Blg00354.0 (mRNA) - B. lanceolatum

Overview
NameBlg00354.0
Unique NameBlg00354.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:573262..579160+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00354.0 ID=Blg00354.0|Name=Blg00354.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5899bp|location=Sequence derived from alignment at Sc0000086:573262..579160+ (Branchiostoma lanceolatum)
AGGAGGGGTTCTTGATACTTGTTTTGACGTAACAAACGCCGACATGCTGT TTCTCTGTGATATTGTAGCCCGGTTTGGACTAAAATAGCTAGGTTTGGCT ATTCTTGTTTAGCGTCGGCTTGCACATCTCATAACGTCGGTCATAGAAGA AGAAGAAGAACTTTATTGCGCGACAATTGTAGCTGGTACAATGACAACTT ACGTGCATGATAATTAAGCTATTGCTAATTGTTGACAGATATAGAGAACT AATCTAATCTATGACTAACAGTAAAATAGTCTATAAAATAATGTACATGC TAACGCTCTAGAATACAATATGTAATAATAATGTTGATAACAGTATGCTG TGTCAGGAATGTATGATATTGTCTCGTTTTTGCACAGAGTTATATACAAT GATATATATGATGACCTGATATCACGTGAATATATGTGTTTTCAAATGTG CCACATGCAGCGAAAGATGCATCTGCATAGTATTGAAGAAAAGGGCGATC GTGTGTGTAATACGGTTTATGATAGGCTTCAGGTGCCTTTAATTCTGTAT GCGTAGATTGGCAATAGCTGCACACACGTGAAATCTTGTTGTTCCGTTGG GTAGAGCCGGAGAGTGGGCGATGCCACCATTGGGGGTTTGGCAGTTTTTG TAAGCCGTTATTGGCCGTTATAATCTTATGTGCATTATAAAGCGTAATTT TTAGACGGCTGGATTCATCGTACCTAATAACGCTCTAATCCGAAATAGGG ACAAATCGAATTTTTAACATAATGCGCTATGAGCGCCGAGAATTTTGCAT ATTTCGAACTGCACTACCGACTACCCCCATGCAGACCCCCTACAATTGAC TCTACCCGAGAGGTCGACTGTCAAGCCGGAGGAGAGCCGAGCCGGATGTT TAAGGATCTCTAACCCGGTAGTGCAGATAACTGAGACGGGGGCTCAGAAA GGACTACATCGTTCAACAGTTCTCAACAGCGGTAGGTGGGAGTTTTATAG TTCGTGACTTTCGTAGTAGATCATAGGTAGGTTGTAGCAAGGAGATTAAT ATCAACCAACCTCCTTGGTTGCTGAAAATTTGGAATTACCAGCACTAACG TTATAGTGTCCATCCATGTAAACAATAAAAGATGTTAAACGTCGCCCTAA CATAAACACGGGAGGCTGACGTTTCTGTAAAATCGGATCACTTCGCTATG CATGAAAACTAAAAGCACCACTTGGTTTGTTGTCTGTTTGTCCATTTGCA TGCATGTCGGGTACAATCGCCTGTATGCATGACTGGTACAGGCATTAGTA GTCTACACCAGACTACTAGCTGTAGAGTTGCTGAAAAATACACTGAGTAG CAAGTGGCCAAGAAGGGTGAGTAATTTTTCGGACTGAAGAGTTGCTAAGG TGGACCTCTGTGTCCTGCTAACTCTTCTGACAAATAAGTCACCATATTTT GCCAATGTCTCCTATTTTGTTGTAAAGCTAAGGAGTCTCGAGGAGACTAT GTATTGATTTGTGCTAACTGAGCTGGACTGTTTCTATCGTGTAACACTGT AGCACTGAACAAGGCACGATCCTCTGGTTGCGCTCAAGAATCATTTTCGC TGAGTATAGTCGACAGGTTATGCGTTGGCATGGCTTGCAACGGTAGAAAA GTTAATGTACGCCACGGCTCTTTCAAAGACTATCATGACAGTCAATATAG TAACCTATACACACACAATAAGCTAGTGACACCGTTTTCTTTTTTCAACG AGTTTTAAGCGTAACTTAAATATAAGTCTACAGAGTACAAATGTACAATA CATATACGTGCACTGCATTACACTGCAGACTGGTCACGGTAGCCTACGTA GCAGACTCCTCGGTGGGCATTTCAACATGGCCGTCTGCCGCTGATGGTGC ACTGTTTTCTTATTGCTAGCTAGTTCCTTATGCTCCTGTTTTCCGCTTTT CCGCTTGGAATAATTAGAAGGCAGTCAGATTACAATCAGATAAACAAAAC AAAAACTGCAATGCTTTTTGAGAGGAAGCTTGACCAAAGTAAGTAAAATG CCAGTCCAGGAGCCTGCTATGGAGGCTACACCACGTCAGGTGTTTCTGAT CGCGTGATTATGGTATCCCGGGCCCGCCTATTGAAAAGACTTATGTCTTG TTGACTTTATCGACTATGTACATTGGTCGACACGCTATGCAAATACGGAT GTATGCAGACCGTAGTAAGAATGCAAAAGAGGACTTTAGAAAACCACGCT ATTAAAACGTCAAAAACGGCTGGTTGAATTCTAGAATTGATTACAAGAGG GATAAAAGATGTCACTTGCAGGTGACGTCTCTAGGGTCAGAAGTTTAAAG CTGTACGTGGTGAAATACGATACGTTTCTTTTATTGGGTCCCGGGCAAAA CATTTACACAGGGAAGGTCGTTTGTCGTTGTACATCGCATGAAAGCAGGT TCATGTCGGAATTCGAAGGTAGGTATGGTTTAACTTTCCGGGTTACCAAA ATATTGAAGGGGTGTCTGCAAAACTGTAGAATTACGTATGGTTGTCACTT CACACGTATTTACGTGCTGTGCGTGTAAAGGGTAGGTGCGTGTGTGGGGA GGGGGGCGCGGACGATCACGTTCATAGCCGGACCTTGGACCGCACACCTG CGTGATCTTCACGTGAAGGCGAGTTCCCGTTAGAGGGTCGGTCGATATTG CCACACCGACAGACGTCTGTTCAGTCTGACAGTTTAGTGGGACTAACGTT ATATTCTAAGTGCTGGTACTGAATATTCCCTTCAGTTAAACGGTTCGCTG GTTACGTTTTGTTTGTAACGGACGGTAACGGAAAAGGTAGGTGATTTGCA AGTTGTCGTTTTTCCCAACACCTTTAGCGATTGGTGATTTACTAGAAGGT AATCTTATGTGTGTTAAGCATATCACTTGAAACGAGAGGTGACCAAAAAT TGTTACCTAGTACCAAGGAGGTTATAGTATGACTATAATCACTATACCCT CCTTGCTAGTACATATGTCAGGTGTGTTACTTAGTATTGTAGATTGCATG TATAGCTTTATCTTACCACAGTGGTCTGGCCTATCATTGGAATGTCGTAC TTAAAGCGACAAATATACCCTTTAGATACAGCTGTTCAATTCGTTATTTC TGTTTAAAAGTGTTTTTTTTTTCAAGTCACACCATGCGTTAAGTAAAAAA ATACTAGATGGGTGATGATTTGAACCGTCAAAAAACTAGGTTTCTATCCG TCAAGCGACGCCGCAAATGAACTACAACTACCTGTAACGTTACATGTACT AAATCGACTCAAGCATACCATGCGTCACAATGTCACTAGTACTGGTACAA CGGCTGAGTGCTGAAAGATTAGTCTCTGTATGAAGGCAGAACCCTCGTTG TTGATGGCCCTCCCTTGATCTCCAAGCAGATGTTGGGAGGGAAGATCGTA GTAACGTTTTCTGACCGCCTACTGTAAAATAAAACGGAGCAGCTATCAAA CGTTACAAGTCGTCTCTCTCAACATCTGCTTGGAGATATAACCCTCAAAG GCCGTTCAGTGAGAGGGTCATGGTTAATGATTATAGTAGTTAGGCCCTTT GTAGCCGCTAGTACTAGTAGCCGCTAGCTGCAATCTTTTCGATTGCTATC GGGTCATCGGTTACTTCGGGAGATGGTACTAAGGTAAGGCCATTTCAGGA CTCTACGTGAAACTTGTGAGTACCGCCAGTGGCGTGAAGTCGGAAGCGGC TGAAAAATGACACCGTCTGGTAACAGGTTGTCGTCTGGTAACAGGTGACA AACACAGAGGGGTTATCTTTCTTTCAACAAATGATGATCCGTGCAATACT AGTATTTGCAGATTATTTCGCACGATTTAACACAGAGGTTAATCGATAAT TGTTGTTTATATTTCATCTGTAGGTTTTCTCCAGGAACCATAATCATGTA TTTCTGGCAACAGTGGAAGATTCTGTCCCAGTTGCAGAGGCTGCCACGTC AGCGGCTGGTGCAGCTGACGGAAGTGCTGCAGGGCAAGGCGATGGGCGTG ACGGAGCCAGCAGCCGCCACCGCCGCCGCGCAACATCTGCGACGCCGCCC CGACGCCAGCATGCAGGCCCAGACGGAGGGACTAGGCCAAGAGGACACCA TGCTAGGGCTGAAACAGGCCCAACCGACGGTATCCAGTCATCACCGGCGG GACTTCGACTCCAGCATGCAGGTACACGCCGACGGACTGGGCCATCACGA CACGATGTTCGCGGCTCACGCCAGGGCCATGTCCACCGTGTCTGAGCAGC AAGTACCGAGCGTGAGGAAAACCAACGGCAACGGGAACGAGAGGAAGGGT CGCGCCCAGGTGATCGAGCAGCTACTGTCTCCAGATGCCCCGCAGGACGT CTTGAAGCGGGCCACCGACAGACTCAACCAGCAGGAGAAGATGCACCTGA GACAACTTGTCATGAAGGCGATGGCTTGATGGAATGATGCGTGTAACGTG GAGTCGTTGAAAACTGAGAACAGAGANGATGCGATATGCGTGTAACGTGA AGTCGTTGAAAAAGAACAGAGAGACTTTAGAAGTAACATTTGTAGAGACT AATCTTAAAGCATTTTCATTCAACGATTACGTGTATCTTGAAGAGTGCCT CTTGTACAATTATTGTATTCATTACTTCTGGAACTATCACAAACTTATCG TGTGTGAAAAAGCAATAGCAGTTTTATGTTAGGTGAAAATGTTTCTATCA GCTCATCAAAGAGTTACGTCACTGCTACAGGTGTGCACATCAAAGAGCCG CACAGGGCAACATGTGTCCTGTGCGTCCTGTGCACATCAGCCAGCCTGAC GCCAGGTGGCGCTACTGCGCGCGACAGAATCCACACCTGCGGCATCTTGT CACACATGTTGCCCTGTGCGGCTCTTTGATGTGCACACCTGTAGCGGTGA CGTAAGTCTTTGAAGAGCTGATAGAAACATTTTCACCTAACATAAAACTG CTATTGTTCAGCTTTTGGTATGTTCCCTATAAGTAGTCAAAACCTATTGC CTGAAAAAGTTACCAAGCAGCAAGGTCTACAACAAAATAAACGTGTAATA TATAACATTTTTCTCCTTCTTACCAGTTAATTGTAAATAGTGTGGCAGTG TTGTTGCTCACAAAAAGTTCCATCTGAAAGACTTTCATAATTTGGTCTTA CCCTGGTTGAATTGGAACCAACATTGTAAGCATATATGTTGATTTTACAT ATACTTTTTTGTCAGCAAAAATTGTGTGGAACTCCTTGCAACTTTAGAGC TATTTTTGTTGATATAGGTTTACCCTGAATTGTTAAGTGAATACAAGTAT TTTCCATTGTTTCAATATACATGTATATGTCATCCCTGAAATTTACTTCT CTTATTCTCAGTGCTATGAATTGTGACTTTCAGAGTCTTACAGGCGGTCA TAGATCTTTGTGGTTAGAGTTACAAAGATGTAGTATGAACTGCAGAAAAC ATGTCAAAAGTAGGTAATTCTTGTCATAGAAGAAGCTTTTTTAAAAAATG TATTAATGATTTCTCTCTGTCTGTATGAATGTACATAATAAATACAAGCA TATGTTTTGTAAGTGTAATTGTATTACTTGTGGAGAGAGAAAAGGCAACA GACTTTGGTTATTCTGCTAGAATATTAGAGCACGTTTTTTTTACCAAATA GCCCAGTGGGAAAAGTGCATGCTATACATTTGGGAGGTTGCAGGCTCAAC CCCTAGCTGTGTCATTCATACCAAAGATGTTTATAGTGATACATACTGCT TTAACTGCTTAGCACTCAGCAAGAGTAGGGGAGTTAAACACACACACCCC TACCAGTGGACTAGTCTCCTACTGTAGTGCTTGCATAACTGTGTGACCC

Coding sequence (CDS) from alignment at Sc0000086:573262..579160+

>Blg00354.0 ID=Blg00354.0|Name=Blg00354.0|organism=Branchiostoma lanceolatum|type=CDS|length=534bp|location=Sequence derived from alignment at Sc0000086:573262..579160+ (Branchiostoma lanceolatum)
ATGTATTTCTGGCAACAGTGGAAGATTCTGTCCCAGTTGCAGAGGCTGCC
ACGTCAGCGGCTGGTGCAGCTGACGGAAGTGCTGCAGGGCAAGGCGATGG
GCGTGACGGAGCCAGCAGCCGCCACCGCCGCCGCGCAACATCTGCGACGC
CGCCCCGACGCCAGCATGCAGGCCCAGACGGAGGGACTAGGCCAAGAGGA
CACCATGCTAGGGCTGAAACAGGCCCAACCGACGGTATCCAGTCATCACC
GGCGGGACTTCGACTCCAGCATGCAGGTACACGCCGACGGACTGGGCCAT
CACGACACGATGTTCGCGGCTCACGCCAGGGCCATGTCCACCGTGTCTGA
GCAGCAAGTACCGAGCGTGAGGAAAACCAACGGCAACGGGAACGAGAGGA
AGGGTCGCGCCCAGGTGATCGAGCAGCTACTGTCTCCAGATGCCCCGCAG
GACGTCTTGAAGCGGGCCACCGACAGACTCAACCAGCAGGAGAAGATGCA
CCTGAGACAACTTGTCATGAAGGCGATGGCTTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00354.0-exon-Sc0000086-1570713199:573262..573353Blg00354.0-exon-Sc0000086-1570713199:573262..573353Branchiostoma lanceolatumexon
Blg00354.0-exon-Sc0000086-1570713199:574096..574242Blg00354.0-exon-Sc0000086-1570713199:574096..574242Branchiostoma lanceolatumexon
Blg00354.0-exon-Sc0000086-1570713199:577185..577744Blg00354.0-exon-Sc0000086-1570713199:577185..577744Branchiostoma lanceolatumexon
Blg00354.0-exon-Sc0000086-1570713199:577808..579160Blg00354.0-exon-Sc0000086-1570713199:577808..579160Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00354.0Blg00354.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:573262..579160 +
Properties
Property NameValue
GeneIDBlg00354