Blg00420.0 (mRNA) - B. lanceolatum

Overview
NameBlg00420.0
Unique NameBlg00420.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:302933..306762+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00420.0 ID=Blg00420.0|Name=Blg00420.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3830bp|location=Sequence derived from alignment at Sc0000078:302933..306762+ (Branchiostoma lanceolatum)
ATGAAAACGGAACGGTGTGATTTCGTCCGGCGCCGAGCCACGCCGCCAAG CTCTGTGCGACCGCATCGAAAGGTATGAGTCAGTGCAGCAGAACGCACAG CGTCCAATAAAGGTTTGAGATTCNTCATGACAATAAAAAGAAAATAAGAA TATTAATTTTCATCAATAACTAGAGCATTTGTAAATGTTCATACACAAAA GTATCGTGTTTTAGAAAGGTCAGCGGTACGCCAAATCCGTGCCGCGCCAA ATCCAAGATGTCGTCGGGACCAAGGAACAACAATTCTCGCCCGATGTTTT GCCCGCCGCGAAGTCATTTTTCGGCAGAATTTAGTAAGGCACAGACATAT TTTTGTTGAAAATACAAGAAATAGATAGTTATTTCTGTGAAATCTGACTT TTTGACGCCATTGACTACGTATTCGTTTTGAAAATTGAGTTTACACCGAA CTGAGTTTGCGGTTAACTATAAGATGCACAACAACCTCACAAACATTTGT CTTTAGAGTAGAGTAGAGTAGAATTTTCGGTCAGGTAGGACTGTTCCTTT ACAGTGTTTATAGGGGGAACGTTTTATCAAAACACTTCATGGAGGAATCG ATGCTATAACATTGCTATTCCATATATTTTTGTCCTTATTTTTGTCCTTC AAAGTCTTGAAAACATTTCCGTGAAATCCGACAGCAAAATGATCCGATGT CACCACACGCTTGAAAATTAGGCGGCCGCCATGGGCAGGGATTGTGCTCT GTGTGGTCCCAATTCGTGGCGGTCGCGGTCGCGTTGGACGGGTGGTCGCC TTGGGCAGGCAGCTTAATGCTTGTGCCTATGGGGACAATTTTCGGGACCG AGAAAAAGCGGTCGCCATGGCCAGGTGGTCGCGTTGAAAAGGTGGTCACC TAGGCAGGTTTGACTGTACATGATAGCAGCTTTGTAGTAGAAGTTTGAAC ATAATATACTACATGTACTATGTATTGTTTTCCAGGGTTTGGATACAGAC ATGTTTGGGGAGATCCTGAGTTACATCTACTCAGGAACCCTCCATGTGTC CCTGGACAAAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAACTGG ACTATGTAAGAGACACCTGCAGCAGCTACATGGCCATGAATATGGAGCGC TCCACCTGTATGGACCTGTACAAGTTTGCTGGTGTCTTCTCCCTGGAGAT TGTCAGGGCAGTCTGTCTGCCGCATATCACCAGAAACTTTACTGAGGTTA GTGTTCATTATGGGTAAGGCAGTTGTGCCGAATAGGAATCTGCTACTGCA TTCATATTACACATACTGCAATGGAGATCTACTGTCAGGCATCTACTGTC TCCGCCTCGAAACTTTTTGTATTTCGCTAAGCTGGGATAAGCTGGGCAAC AATAATGTAAATGGATTTTTTGTGTGATCTTTATTTCGCGCTAAGGCGAA AATGAAGTGTTCAGCCCTGGTTTTAATTTCGCGGCAGTGCTTAAGTCACA TAGGGCTGCAGTATCAAACAAAAATGTTTGAAGTGGTTTTAAGTTTGCAG TGAAACGGTAGCCGCAAAAGCCGCGAACATAAAACTACCGCCAACATTTC TGCTTTCAGTATTTGGAACCCTGCTTTTGCTGAAGGGCAGTTACACCAGA TATACAGACACGGGGTCATGTACGCAATCATTACCATCTTCTATGTCAAA ACAAGATTAAACACATTTATGCAGTATCTTAGAACAAGTACATGACTTGT ACTCTTCACCTTCACAGGTTGCTCCAGCGAGGAGTTCTGCAGCCTGAGCG TGAATCAGCTGACTGAGATTATCAGCCACGATGAGCTGGATGTTGAAGAG GGGACAACAGTGTGGGAGGCAGTGGTGAGATGGGTGCAGCACAGCAGGGA GGACAGGTGGGCATTAGTGTTTTGTTGGTTCAGTTAAATTATCATATTGT AGTCGGTACTTGAACTAAGTTTGATGTATTAAGAAACTGATGTGTTGCCA AGAAATCAGCTGAATCAACCTTTACCTTGTACCTTACAGACAGCACCACC TACCCAGCATCCTCCCTCATATCCGCTTCAACCTGATGACCTCAGACGAC ACGGCAGCCATCTTGGAACACCCCCTGGTCAGGGAGGGTCCTGGGAGTCC TGAGGTCATCAGGAAAGTGGTACAGAAAGGAAACTCAAACCTGAAGCCCA GGCTTGGGATGACCATGGAGATGGTTCTACTTTTCACTACAGAGTATGTA TATACTAGTACTTCTTTTTTGACTTGCTGAAAGTCAGGAACTATTCTTGT ACAATATCTATTACCCCGTTTGCAAAACACATACCCACAGTCTTAATTTT TTTATATATATACTCGTAACCTTATTCCAGCTTAAACTGAAGCACATTTT TAAGGGGCTACAAAATAAGATTTAATAGATGACAACAATGCCTGCAGAGA TTTTAAAAAGTATGAATTTTCAGTTTTATAGAGTTTGTGGTGTACTTTAT CCAGGGAAGATGAGCTCCTCTACATGAATCCTCAGGAAGGGAAGTACATC AGCTGCACTTGTGACGACTTTCCTGATGCCACAGCCTTGACAGTCACCAG CGATAATCAGATGTACATACTGGAGAATGAGCGAGAGGATTGTAATAAGT TGTCCATGTTTAAGTACAACCATGCAGAGAATATGTGGAAACATGCTGGT ATGTCCTCAGTATCTGTATCTGACGGGAAAGACTTCCTTGTTGAAGTTGA TCAGATTTTATATTGCTGTCCTGCTGATCTAAGAGAACACAGTGCATTAG TGCGGATGAGTAAGTACAACCGGCACACGGACCAGTGGCAGGAGTGTTCA CAGCTACAACTTTATGGAACTTGGCATTTCTGTGCTGCATTGTCCTGCAG TTCGCACCTCTATCTCATCATGGACTCAGCAATGCATCGTTATGACCCGA GCAAGGACTGTTGGTGCGAGCGGACCCCACCGAATCTGAAAGGTCGTTAC TCAACTTTCACAACAGTTGCCATGGGAAAAGAGATTTTCTGCACAGATTG GGATTTCAGTCAGACTACGGTTTACGATACAGAGTCAGACTGCTGGCAGA AACTGCAAGTATGGCCGGACCCAGGAAACCTAAGTGCCAGTCACACTCCG AGTCTTTTTGTACTGGAGAACCAACTTCATATATTGTTAGAAGTCTATGA CAAAGTTAAAGGAGGGCCATCAACAGGCTATCTGGTATATGTGTATGACA GGTCTGCTGATGCCTGGAGAGACTTGAAGGCCATTATACCCAAATACGAA TATATAGCACGTAGTCCGCTTTGCCCTGTGGTACGTATGTACCTACCTTA TCTTCAGGGGGCACAAATACACATCACTTCTTACGGTTGTCATCGTTAAT GTGTAGGAAAAGGACACACGGACCATGTAACCCGCAGGACTGTTTAATGA CATTGTTTCTTAGATATCGGCTTTTACAGAATACCCTTACAACGGGAGAG GCTTTGTTTACAGAATACCCTTACAATGGGAGAGGCTTTGTTTACAGAAT ACCCTTACAATGGGAGAGGCTTTGTAGTACAGTTTTTACTTCAGCTTTGA AGTAGCACTTTTGTCTTTAACAACCCTCGATTCTTTCTTATGACATCGAT GAATCATGGGGTGATGTCATTTCCCCACCCCCCGAGAGACATATTTCCAT AACAGACCTGGTGCCCTACGTGTCTTAAACTCCAACAGCAGTCAGAAACA AGACATCATGCTCTTTATGACATATTAACAATTATTGTACATGTGTTTAG ATCCTGTGTATCTTTCCTGCAGTGTTATGA

Coding sequence (CDS) from alignment at Sc0000078:302933..306762+

>Blg00420.0 ID=Blg00420.0|Name=Blg00420.0|organism=Branchiostoma lanceolatum|type=CDS|length=813bp|location=Sequence derived from alignment at Sc0000078:302933..306762+ (Branchiostoma lanceolatum)
ATGAAAACGGAACGGTGTGATTTCGTCCGGCGCCGAGCCACGCCGCCAAG
CTCTGTGCGACCGCATCGAAAGGGTTTGGATACAGACATGTTTGGGGAGA
TCCTGAGTTACATCTACTCAGGAACCCTCCATGTGTCCCTGGACAAAGTG
CAGCCCCTGTACCAGGCAGCCGACCTCCTCCAACTGGACTATGTAAGAGA
CACCTGCAGCAGCTACATGGCCATGAATATGGAGCGCTCCACCTGTATGG
ACCTGTACAAGTTTGCTGGTTGCTCCAGCGAGGAGTTCTGCAGCCTGAGC
GTGAATCAGCTGACTGAGATTATCAGCCACGATGAGCTGGATGTTGAAGA
GGGGACAACAGTGTGGGAGGCAGTGGTGAGATGGGTGCAGCACAGCAGGG
AGGACAGACAGCACCACCTACCCAGCATCCTCCCTCATATCCGCTTCAAC
CTGATGACCTCAGACGACACGGCAGCCATCTTGGAACACCCCCTGGTCAG
GGAGGGTCCTGGGAGTCCTGAGGTCATCAGGAAAGTGGTACAGAAAGGAA
ACTCAAACCTGAAGCCCAGGCTTGGGATGACCATGGAGATGGTTCTACTT
TTCACTACAGAGGAAGATGAGCTCCTCTACATGAATCCTCAGGAAGGGAA
GTACATCAGCTGCACTTGTGACGACTTTCCTGATGCCACAGCCTTGACAG
TCACCAGCGATAATCAGATGTACATACTGGAGAATGAGCGAGAGGATTGT
AATAAGTTGTCCATGTTTAAGTACAACCATGCAGAGAATATGTGGAAACA
TGCTGTGTTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00420.0Blg00420.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00420.0-exon-Sc0000078-1570713199:302933..303004Blg00420.0-exon-Sc0000078-1570713199:302933..303004Branchiostoma lanceolatumexon
Blg00420.0-exon-Sc0000078-1570713199:303918..304113Blg00420.0-exon-Sc0000078-1570713199:303918..304113Branchiostoma lanceolatumexon
Blg00420.0-exon-Sc0000078-1570713199:304700..304838Blg00420.0-exon-Sc0000078-1570713199:304700..304838Branchiostoma lanceolatumexon
Blg00420.0-exon-Sc0000078-1570713199:304972..305175Blg00420.0-exon-Sc0000078-1570713199:304972..305175Branchiostoma lanceolatumexon
Blg00420.0-exon-Sc0000078-1570713199:305437..305630Blg00420.0-exon-Sc0000078-1570713199:305437..305630Branchiostoma lanceolatumexon
Blg00420.0-exon-Sc0000078-1570713199:306755..306762Blg00420.0-exon-Sc0000078-1570713199:306755..306762Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:302933..306762 +
Properties
Property NameValue
GeneIDBlg00420