Blg00336.1 (mRNA) - B. lanceolatum

Overview
NameBlg00336.1
Unique NameBlg00336.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:406967..413637-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00336.1 ID=Blg00336.1|Name=Blg00336.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6671bp|location=Sequence derived from alignment at Sc0000086:406967..413637- (Branchiostoma lanceolatum)
CTATTTTCCCAGCGACCCGCAGATGGCAGAGGCTGGTAGAGTCCAGAAAT GGATCTATAGTCGAACAGCAACGCCGACTAGGGACCAAAGTAGATACTGC TTTTCGAAAAGACCTTTCGAAATTATGAGCCTAAGCTTGGCAAATTCGAG GACACATTTGTGCCTCGCTGGCTTTCATGTTTTTGCATACAGTTCAAGGT TTAGGGCGCACAATTTTTTACCGTTAAAGTCGTAGAATCCGGGGGTCGCG GTGAAATGCTGTGTGCTGCTACCTTAACATCAATTGGTGTATCAGGTACA GTATCCTGACCTTTAACCTTTGCGCGTAGGAAATAAAAGTTGGCTCGCTA TTTTTGTATAAGAAACGCATATTTATCGTCGTTATTACATCTGGTAGAAC AATGGGTTGAATATGGAAGGAATCGTCACATCATTGGAGTTTCCGGAAGT CCCAAATAGCGAGGATGATACCAGGGTAAGTGATGTGAACGGATTTGTGT GTGGTGATGATATGCCCCCCTCCCCATCTTCAGCAAGTTCTAGTTCTTGG ACGTATTTGGAAATAATTAAACGATACTCCTTTGTTTTGGATAACCACAG ATTTTAACACTACGTAATTTACATTTTCAACATCTCCTTTGTCAGTTTTT GGAGTCTTCAAGTGTCAAGTGTGAGATGATATTTTACAATGTTTAATACT ATAATTTTGATATTCCTTGTTGTTGTTGTCCTTGTTTAACGTCTATTACA TGGCTAGACGTTGTCTCTTGGTGTACATGCACAATGTACAGTTGCACATG CACAAATGGACAGTATTAAGCAGGTTTTAATTTCAAACAAATTTTCCATT CTGGCAGAAAATGCCGAATAGTCAAAAGTAGAAAATACCTGTTGTTTCTT CCACTGCTCAGGACTGGAGCTACACCATGAGAAGAAGCATGCAGGTGCGT CCAAATATAGCCATTTATGCAAATATGAGATTATTTTAATTAGCTCTAGC AAACCATTCATTATCTTTTTTTTTATACCAACGGTATTAGCCATGGTGGT AAGTACTATTTCCGAAACTTAATACAAATTTGTATGAAAAAGTAGTAAAT GCAACTTCTTTCATCGGCGCAGATAATGTTACAAGTTACAACGGCACCAA ACATATTGGACATTTACTGTAAACATATGTTGGTATCAGCAATTTCATAC AGAAGCAGTGCACAGTGTGATTAGAAGTGATTAGAAGTTCCATACATGTA TTTGTTCCATTCACTACTAGTATTACATGTACTTAGACATGGACTCAAAA CATTTTTATCCATAGGAAATCCTTCCCAATGTGTTCCTGGGGCCATACTC TGTAGCTACAAAGAGAAATGTAAGTCATATTTGTAGCTATGTATAGTGAT ATCCTTTCTATCAGAACAAGTGTACAAATACTGTTGATTGTTAAGACTTG TCTGATACTGTGTGGCATTGTCATTGTTGTGATTGGATGATGTTGTTTCT AATGTTAAAAGAAACTAAAGAATGTCATCATTGAACGTGAAGCAGTCACA AAGTCTAATCTCCAGTATTGAAAGTAGTGGTAGTAATTAGTACTTTTGTA TACCTGATGATAGGTAATGTTACATGAATGATGAGTTGGTCTTTCTTTAC CATTAAAACTACAATAAAAAAATCCATGTTTCCCCTTACAGCTTTCCAAC CTGTTGGAGTTAGGCATCACCCATGTAGTGTGTGTTAGAGATACCCTGGA GGCTAAGATTATCAAACCAAACTTTTCAGATCATTTCAGGTGAGTTTCGT ATTATTACTGCTTATATAGGGGATATTCCTTTGAACGGAACAGGACATTT TTCAACCTCTCTTATAGAAGAGCTATAAATACATGCTATAGAAGAGCTAT AAGTATATGAAAAAAACAACTTAAACAAGGATATTATTGGTTGATAAAGG TTGTCATGGTAAATGCAGCTCAGTAAATGGGTTCAAGCAGCAAGGACTAT CATTTTTGATAAATTGTGAATAAAGAAGAATAAAATTGAGTCTTAACTGC TGAATTACTAAATTGTGAATAAAGTACAAAATGATTGATGATTGTAATGA AGTTGATGGTGAAATCATAATTTTTTTCGTTTTGTCTTTTCTTCTTTCAG ATACTTGGTACTGGATGTTGCAGATAAAACCACAGAAAACATAATTCAAC ACTTTCCTAAGGTGACATGTGCTATCCACTTTTATCTAGATATGATGTTG AGGTGTCCTTCCTCAGAAATGTGATAGGTGGCATGGTTGGACAAAAAGAC TAAATGATTTTTTTTTCATATCAATGATAAAACCATAGAAAACATAATTC AACACTTTCCTAAGGTGACATGTGCTATCCACTTTAATCTAGATATGATG TTGAGGTGTCCTTCCTCAGAAATATGATAGGTGGCATGGTTGGACAAAAA GACTAAGAATTTTTTTTCATATCAATGTAACACAATACTTGTAGCTGATA GAGGCTCATTGCTATGAGAAGGAAAGGTAGAATTAGGGATAAACTGATGT GTAAGGAAAGGAAAATTGAATAATGGAAAATGGAGGCATTGCATAGAAGT GAATGTCATTGCACACTATGCACGAATGCTCAGGGCTAAAAATTGATTTG GTGGAATAGGTACCCTTGTGTAACTAGCCTACAAAAGTTTATGTTATAAC ACAGTTTTTATTACTTTTCTGACACAAATATCAAGAATATGCTGTAATCT GATGTACAATAGTAGCTGAATTTAGATCAAATTGCCATATCAGCATTTTC ATCTTTTCTTCCCAACAAAGGTTAAAGAATTCATGGACCAGTGTCTACAA ACTGGAGGTAGGGGACAATCTATGGAAGTATTCAATTGTACACTTTCATT AATGCCTTTCCTTAGATCCAATGAGACAGAAACCAATACATCCTCTGTAC AGCCATTTTTACTTCTTGTTTCTTACAGGGAAAGTCCTAGTACATGGCAA TGGGGGCATATCCAGAAGGTATGTATACTGTGCAGATACTTGTGTAAAAT TCATTATCATTGCATTGCATTAGGAACTTAAAGAGCTTTGGAAAGTCGTC TTTTTTAACTGAATGTTGAAATGACATAAGCATCTTTTAATATCCTCCAG AAGTTGCCCATATATTGTGTTACTTTTTATGCTTACAGTGCTGCTCTGGT GATAGCTTACATGATGGAGACATATGGAATGACTTATAGGTGAGTTTTGT CTCATAAGGCCACACCAACTTGATTTTATGGATGACATCCTCTGGAGACC CCAAAACTAATGCGCGCGGGCGAAAAAAAAGAAAATCCAGCACAAAAAAA AATGCTGCTAAACCACAGGACTACTAGTACAAAGCTGGTATTGCGAACAA TACTGGTATTGCGTACATGTAGGTTGTCTTGTTCATCATAGCAGACTCAG CGCAAGTGATTGATTTTTAATATATTGACAAGAACGACCAAAGAAGTATA CTATTAGAAGGTATTTGGCTCCAAGGACTGTGGATGATATATGATTGTGA TGAGAATACTTAGTCTAGTACTCATATACACCCATAAGGGCAGTTTCAAC ATACATGGCATTGAACTCCATATTAAGCATTCCATAGTTTACGCTCACAA ATCTCACTGTGAGACCTCTGCCAATCCCTCAATTCCTCTCCCATGTCTCT CATTATTGCCAAAGAAACGTGTGAGAGCCACTCTGGATAGGTCGTGTTTG AAATTGTCTGGGCGATTCTCTCGTACAACTGTAGAAACGCAAAATCCCCC TAGCCAACATCGATGGCATATCAATCCACAAATACGCCCCGGTTTTTCGA TAAGCCGGCACAATGCTAGCCTTTGCGGCAATCTAAGTCAGCAAGTTCCG GAGTTCTGTGTAGCCTTGGAGGAGGTGATTTTTTCTGTGTTTTTTTTACA ACAGGCGAAAATCAATGCGCGCGCGGATGTCATCCATAAGATTAAGATGG TGTGGCCTAACTACATATTATTAATCATTTTTCTAGACAAATGCAGAGAA GAGATCATCTACAAGTACAAACTCTGTATTTGATCACCCATGGATGCATC TATTCTAACAAGATCTATTTAGTGAGAAATATGGATGCACTGAAATACAA AACAGGGATCTGTATACATTATATTTCTGTGTTTTTTGATGATTGTTGAT TGTTGAATGTTGTTGTGTATTGTCAGAGCTGCGTTCCATCATGTACAACA GAGGAGATTCTGTATCCAGCCTAACGAGGGGTTTGCTAACCAGCTGATGG AGTATGAACCCATCTACATGGCCAGACTCACCGTCAGACCTGGGACCTGC TGGGGACAGAGCAACACACAGCTCCATGGTAACTCACGTCTCCATGGTAA CACTCATCTCCATGGTAACACTCATCTCCATGGTAACATACTGTCCATGG AAACATATGTGTGAATGGTAACATAATGTACAACTCCTTGGTGTAACATA CAAGTCCTTGGTAACACAATAGTACAATATTGCTTGGGGATTTTTCATTA ACTTAGAAAAGACATCAACAGGGGAATATCCACCACTTGCTTGCAAATAG GTTGGCTTTCCACTAGAGACTTTTCAATGAAATTGTGTATGTATGAGATG ATAAGAAAGTTCATGCATCTAAGTATGCATGAGTAAGGTCAAAGAGACAT AAACAAACCATTGTTATGCAAATTGACCGTCAGTGTCTGGACATGTATAA AGAATGGTTAAGGCAAGAACTGTTTGAAAGTCAGGTACTTAGAAATGTGA ACTTCCTTATAGACATAATGAGGCGATAGATTGCAATATGAAAAATTGAC ATAGCTACCTCATAATGAAGTATGAAGAGAAATTTTGTGTTATTGTTTTC CTTCATCTCACCGTTGTTCCCCCCCAGGTGGTAGGAAACGGAGCCTGGAT GAGGAGGCTGGGGAGGAGGCCATGGACCAGACAGGAGACCCTAGTCTGGA CCCACAGAACAAGTCACATCATCTGGACACATGAGGCCGGACAGATGTGC TCTCACAACTTACATATTCAATTTTGATTGACAGTACAATAATTACTGTA AGATTGGGTTTAAGGGTCCATTTTCTTTGCAATATCACTCTGTGTTTGTG TCCAAAACGTGTCTAAGAAAATTTGATGACTTGTGATGTCAAAACGTTGT TTTTTTCCTGTCATCATAAAAGATTAGTTTATGACTACACATATAGGGGC CTTGTAGTCCATACATACTTTAGTTTGGCAACTTGATATTCATTTCAACC CTTCGTGTAATCTGCAGGGTTGTGTTTTAAGTCATGGAGAATCATAAAAG AATGTTGGTAGTCAATTCAACTTGTTGACAATGTAAGATATGTGGCTGAC ATTACTTGTGAAACGTTGTTGATTAATTTTACAGGGACCAAGGCTACAAT TTTGGGTGCATATTTCTACATTGATTTTGCAATAATAATAGAAAGATTTT TTCCATTTCACCAGCAATCAGTAGTTCCGCTTTGAGTTAACACGTAAATT CGTAACTGCAATGTCAGTGTAGTAGGTAGGGTGTACCATAATTATGAAAA AATAACAACATTGTCCAATGTGCAAAATATGTATGTTGTAAAGTTCACAG TATGCCCAAACTGCTACAGATCATATGTTTTTGTGTTGTTTGCTTTAGAG ATGGATGGGTTACGGTGGTACAACACTAGAGAAAAGTGGAATGCCATGTG TATTAGGGTCGGATAAAATGTAACTTGGTTTGTTGTTCTTGTGAACGGTA GCTTTTATAGCCATGTGTCAATCAAGTTATTGATGCTCTTGTCTTAGCAT TAAAAAAGCATAACATTCTTATTGATATTACATGTTAGCTTCTATTCACT GATTTGGTGAAAAGGTAGCTTATAAGTAGTAGGGATAGAAACTAGTGGTT TGTGTGTCAAACATGTATATGAACATATAATGTTACACGTGAAGATTTTC ACAGATACATGTATATGTATATGATGAGGACCATATTGTTATCAGGGTCT ACCACTGTGCCTTAGCTTTTCTTGTGTTACTTGTTTTTCACATTGATCTG TGTACTCTTATAGACGATGTTGCAATTTTTGTGAGTGTTGCACATGTCAA GTAGAAAGGGTTCTTGTTATGTTCTTGACATTTATGTAGCCATAGTGACA GGCTCTTGGGCCATATCAATTAACGTGTGGTAAGAGAACTTAGGAAACCA TAGTGTACCAAGGCACCTGCCTATGGAAAGAGGTGGGGAGGGGGTCCCCT TACTTTTGGGAAGAGTGCCTAAAGTATGCATAAAATGATGCATTTTAAGC ATGCTTTGTGCAAATTACTGATACACTATTCACCATCTGTACAGGGAACG TTAATCCGTTTACGCCAAAGTGTTGAACAAAATTTATCCCTTGAAGAGAA ATCTTTGGGAAAACAGGCCAATTGAGTACTATTACTAGATACCCTGTTTG AATGGATTCTTATCAAGTACTTATTTACAAGTGAGCTCTGTGTACAACTA AACACAAGAGGTAGGTGTGTACACATGTATGTCTGCATGTTTTCTGTGGA TGTCCTGATCATTTGTCTAAAAGCCTCGTGTGTTCAGTACTGTAGTTGCT AAGGTTCAACAACATTGTAAA

Coding sequence (CDS) from alignment at Sc0000086:406967..413637-

>Blg00336.1 ID=Blg00336.1|Name=Blg00336.1|organism=Branchiostoma lanceolatum|type=CDS|length=696bp|location=Sequence derived from alignment at Sc0000086:406967..413637- (Branchiostoma lanceolatum)
ATGGAAGGAATCGTCACATCATTGGAGTTTCCGGAAGTCCCAAATAGCGA
GGATGATACCAGGGACTGGAGCTACACCATGAGAAGAAGCATGCAGGAAA
TCCTTCCCAATGTGTTCCTGGGGCCATACTCTGTAGCTACAAAGAGAAAT
CTTTCCAACCTGTTGGAGTTAGGCATCACCCATGTAGTGTGTGTTAGAGA
TACCCTGGAGGCTAAGATTATCAAACCAAACTTTTCAGATCATTTCAGAT
ACTTGGTACTGGATGTTGCAGATAAAACCACAGAAAACATAATTCAACAC
TTTCCTAAGGTTAAAGAATTCATGGACCAGTGTCTACAAACTGGAGGGAA
AGTCCTAGTACATGGCAATGGGGGCATATCCAGAAGTGCTGCTCTGGTGA
TAGCTTACATGATGGAGACATATGGAATGACTTATAGAGCTGCGTTCCAT
CATGTACAACAGAGGAGATTCTGTATCCAGCCTAACGAGGGGTTTGCTAA
CCAGCTGATGGAGTATGAACCCATCTACATGGCCAGACTCACCGTCAGAC
CTGGGACCTGCTGGGGACAGAGCAACACACAGCTCCATGGTGGTAGGAAA
CGGAGCCTGGATGAGGAGGCTGGGGAGGAGGCCATGGACCAGACAGGAGA
CCCTAGTCTGGACCCACAGAACAAGTCACATCATCTGGACACATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00336.1Blg00336.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00336.1-exon-Sc0000086-1570713199:413163..413637Blg00336.1-exon-Sc0000086-1570713199:413163..413637Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:412694..412726Blg00336.1-exon-Sc0000086-1570713199:412694..412726Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:412269..412322Blg00336.1-exon-Sc0000086-1570713199:412269..412322Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:411849..411946Blg00336.1-exon-Sc0000086-1570713199:411849..411946Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:411427..411487Blg00336.1-exon-Sc0000086-1570713199:411427..411487Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:410781..410817Blg00336.1-exon-Sc0000086-1570713199:410781..410817Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:410620..410659Blg00336.1-exon-Sc0000086-1570713199:410620..410659Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:410399..410449Blg00336.1-exon-Sc0000086-1570713199:410399..410449Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:409260..409411Blg00336.1-exon-Sc0000086-1570713199:409260..409411Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:407037..408710Blg00336.1-exon-Sc0000086-1570713199:407037..408710Branchiostoma lanceolatumexon
Blg00336.1-exon-Sc0000086-1570713199:406967..407014Blg00336.1-exon-Sc0000086-1570713199:406967..407014Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:406967..413637 -
Properties
Property NameValue
GeneIDBlg00336