Blg00376.3 (mRNA) - B. lanceolatum

Overview
NameBlg00376.3
Unique NameBlg00376.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at xpSc0040258:1..4637-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00376.3 ID=Blg00376.3|Name=Blg00376.3|organism=Branchiostoma lanceolatum|type=mRNA|length=4637bp|location=Sequence derived from alignment at xpSc0040258:1..4637- (Branchiostoma lanceolatum)
CAGAATGGAGATGGTGAGCCCCTGTCAAAGAAGATCAAGACAGAAGATAT AAAAGGTAAAGCTGTCTTGCTGTGTAATGTTTTTACTTACTCAATGCTTC TTATCTTGGCCATGCATGTCTTGCGCTCATTGCACCAAGTCTGTACCAGT GCTAACCAAGTAGAGATACCATTGTATATGCTAGACCAGATAAGGAAGGG AGGACATCAACCAAAAGATTTAAACCTTTTTGCCAGGATTAGGTGAACTT TCTTCTATGTCAATATTTTGGCTTTTCCCAACCAAAATGTTCCATGCTTT ATCTTCTCTCCTTATAAGGTGTTTTACAGGAGGAACATGAACAACTTTAA ACCTGACGAGGGAAAGCCATTGAAACCTGAAGGATTTGTCGGGTTGTTCG CAGGTTTGGTTGTTGACCCATTTTGGCTTGTTGGAAGTCCTTGTTCCAAC CTCAGCAGCGGGCTCATGTTTCTTGGAATGTGTGAAATGGGATGACTGGC TGTAGCATACCTAACTCACTTCACAAGGTAGTGTGTGGATCTCCTCTGTG TTGGCAGTTCGTAGCAGCTTGTTTGCACTGTTTCTATTTGTGACCTCTAT CCATGGTCTGCTGTGTCATCTTATCAATGTGGATACATCTTGCTCGGAGA TTTTTTTTCTCTGTTTTTGAGTTTCTGTAGAGCGTACGGTCGGAGCCATG TTGTCGTGGGGTTTTCCGACACCAAGGCTTCTCGAAGACTTGCTGAAAGG TAACAGTAGTGAACTGTAATAGAGCATGTGTGCCTCCAAAAGTGATTACA TCATAATGCTGTGAAGAAACTGTCATGGTGTCATGGCTATGCCAGGGGTT TTGTGTGGTTCACTCTAGAACCCATAGGGTAGAGCCCTTATTGTGTTAGG CCATGACAGTTTCTCCTATATTGGATAGTCTAAATAGTGCTAACTGCTAT AGGACAGTGCAACTTATGCTCGTTAAGCCAGTGCCCAATAGAATGGCCCA CACACTTAGTNAGATTGTGGTTAGTGTAATGCTGAAAATTCACTTTTGTT TAAAAAATAATAATACCACCTATTAATTTAATGTTACTAGTATTTTGTCA GAAATAAGACATTCACATACGTAGGTTCAAGCTAACTAACAAGTGACTTT GAAAAGAAGTAGACTTTGCCATTTGGTTAACTTTGCACTTTCATCATCCC ACAGAATGGAGATGGTGAGCCCCTGTCAAAGAAGATCAAGACAGAAGATA TAAAAGGTAAAGCTGTCTTGCTGTGTAATGTTTTTACTTACTCAATGCTT CTTATCTTGGCCATGCATGTCTTGCGCTCATTGCACCAAGTCTGTACCAG TGCTAACCAAGTAGAGATACCATTGTATATGCTAGACCAGATAAGGAAGG GAGGACATCAACCAAAAGATTTAAACCTTTTTGCCAGGATTAGGTGAACT TTCTTCTATGTCAATATTTTGGCTTTTCCCAACCAAAATGTTCCATGCTT TATCTTCTCTCCTTATAAGGTTTTTTACAGGAGGAACATGAACAACTTTA AACCTGAAGAGGGAAAGCCATTGAAACCTGAAGGATTTGTCAGGTTGTTC GCAGGTTTGGTTGTTGACCCATTTTGGCTTGTTGGAAGTCCTTGTTCCAA CCTCAGCAGCGGGCTCATGTTTCTTGGAATGTGTGAAATGGGATGACTGG CTGTAGCATACCTAACTCACTTCACAAGGTAGTGTGTGGATCTCCTCTGT GTTGGCAGTTCGTAGCAGCTTGTTTGCACTGTTTCTATTTGTGACCTCTA TCCATGGTCTGCTGTGTCATCTTATCAATGTGGATACATCTTGCTCGGAG ATTTTTTTTCTCTGTTTTTGAGTTTCTGTAGAGCGTACGGTCGGAGCCAT GTTGTCGTGGGGTTTTCCGACACCAAGGCTTCTCGAAGACTTGCTGAAAG GTAACAGTAGTGAACTGTAATAGAGCATGTGTGCCTCCAAAAGTGATTAC ATCATAATGCTGTGAAGAAACTGTCATGGTGTCATGGCTATGCCAGGGGT TTTGTGTGGTTCACTCTAGAACCCATAGGGTAGAGCCCTTATTGTGTTAG GCCATGACAGTTTCTCCTATATTGGATAGTCTAAATAGTGCTAACTGCTA TAGGACAGTGCAACTTATGCTCGTTAAGCCAGTGCCCAATAGAATGGCCC ACACACTTAGTATAGATGGGGCCCTGGCTTCTCGAGTGTAAGCAGGGTGG TATAGAGTACTGTCTAGGTTGTGCAGTTTTTATGTTTTCCAGGTTATATG CACTAAGGGTACTTAGGTATCTCCATGTACTAACCATGTTTTTCTTCTTT CCAGTTCTTTCTTGTTTCTCCTGCAGGTGCATGCACAACTCAAGGAATTC TAGGTTCCTCAGTTGTCAGAGTCAGCAAGCATAGTACCTGGGACAAGTTT ATGGTTGATGCTATATAGCATCTCTGCTTATATTAGTATTCTTCCTTACT GTGTTGATACTATACTATAGGCTAAAGTGCTGTTGTTGGGTGAATGCTGT CAGTGCTTGAGTGATTGTTGTTTGGTTCCAAGAAACATGAAGCTGAAGCT TGCAGGTCCTCCCTTCCACAGGATTGTTAGTAGTGGGCAGTCAGCCTGCA TGAACCTGCCATGTTAACAGGGCTTTTTTGTTTCTCTTTCTTCTTTTTCT CTTGTTTGTTGCCACAAAGATCAGATGGTAGAACGAACGCGAGGTTTGAC GTATGACGTTGGGTGACGCCCGCCAATGCGGCGAACAGCGGGCAACACAA CAGCTCCAATCCACCGCCATGCCACTCCACATCTTAGGTTCCCTGTCATC GCCATTTTCAGACTGTAGTCCATTTTTATCGTTACCTAGCACTGTTCGTG TCTAGACAAACCATAACTGTTGACAGGGATAAAAGATATGTTCTGTTTTT ATTGAGTCCTAAAGCTGAGGCCACTATAGATGCGTTATTTGCTTGTCATT TTAAATTATGGGAGCCATCATTTCAAGTAAGGGCGAAGAATTGATAAGTC CATCTACAGCAAACCCCAACCCGTGATTCGTGCTCAACTTGTTAGATATT TGGGGAGGGACAGTACTTTTCTTTGGGGAGTGAAGAAGTCTCAAAATAGA AGTTTGCATGTCAATGGGGAATCAAGGGCTCGCTTGAAATCTGCCATACT ATGAATAGCTGTGACATGGCTTATTTGTGTAAATGTTGAGGGGAGTGGGA GGTGGCATAGAGCCCTTTGCGACCACTAACTGATGCATTTTGTCTCCCCT TCCTGTCTTTTTCTCTTGTGTATTTTTGTATGATGTAGTAATAACCCAGC AGGAGTGACACCATGTGGACCGGATGGCGCGCTCATGCTTCATATGGCGC ATCCGCCCTTTATGTTGGCCGCTATGGCCGCCGGGACCGCGATGGGTAAC ACAACGGAGAAGAAGGTTTTGTGTTAGCTCTTCCCAGTGTCAAAGTGTCT CTTGTCCTCTACATACAGCATATTCCACACACACATTGCCAGGCAAAGTA AACTAAATAAAACCATCTGAAATCAATTTCTCATAGGCAAAGCTTTTCAT TCTTGAGCTCTCTTCTATCTCCGACTTTGTTTTTTTGTTGCCTTTTAAAG ATTTTGTGGAAGTTTGACTCAGCTTCACATTTCTTTAACTTCAATATTAA AGGTTAACTCTGAAGAGAGTAATAGACTGTTTGTGTTCAAATCTCCAATT ACACAAAATAATGGGGACACGCACACGTTCAAACACATAGATCTGTGTCT GCCAATCAAAATAACACTCTCTCCCTGTACTTGAAAAGGCAGACACATTT AGGTGGTAATTTAAGGTACTAAGGAGACTTCTTCATGGTTTCAGGAGATG AAGGAAAGGGAAAGGCCCCTGGGCTACCACCACTGACCAAAGACCAACAA GAGGCAGTGACAAAGGCAAAGAAATATGCTATGGAGCAGAGCATCAAAAG TGTGCTAGTGAAACAGACCATTGCACACCAGCAGCAGGTATAGTAACATC TCTGTTGTTCTGAAAGTGGTGGTTAAATGGTGCATTCTGTTTTCAGTTGA TAAAAGACAAGTAGATTATTGAGTAAGTAAGGTCATTTGTTAGGTTCTTA CGTCAATATAGAAATATGTAACAGGCATTGAAAGGATCATGATCAGGCTA ATAGTGATATACCGAAACAATATAACACCAGTCTTTACATATACAGTCTG AGTCACAATGTTTTCCACTACAACACATATTATTTGCTTGTGGAAACTTT TTCTGTTCTGTGTATAGAAGGACATTTCTTAATTCTAGTCTTTATTGTTC TTCAGCAAATGACCAACTTACAGATTGCAGCCCAGAGACAAAGAGCCTTG GCCCTTATGTGCAGGTCAGTACATGGGTTAAACAGGTCTGAAAAGACTCT CATTGTTAATGACATTTGTCAATGTCTTATTGTCTGTGATATTTTGTCAC CACCTGAAGACTATCTTTTCCCCTCCACATGTCTAATTGTGTTCAACCTA ACATGTTTTTATAGAATCTATGTTGGATCCATCTACTACGAGTTGCGGGA GGATACTCTGAAGCAGGCCTTTAGCCCATTTGGTCCC

Coding sequence (CDS) from alignment at xpSc0040258:1..4637-

>Blg00376.3 ID=Blg00376.3|Name=Blg00376.3|organism=Branchiostoma lanceolatum|type=CDS|length=285bp|location=Sequence derived from alignment at xpSc0040258:1..4637- (Branchiostoma lanceolatum)
ATGGTTTCAGGAGATGAAGGAAAGGGAAAGGCCCCTGGGCTACCACCACT
GACCAAAGACCAACAAGAGGCAGTGACAAAGGCAAAGAAATATGCTATGG
AGCAGAGCATCAAAAGTGTGCTAGTGAAACAGACCATTGCACACCAGCAG
CAGCAAATGACCAACTTACAGATTGCAGCCCAGAGACAAAGAGCCTTGGC
CCTTATGTGCAGAATCTATGTTGGATCCATCTACTACGAGTTGCGGGAGG
ATACTCTGAAGCAGGCCTTTAGCCCATTTGGTCCC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00376.3Blg00376.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00376.3-exon-xpSc0040258-1570713199:4583..4637Blg00376.3-exon-xpSc0040258-1570713199:4583..4637Branchiostoma lanceolatumexon
Blg00376.3-exon-xpSc0040258-1570713199:601..1913Blg00376.3-exon-xpSc0040258-1570713199:601..1913Branchiostoma lanceolatumexon
Blg00376.3-exon-xpSc0040258-1570713199:224..282Blg00376.3-exon-xpSc0040258-1570713199:224..282Branchiostoma lanceolatumexon
Blg00376.3-exon-xpSc0040258-1570713199:1..73Blg00376.3-exon-xpSc0040258-1570713199:1..73Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0040258genomexpSc0040258:1..4637 -
Properties
Property NameValue
GeneIDBlg00376