00431