Blg00354.4 (mRNA) - B. lanceolatum

Overview
NameBlg00354.4
Unique NameBlg00354.4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:574401..579160+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00354.4 ID=Blg00354.4|Name=Blg00354.4|organism=Branchiostoma lanceolatum|type=mRNA|length=4760bp|location=Sequence derived from alignment at Sc0000086:574401..579160+ (Branchiostoma lanceolatum)
CGTCGCCCTAACATAAACACGGGAGGCTGACGTTTCTGTAAAATCGGATC ACTTCGCTATGCATGAAAACTAAAAGCACCACTTGGTTTGTTGTCTGTTT GTCCATTTGCATGCATGTCGGGTACAATCGCCTGTATGCATGACTGGTAC AGGCATTAGTAGTCTACACCAGACTACTAGCTGTAGAGTTGCTGAAAAAT ACACTGAGTAGCAAGTGGCCAAGAAGGGTGAGTAATTTTTCGGACTGAAG AGTTGCTAAGGTGGACCTCTGTGTCCTGCTAACTCTTCTGACAAATAAGT CACCATATTTTGCCAATGTCTCCTATTTTGTTGTAAAGCTAAGGAGTCTC GAGGAGACTATGTATTGATTTGTGCTAACTGAGCTGGACTGTTTCTATCG TGTAACACTGTAGCACTGAACAAGGCACGATCCTCTGGTTGCGCTCAAGA ATCATTTTCGCTGAGTATAGTCGACAGGTTATGCGTTGGCATGGCTTGCA ACGGTAGAAAAGTTAATGTACGCCACGGCTCTTTCAAAGACTATCATGAC AGTCAATATAGTAACCTATACACACACAATAAGCTAGTGACACCGTTTTC TTTTTTCAACGAGTTTTAAGCGTAACTTAAATATAAGTCTACAGAGTACA AATGTACAATACATATACGTGCACTGCATTACACTGCAGACTGGTCACGG TAGCCTACGTAGCAGACTCCTCGGTGGGCATTTCAACATGGCCGTCTGCC GCTGATGGTGCACTGTTTTCTTATTGCTAGCTAGTTCCTTATGCTCCTGT TTTCCGCTTTTCCGCTTGGAATAATTAGAAGGCAGTCAGATTACAATCAG ATAAACAAAACAAAAACTGCAATGCTTTTTGAGAGGAAGCTTGACCAAAG TAAGTAAAATGCCAGTCCAGGAGCCTGCTATGGAGGCTACACCACGTCAG GTGTTTCTGATCGCGTGATTATGGTATCCCGGGCCCGCCTATTGAAAAGA CTTATGTCTTGTTGACTTTATCGACTATGTACATTGGTCGACACGCTATG CAAATACGGATGTATGCAGACCGTAGTAAGAATGCAAAAGAGGACTTTAG AAAACCACGCTATTAAAACGTCAAAAACGGCTGGTTGAATTCTAGAATTG ATTACAAGAGGGATAAAAGATGTCACTTGCAGGTGACGTCTCTAGGGTCA GAAGTTTAAAGCTGTACGTGGTGAAATACGATACGTTTCTTTTATTGGGT CCCGGGCAAAACATTTACACAGGGAAGGTCGTTTGTCGTTGTACATCGCA TGAAAGCAGGTTCATGTCGGAATTCGAAGGTAGGTATGGTTTAACTTTCC GGGTTACCAAAATATTGAAGGGGTGTCTGCAAAACTGTAGAATTACGTAT GGTTGTCACTTCACACGTATTTACGTGCTGTGCGTGTAAAGGGTAGGTGC GTGTGTGGGGAGGGGGGCGCGGACGATCACGTTCATAGCCGGACCTTGGA CCGCACACCTGCGTGATCTTCACGTGAAGGCGAGTTCCCGTTAGAGGGTC GGTCGATATTGCCACACCGACAGACGTCTGTTCAGTCTGACAGTTTAGTG GGACTAACGTTATATTCTAAGTGCTGGTACTGAATATTCCCTTCAGTTAA ACGGTTCGCTGGTTACGTTTTGTTTGTAACGGACGGTAACGGAAAAGGTA GGTGATTTGCAAGTTGTCGTTTTTCCCAACACCTTTAGCGATTGGTGATT TACTAGAAGGTAATCTTATGTGTGTTAAGCATATCACTTGAAACGAGAGG TGACCAAAAATTGTTACCTAGTACCAAGGAGGTTATAGTATGACTATAAT CACTATACCCTCCTTGCTAGTACATATGTCAGGTGTGTTACTTAGTATTG TAGATTGCATGTATAGCTTTATCTTACCACAGTGGTCTGGCCTATCATTG GAATGTCGTACTTAAAGCGACAAATATACCCTTTAGATACAGCTGTTCAA TTCGTTATTTCTGTTTAAAAGTGTTTTTTTTTTCAAGTCACACCATGCGT TAAGTAAAAAAATACTAGATGGGTGATGATTTGAACCGTCAAAAAACTAG GTTTCTATCCGTCAAGCGACGCCGCAAATGAACTACAACTACCTGTAACG TTACATGTACTAAATCGACTCAAGCATACCATGCGTCACAATGTCACTAG TACTGGTACAACGGCTGAGTGCTGAAAGATTAGTCTCTGTATGAAGGCAG AACCCTCGTTGTTGATGGCCCTCCCTTGATCTCCAAGCAGATGTTGGGAG GGAAGATCGTAGTAACGTTTTCTGACCGCCTACTGTAAAATAAAACGGAG CAGCTATCAAACGTTACAAGTCGTCTCTCTCAACATCTGCTTGGAGATAT AACCCTCAAAGGCCGTTCAGTGAGAGGGTCATGGTTAATGATTATAGTAG TTAGGCCCTTTGTAGCCGCTAGTACTAGTAGCCGCTAGCTGCAATCTTTT CGATTGCTATCGGGTCATCGGTTACTTCGGGAGATGGTACTAAGGTAAGG CCATTTCAGGACTCTACGTGAAACTTGTGAGTACCGCCAGTGGCGTGAAG TCGGAAGCGGCTGAAAAATGACACCGTCTGGTAACAGGTTGTCGTCTGGT AACAGGTGACAAACACAGAGGGGTTATCTTTCTTTCAACAAATGATGATC CGTGCAATACTAGTATTTGCAGATTATTTCGCACGATTTAACACAGAGGT TAATCGATAATTGTTGTTTATATTTCATCTGTAGGTTTTCTCCAGGAACC ATAATCATGTATTTCTGGCAACAGTGGAAGATTCTGTCCCAGTTGCAGAG GCTGCCACGTCAGCGGCTGGTGCAGCTGACGGAAGTGCTGCAGGGCAAGG CGATGGGCGTGACGGAGCCAGCAGCCGCCACCGCCGCCGCGCAACATCTG CGACGCCGCCCCGACGCCAGCATGCAGGCCCAGACGGAGGGACTAGGCCA AGAGGACACCATGCTAGGGCTGAAACAGGCCCAACCGACGGTATCCAGTC ATCACCGGCGGGACTTCGACTCCAGCATGCAGGTACACGCCGACGGACTG GGCCATCACGACACGATGTTCGCGGCTCACGCCAGGGCCATGTCCACCGT GTCTGAGCAGCAAGTACCGAGCGTGAGGAAAACCAACGGCAACGGGAACG AGAGGAAGGGTCGCGCCCAGGTGATCGAGCAGCTACTGTCTCCAGATGCC CCGCAGGACGTCTTGAAGCGGGCCACCGACAGACTCAACCAGCAGGAGAA GATGCACCTGAGACAACTTGTCATGAAGGCGATGGCTTGATGGAATGATG CGTGTAACGTGGAGTCGTTGAAAACTGAGAACAGAGANGATGCGATATGC GTGTAACGTGAAGTCGTTGAAAAAGAACAGAGAGACTTTAGAAGTAACAT TTGTAGAGACTAATCTTAAAGCATTTTCATTCAACGATTACGTGTATCTT GAAGAGTGCCTCTTGTACAATTATTGTATTCATTACTTCTGGAACTATCA CAAACTTATCGTGTGTGAAAAAGCAATAGCAGTTTTATGTTAGGTGAAAA TGTTTCTATCAGCTCATCAAAGAGTTACGTCACTGCTACAGGTGTGCACA TCAAAGAGCCGCACAGGGCAACATGTGTCCTGTGCGTCCTGTGCACATCA GCCAGCCTGACGCCAGGTGGCGCTACTGCGCGCGACAGAATCCACACCTG CGGCATCTTGTCACACATGTTGCCCTGTGCGGCTCTTTGATGTGCACACC TGTAGCGGTGACGTAAGTCTTTGAAGAGCTGATAGAAACATTTTCACCTA ACATAAAACTGCTATTGTTCAGCTTTTGGTATGTTCCCTATAAGTAGTCA AAACCTATTGCCTGAAAAAGTTACCAAGCAGCAAGGTCTACAACAAAATA AACGTGTAATATATAACATTTTTCTCCTTCTTACCAGTTAATTGTAAATA GTGTGGCAGTGTTGTTGCTCACAAAAAGTTCCATCTGAAAGACTTTCATA ATTTGGTCTTACCCTGGTTGAATTGGAACCAACATTGTAAGCATATATGT TGATTTTACATATACTTTTTTGTCAGCAAAAATTGTGTGGAACTCCTTGC AACTTTAGAGCTATTTTTGTTGATATAGGTTTACCCTGAATTGTTAAGTG AATACAAGTATTTTCCATTGTTTCAATATACATGTATATGTCATCCCTGA AATTTACTTCTCTTATTCTCAGTGCTATGAATTGTGACTTTCAGAGTCTT ACAGGCGGTCATAGATCTTTGTGGTTAGAGTTACAAAGATGTAGTATGAA CTGCAGAAAACATGTCAAAAGTAGGTAATTCTTGTCATAGAAGAAGCTTT TTTAAAAAATGTATTAATGATTTCTCTCTGTCTGTATGAATGTACATAAT AAATACAAGCATATGTTTTGTAAGTGTAATTGTATTACTTGTGGAGAGAG AAAAGGCAACAGACTTTGGTTATTCTGCTAGAATATTAGAGCACGTTTTT TTTACCAAATAGCCCAGTGGGAAAAGTGCATGCTATACATTTGGGAGGTT GCAGGCTCAACCCCTAGCTGTGTCATTCATACCAAAGATGTTTATAGTGA TACATACTGCTTTAACTGCTTAGCACTCAGCAAGAGTAGGGGAGTTAAAC ACACACACCCCTACCAGTGGACTAGTCTCCTACTGTAGTGCTTGCATAAC TGTGTGACCC

Coding sequence (CDS) from alignment at Sc0000086:574401..579160+

>Blg00354.4 ID=Blg00354.4|Name=Blg00354.4|organism=Branchiostoma lanceolatum|type=CDS|length=534bp|location=Sequence derived from alignment at Sc0000086:574401..579160+ (Branchiostoma lanceolatum)
ATGTATTTCTGGCAACAGTGGAAGATTCTGTCCCAGTTGCAGAGGCTGCC
ACGTCAGCGGCTGGTGCAGCTGACGGAAGTGCTGCAGGGCAAGGCGATGG
GCGTGACGGAGCCAGCAGCCGCCACCGCCGCCGCGCAACATCTGCGACGC
CGCCCCGACGCCAGCATGCAGGCCCAGACGGAGGGACTAGGCCAAGAGGA
CACCATGCTAGGGCTGAAACAGGCCCAACCGACGGTATCCAGTCATCACC
GGCGGGACTTCGACTCCAGCATGCAGGTACACGCCGACGGACTGGGCCAT
CACGACACGATGTTCGCGGCTCACGCCAGGGCCATGTCCACCGTGTCTGA
GCAGCAAGTACCGAGCGTGAGGAAAACCAACGGCAACGGGAACGAGAGGA
AGGGTCGCGCCCAGGTGATCGAGCAGCTACTGTCTCCAGATGCCCCGCAG
GACGTCTTGAAGCGGGCCACCGACAGACTCAACCAGCAGGAGAAGATGCA
CCTGAGACAACTTGTCATGAAGGCGATGGCTTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00354.4-exon-Sc0000086-1570713199:574401..574627Blg00354.4-exon-Sc0000086-1570713199:574401..574627Branchiostoma lanceolatumexon
Blg00354.4-exon-Sc0000086-1570713199:577185..577744Blg00354.4-exon-Sc0000086-1570713199:577185..577744Branchiostoma lanceolatumexon
Blg00354.4-exon-Sc0000086-1570713199:577808..579160Blg00354.4-exon-Sc0000086-1570713199:577808..579160Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00354.4Blg00354.4-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:574401..579160 +
Properties
Property NameValue
GeneIDBlg00354