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Blg00358.1 (mRNA) - B. lanceolatum

Overview
NameBlg00358.1
Unique NameBlg00358.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:1128939..1134475-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00358.1 ID=Blg00358.1|Name=Blg00358.1|organism=Branchiostoma lanceolatum|type=mRNA|length=5537bp|location=Sequence derived from alignment at Sc0000086:1128939..1134475- (Branchiostoma lanceolatum)
CTCCGTATTGTCGCACACCTGTCTGTTGACGTCGAATACGTGAGTGTTCT GGCGACACTTACAAGCACACTGCTCCACACCGCCGTCGAACGTGAACTTC CCCACAAAGTTTGCTTCCTTCGCCGAGCAGTTGTCGTGACAGTAGCGCTG GTTATTCGATTCGACGTTCTGGCAAGGGTTGGTGAATACGTCTCCATATT CCTCTCTTTTCACATGGAATTGTTGATCGTAGTTGCAATCCAAAGTAGTG GCTGATGCCCTTAGAGCCAAATATAGAAAAAGCAGCGAGGAAGAAAGAGA TGTTTTTCGAGGTGAATTTTCAGGTACAGCTGCCATCTTTGTCCTCACCG GTTTTCTTATCTTACTTGTTTCACCGGTGTTGTCTGCACCAATGAACCGT AGAATGACGTCATTTCCGGTCATTGCAACTCTGTTCGAAAGGTGTAATTT TACATGTTGACGTCGAAGCTTGCGGCGTAGCAAACGAATTGAGTTTTGTA TTTACCAATACTGTTAACTGCATTGCGGGCATACATTGTACGATTAATAT TGCTTTTTCGGCCATGTGCTTTTAGGTGTCTAGAATGACCCTGTGTAACG CTCGGTGGTTTTCAAGGCCACAGGTGTCACACTACTCTTTACTACCACAC ACAAACATCCTGGGGAAATACTTGGGGCTTATTGAAGTGCAACGTTTTCA GCTTAGTAATGTGCTGTGACAATTGATTTATCTAGATTACGTACAAGACT CCCAATTGTATTTGTCATCAGGCCAAGAAGTAACGAAACAAACAACAACA GTTATATTTTGTACTAGGGCAGACGTAAACGTGTATCGTTACCTAACGGA AAGTCTACCTGTGAGAATGCAGCACTGACGAAATAGACCTAATCTATACA TGTTGTTGTGGTTCAAGATCGTAACGTTTTCTGATAGCCAAACTTCACTG ACAGCAGAAAACATTAACAATATTCCGCTAAACATCTGCTTGGAGATAAT GAACGCCCCAAAATAAGTCAAACCACTCCATTCGTTGTAGCCTGGCCAAT TGCAATCAGACCGATTCTCATTAAACAAAAAACACTTGTGAATTAACTGG GTCCTTACTGTAGGTTAGGTCGGCTTCATTCAATAAATAGTAAGTGACAT ACGAGTAGACGGCCGTTTTTGCTTTGTTTGAAGTACCGGCTTGCGCAGGT AATACGGAATGACCCTTGGCCTATTTACTTTGCCTCATGAATATTCATGA CGTAGTGCCTAACCACCTGTTAACCTTTGAAATAGGTGGGATTCCCCGCC GTGTCCTGATTCTGGTTCAAACTGGCGAAAACCAGTACTTCTTGCACCTT AGACAAATAGTTTATAGATACATACTCATAATGTAGCATGGAAATGTCAT AAAACGTTTCAAATGTTCGAATTTTGCAACAGTTCGACACCGAAGTTGAT GCGATCCTTTTTTCCGATACAAGTGTAACGTTATGTTTAGAAGGCTCGAA CTTGCACGCTATAACGTTAGCCTCCTGTGCAGGCCTCCTATAACGCGCGA CATAGATATTGGGGGAGGGGGGAGCTCTTATGCCGGCAAGGACCCCTCGG CTATACAACTCCCTCGGCTGCACAACTCCCTTGCCGGCATAAGAGCTCCC CACTCCCCCAATATCTATGTCGCGCGTTATAGGAGGCCTGCACAGGAGGC TACTATAACGTTACAAATGTCACGTAAGGTACACCCAGGTGAATCCCCGA AATTGTGGGATTCCCCTTTCTCTGGATAACATAGCGATCCCGTGATTGGC AACGTTGCATTTCTATATCAAAATTACAAAAATCCAAACTAAACTTTGAA TGTGCAATTCGCTTTTAACCCTTGAGCACCGAAGTACCAAATTTTCAACC CCAAACGTTTGGCATTTTCTCGAAAATTGGCACAAGGGTATGGTAACATG ACAAGCAGTACAATAACGTAAACAATACTGTCTTTTGTTCGGTAAGGTGA TTCCCCGGAGTCTGGTACTTTCCACTTAGTCACAGGACCAGTGAAACTAG TACGCAGCAAAATCATTTGGTAACAGCACACTGAGAGAGTATACAGACCA AGCATGGCGCGTTTTCTCGGTATGAGTCATTTCTCGATTGTCCTCTGTTG TGTAGTTTTGGTCATTGTTGGGATTGTAGAGGGGACGAGCTCTTCAGAAG AACAAGCGGATAGAAGATGCGACGTGGACAAGTATTATGACGAGTTTACG AGGAACTGCGAGGCTTGTAGCCTGTTGTGCGAGGTGGCACGGGATACCAT GAAAGAATGCGAGCAGAAGTGTGGAGGTAAGAAAAAACAGGGCAAGGTAT TTCTCAGCTGTCTGTTCGTGTTTCAGACCGTAAAAATCCTCGAGTCATTC TAAATTCATATTTTCTGGAATTGTAATTAAATTCCATGGAAACGGGCGTG GTCACTTGATGTTTGATTCCATGATGTATTGATATTTGATACTCCCAAAA TTCAAGAAAATATGCAATTGCATGTAGAAGATTGGAATGAATGTCAACCA AACAATAATCGGTTCCATTAATCCATCTATGGTAATTTTCTTTTTACTGC TGGAATTTCCCTCACGTCATTTTGGGGGGGCTTTCCCTTGAGGACTTTAC CCCCGGACTCCCCCTACTGTTGAAATTGATATTAATGACGGGTGGGTTTG ACTCCTGGCCAAGTCAAATAGGGCTCTGCTTGAACACGTATATAACACTG CAAGCCATTTTATAGGTATGGGAAATATAAGTCTTTATTATCTCCATGAA AAATGGGGATATAGTTTTGGGTGTGTCTGTGTGGGTGTTTGTTTGTCTGT CTGTCTGTTTGTGTTTCTGCACTACTGTAGTCAGCATAACTCAAGAACCT CTTGATAGATTATGATGATATTTGGTATGTGGGCAGGTGTTGTGAAGCCG AAGTTCAAGGTCGATTTTGGGCCCCCTGGTATGTGACCTTGGTACTGCAA CAGAACTTCCGTTTTTATCTTTTGACCTGGACGCGTGCTCTGGTCTTGAT TTTTGGATGACTGATAGCTTGTGATGTAATAAAAAAGTAATGTAGGTTTG GGCCCCCTAGCAGCTTGTTATTTTACTGCATTGGTGATTATGTAGTACTA GTAGTATCAGGTAAGTTTGCAAGTACATTTTGCTGTATCTCTCTAAGTTG AACCTTTTTCTGTTTGTGTTTGACAGACTACCTGGCCATTTTACAACGGC AGACGACAACACTCGTGTACAGGCTACGCCACGGTCATCACGGGGGTCAA GGTCACGGCACAGGGGAAGCAGTCCGGGTCGACAACGGTAGGTGCTTTAT TGTTGACCCTAACTTCACATAGTACAGGTGGGGAGGGGGCATAACGTCAA CGGTATCAGGACTTCACACGCCTCAGGAAGAAAAACGGTGCTATCGATGC CCCGTCAATAATGTCTTGAACACCTGGATATCTGAAGCATACCTCGGGGA TACTGCATTAATAGATCTCTATAAAATCACCGTTTCGTATGTGGTGGTCT TAGGGTAACTTTAAAAATTCTGAGGGTCGTCATGATATAAGAGTCGGGTT CATTTATGGTGACCGTTATTTGTCGTTTCCACCCAAACAGTTCAAATTGC AACCCAACTGAGTGCCATCAACGACAGCCTTTGGGGTATAATCTACGCCA TCTTAGCCCTGACGGCGGTAGCCACAGTTGTGGTGATCGGCGGATGTTTC TGCCTGCTACAAGCCAGAAGGAAGCGACTGGACGAGGAGAGTTACTACAG CCCGATCCCACAGCAACCTCCCCTTGCATTGCAAGTGGCACCGCCTGCAC AAGAAAATGTGCGAGACCACCCAGAAGGAGGCAAGTTTTTTTTTCGCTAA ATACTTATTGCAAGGGCAAGTGTCTTAGATGTCATCCTTGTCCCATTCCC AGTCTTACTGCTCCGTACGCGTCACCCCTCTTTGCTGCAGCCACGTAATC CTTACATAAGATTTTACACAATNATATAAGAGTCGGGTTCATTTATGGTG ACCGTTATTTGTCGTTTCCACCCAAACAGTTCAAATTGCAACCCAACTGA GTGCCATCAACGACAGCCTTTGGGGTATAATCTACGCCATCTTAGCCCTG ACGGCGGTAGCCACAGTTGTGGTGATCGGCGGATGTTTCTGCCTGCTACA AGCCAGAAGGAAGCGACTGGACGAGGAGAGTTACTACAGCCCGATCCCAC AGCAACCTCCCCTTGCATTGCAAGTGGCACCGCCTGCACGAGAAAATGTG CGAGACCACCCAGAAGGAGGCAAGTTTTTTTTTCGCTAAATACTTATTGC AAGGGCAAGTGTCTTAGATGTCATCCTTGTCCCATTCCCAGTCTTACTGC TCCGTACGCGTCACCCCACTTTGCTGCAGCCACGTAATCCTTACATAAGA TTTTACACAATATGAAAACACTGAAAAACGTCTGGCGAGATTGAACTAAC GGCAAGGAAAATAGTGGTGAATATGATAGTCGTCTCGTTTTCTTTTCTGA CTTCAAGTAAAACCATATCAATTAAATCCAGTTTGAATTCAAAAGCTACA TATCTACAATGTAAAATGACAACACGAGAACTAGATCTTTAATCAGATCA TACATTAATCATATGGACATACTACCCCTACGGCTACTCAGCTATGAGAC TGATGTGTGGATATGGATACAGTACCTAATGACTGTCCTATAACTAGTAT GTATGTTGCATCTTTGCATCTCGCAGGAGAAGAATGGGCGTGGACCAACC CCTCCCTCCCCGTGCAGAACGCTAGTCGCTGCCCCTCCCACAGCCGCCTG AATGTGGAAGACGCCTTGAGGAACCAGCAAGCTCATGACGAGGGACGCAG GAGTTCCTCAGAGTCTGATGTCTAAGAAGGAAATAACAAAAAATATCTAC GTTTTGCTGTGTATGAATGAATATGCGATCTGGCAGACTGTCCTTTGGCA AGACATTTGCGGTCATGTGTTGTGTTTATTTTGACATTAACGTTATATAT GTGCGATTCATATCAAGTACAATAACGTTATGACTTATGTATGTAGAATC CTTTGTACTCTTCAAATGAGAGATGTCTTATTTCATGTATAAAAGATTTC GATTATGATAGGAATATATATATATATATATACCTATTGGCTACATTATG TCTACATTACGTATTTTCTTCAGAATGTTTCAATATTAAGGCGCTAGCAT AATAAACTGTATCATTTGATGGGTAACTTTCCAGAAATGAAGATGTTCCT GTAAGTCGAATTGCTCTGTCCTTTTTTTAAGCATTTGGGGTTGTGAAAGA GAAGGTGTGTAAATAAAAGCTAACAAGTGGCATACAACGCGTGTCATTGC ACTTCAAAGATATTCGGCTAAACGTGAATGTCTTTCCTTACTACTCCTAT ACACGAACGGAAAAGTCATGTTGGTAAGTAGAGGAAAAACTGCAACCTAT TAGAATAATGCTTTTCTTCAATCAATTAAGGATCTGG

Coding sequence (CDS) from alignment at Sc0000086:1128939..1134475-

>Blg00358.1 ID=Blg00358.1|Name=Blg00358.1|organism=Branchiostoma lanceolatum|type=CDS|length=528bp|location=Sequence derived from alignment at Sc0000086:1128939..1134475- (Branchiostoma lanceolatum)
ATGAAAGAATGCGAGCAGAAGTGTGGAGACTACCTGGCCATTTTACAACG
GCAGACGACAACACTCGTGTACAGGCTACGCCACGGTCATCACGGGGGTC
AAGGTCACGGCACAGGGGAAGCAGTCCGGGTCGACAACGTTCAAATTGCA
ACCCAACTGAGTGCCATCAACGACAGCCTTTGGGGTATAATCTACGCCAT
CTTAGCCCTGACGGCGGTAGCCACAGTTGTGGTGATCGGCGGATGTTTCT
GCCTGCTACAAGCCAGAAGGAAGCGACTGGACGAGGAGAGTTACTACAGC
CCGATCCCACAGCAACCTCCCCTTGCATTGCAAGTGGCACCGCCTGCACG
AGAAAATGTGCGAGACCACCCAGAAGGAGGAGAAGAATGGGCGTGGACCA
ACCCCTCCCTCCCCGTGCAGAACGCTAGTCGCTGCCCCTCCCACAGCCGC
CTGAATGTGGAAGACGCCTTGAGGAACCAGCAAGCTCATGACGAGGGACG
CAGGAGTTCCTCAGAGTCTGATGTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00358.1Blg00358.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00358.1-exon-Sc0000086-1570713199:1134299..1134475Blg00358.1-exon-Sc0000086-1570713199:1134299..1134475Branchiostoma lanceolatumexon
Blg00358.1-exon-Sc0000086-1570713199:1132150..1132320Blg00358.1-exon-Sc0000086-1570713199:1132150..1132320Branchiostoma lanceolatumexon
Blg00358.1-exon-Sc0000086-1570713199:1131139..1131249Blg00358.1-exon-Sc0000086-1570713199:1131139..1131249Branchiostoma lanceolatumexon
Blg00358.1-exon-Sc0000086-1570713199:1130157..1130396Blg00358.1-exon-Sc0000086-1570713199:1130157..1130396Branchiostoma lanceolatumexon
Blg00358.1-exon-Sc0000086-1570713199:1128939..1129699Blg00358.1-exon-Sc0000086-1570713199:1128939..1129699Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:1128939..1134475 -
Properties
Property NameValue
GeneIDBlg00358