Blg00336.0 (mRNA) - B. lanceolatum

Overview
NameBlg00336.0
Unique NameBlg00336.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:406580..413988-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00336.0 ID=Blg00336.0|Name=Blg00336.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7409bp|location=Sequence derived from alignment at Sc0000086:406580..413988- (Branchiostoma lanceolatum)
GAAATCTTTGCGGGATAACGTTAGATACTCTCCTAATGATGAAGATGCTT GCTCTCGAATTAATCCTCATCCCAATTTTGCAACTACTTGTTTTCCTATT TTTCTTACCTTCACTGTTTAGGAACTTAAATATCTATACTGTAATTCATG TTTTCCTGTTCATTGCATGGAGGTGAAAGATGGGAATGGATCTTAGTCTC TACCAGACTAACCGCGTCGGCTATAGAGAGAACATTTGCCGGGGGACTTT GGCCATGGGGGATAACATTCCCATCCGCAGGGTTGCAATATTGGGCCCTA TCTCCATAGCCGACCCCCTTCATACAATTGACTCTATTTGGCCAATTTCT ACTATTTTCCCAGCGACCCGCAGATGGCAGAGGCTGGTAGAGTCCAGAAA TGGATCTATAGTCGAACAGCAACGCCGACTAGGGACCAAAGTAGATACTG CTTTTCGAAAAGACCTTTCGAAATTATGAGCCTAAGCTTGGCAAATTCGA GGACACATTTGTGCCTCGCTGGCTTTCATGTTTTTGCATACAGTTCAAGG TTTAGGGCGCACAATTTTTTACCGTTAAAGTCGTAGAATCCGGGGGTCGC GGTGAAATGCTGTGTGCTGCTACCTTAACATCAATTGGTGTATCAGGTAC AGTATCCTGACCTTTAACCTTTGCGCGTAGGAAATAAAAGTTGGCTCGCT ATTTTTGTATAAGAAACGCATATTTATCGTCGTTATTACATCTGGTAGAA CAATGGGTTGAATATGGAAGGAATCGTCACATCATTGGAGTTTCCGGAAG TCCCAAATAGCGAGGATGATACCAGGGTAAGTGATGTGAACGGATTTGTG TGTGGTGATGATATGCCCCCCTCCCCATCTTCAGCAAGTTCTAGTTCTTG GACGTATTTGGAAATAATTAAACGATACTCCTTTGTTTTGGATAACCACA GATTTTAACACTACGTAATTTACATTTTCAACATCTCCTTTGTCAGTTTT TGGAGTCTTCAAGTGTCAAGTGTGAGATGATATTTTACAATGTTTAATAC TATAATTTTGATATTCCTTGTTGTTGTTGTCCTTGTTTAACGTCTATTAC ATGGCTAGACGTTGTCTCTTGGTGTACATGCACAATGTACAGTTGCACAT GCACAAATGGACAGTATTAAGCAGGTTTTAATTTCAAACAAATTTTCCAT TCTGGCAGAAAATGCCGAATAGTCAAAAGTAGAAAATACCTGTTGTTTCT TCCACTGCTCAGGACTGGAGCTACACCATGAGAAGAAGCATGCAGGTGCG TCCAAATATAGCCATTTATGCAAATATGAGATTATTTTAATTAGCTCTAG CAAACCATTCATTATCTTTTTTTTTATACCAACGGTATTAGCCATGGTGG TAAGTACTATTTCCGAAACTTAATACAAATTTGTATGAAAAAGTAGTAAA TGCAACTTCTTTCATCGGCGCAGATAATGTTACAAGTTACAACGGCACCA AACATATTGGACATTTACTGTAAACATATGTTGGTATCAGCAATTTCATA CAGAAGCAGTGCACAGTGTGATTAGAAGTGATTAGAAGTTCCATACATGT ATTTGTTCCATTCACTACTAGTATTACATGTACTTAGACATGGACTCAAA ACATTTTTATCCATAGGAAATCCTTCCCAATGTGTTCCTGGGGCCATACT CTGTAGCTACAAAGAGAAATGTAAGTCATATTTGTAGCTATGTATAGTGA TATCCTTTCTATCAGAACAAGTGTACAAATACTGTTGATTGTTAAGACTT GTCTGATACTGTGTGGCATTGTCATTGTTGTGATTGGATGATGTTGTTTC TAATGTTAAAAGAAACTAAAGAATGTCATCATTGAACGTGAAGCAGTCAC AAAGTCTAATCTCCAGTATTGAAAGTAGTGGTAGTAATTAGTACTTTTGT ATACCTGATGATAGGTAATGTTACATGAATGATGAGTTGGTCTTTCTTTA CCATTAAAACTACAATAAAAAAATCCATGTTTCCCCTTACAGCTTTCCAA CCTGTTGGAGTTAGGCATCACCCATGTAGTGTGTGTTAGAGATACCCTGG AGGCTAAGATTATCAAACCAAACTTTTCAGATCATTTCAGGTGAGTTTCG TATTATTACTGCTTATATAGGGGATATTCCTTTGAACGGAACAGGACATT TTTCAACCTCTCTTATAGAAGAGCTATAAATACATGCTATAGAAGAGCTA TAAGTATATGAAAAAAACAACTTAAACAAGGATATTATTGGTTGATAAAG GTTGTCATGGTAAATGCAGCTCAGTAAATGGGTTCAAGCAGCAAGGACTA TCATTTTTGATAAATTGTGAATAAAGAAGAATAAAATTGAGTCTTAACTG CTGAATTACTAAATTGTGAATAAAGTACAAAATGATTGATGATTGTAATG AAGTTGATGGTGAAATCATAATTTTTTTCGTTTTGTCTTTTCTTCTTTCA GATACTTGGTACTGGATGTTGCAGATAAAACCACAGAAAACATAATTCAA CACTTTCCTAAGGTGACATGTGCTATCCACTTTTATCTAGATATGATGTT GAGGTGTCCTTCCTCAGAAATGTGATAGGTGGCATGGTTGGACAAAAAGA CTAAATGATTTTTTTTTCATATCAATGATAAAACCATAGAAAACATAATT CAACACTTTCCTAAGGTGACATGTGCTATCCACTTTAATCTAGATATGAT GTTGAGGTGTCCTTCCTCAGAAATATGATAGGTGGCATGGTTGGACAAAA AGACTAAGAATTTTTTTTCATATCAATGTAACACAATACTTGTAGCTGAT AGAGGCTCATTGCTATGAGAAGGAAAGGTAGAATTAGGGATAAACTGATG TGTAAGGAAAGGAAAATTGAATAATGGAAAATGGAGGCATTGCATAGAAG TGAATGTCATTGCACACTATGCACGAATGCTCAGGGCTAAAAATTGATTT GGTGGAATAGGTACCCTTGTGTAACTAGCCTACAAAAGTTTATGTTATAA CACAGTTTTTATTACTTTTCTGACACAAATATCAAGAATATGCTGTAATC TGATGTACAATAGTAGCTGAATTTAGATCAAATTGCCATATCAGCATTTT CATCTTTTCTTCCCAACAAAGGTTAAAGAATTCATGGACCAGTGTCTACA AACTGGAGGTAGGGGACAATCTATGGAAGTATTCAATTGTACACTTTCAT TAATGCCTTTCCTTAGATCCAATGAGACAGAAACCAATACATCCTCTGTA CAGCCATTTTTACTTCTTGTTTCTTACAGGGAAAGTCCTAGTACATGGCA ATGGGGGCATATCCAGAAGGTATGTATACTGTGCAGATACTTGTGTAAAA TTCATTATCATTGCATTGCATTAGGAACTTAAAGAGCTTTGGAAAGTCGT CTTTTTTAACTGAATGTTGAAATGACATAAGCATCTTTTAATATCCTCCA GAAGTTGCCCATATATTGTGTTACTTTTTATGCTTACAGTGCTGCTCTGG TGATAGCTTACATGATGGAGACATATGGAATGACTTATAGGTGAGTTTTG TCTCATAAGGCCACACCAACTTGATTTTATGGATGACATCCTCTGGAGAC CCCAAAACTAATGCGCGCGGGCGAAAAAAAAGAAAATCCAGCACAAAAAA AAATGCTGCTAAACCACAGGACTACTAGTACAAAGCTGGTATTGCGAACA ATACTGGTATTGCGTACATGTAGGTTGTCTTGTTCATCATAGCAGACTCA GCGCAAGTGATTGATTTTTAATATATTGACAAGAACGACCAAAGAAGTAT ACTATTAGAAGGTATTTGGCTCCAAGGACTGTGGATGATATATGATTGTG ATGAGAATACTTAGTCTAGTACTCATATACACCCATAAGGGCAGTTTCAA CATACATGGCATTGAACTCCATATTAAGCATTCCATAGTTTACGCTCACA AATCTCACTGTGAGACCTCTGCCAATCCCTCAATTCCTCTCCCATGTCTC TCATTATTGCCAAAGAAACGTGTGAGAGCCACTCTGGATAGGTCGTGTTT GAAATTGTCTGGGCGATTCTCTCGTACAACTGTAGAAACGCAAAATCCCC CTAGCCAACATCGATGGCATATCAATCCACAAATACGCCCCGGTTTTTCG ATAAGCCGGCACAATGCTAGCCTTTGCGGCAATCTAAGTCAGCAAGTTCC GGAGTTCTGTGTAGCCTTGGAGGAGGTGATTTTTTCTGTGTTTTTTTTAC AACAGGCGAAAATCAATGCGCGCGCGGATGTCATCCATAAGATTAAGATG GTGTGGCCTAACTACATATTATTAATCATTTTTCTAGACAAATGCAGAGA AGAGATCATCTACAAGTACAAACTCTGTATTTGATCACCCATGGATGCAT CTATTCTAACAAGATCTATTTAGTGAGAAATATGGATGCACTGAAATACA AAACAGGGATCTGTATACATTATATTTCTGTGTTTTTTGATGATTGTTGA TTGTTGAATGTTGTTGTGTATTGTCAGAGCTGCGTTCCATCATGTACAAC AGAGGAGATTCTGTATCCAGCCTAACGAGGGGTTTGCTAACCAGCTGATG GAGTATGAACCCATCTACATGGCCAGACTCACCGTCAGACCTGGGACCTG CTGGGGACAGAGCAACACACAGCTCCATGGTAACTCACGTCTCCATGGTA ACACTCATCTCCATGGTAACACTCATCTCCATGGTAACATACTGTCCATG GAAACATATGTGTGAATGGTAACATAATGTACAACTCCTTGGTGTAACAT ACAAGTCCTTGGTAACACAATAGTACAATATTGCTTGGGGATTTTTCATT AACTTAGAAAAGACATCAACAGGGGAATATCCACCACTTGCTTGCAAATA GGTTGGCTTTCCACTAGAGACTTTTCAATGAAATTGTGTATGTATGAGAT GATAAGAAAGTTCATGCATCTAAGTATGCATGAGTAAGGTCAAAGAGACA TAAACAAACCATTGTTATGCAAATTGACCGTCAGTGTCTGGACATGTATA AAGAATGGTTAAGGCAAGAACTGTTTGAAAGTCAGGTACTTAGAAATGTG AACTTCCTTATAGACATAATGAGGCGATAGATTGCAATATGAAAAATTGA CATAGCTACCTCATAATGAAGTATGAAGAGAAATTTTGTGTTATTGTTTT CCTTCATCTCACCGTTGTTCCCCCCCAGGTGGTAGGAAACGGAGCCTGGA TGAGGAGGCTGGGGAGGAGGCCATGGACCAGACAGGAGACCCTAGTCTGG ACCCACAGAACAAGTCACATCATCTGGACACATGAGGCCGGACAGATGTG CTCTCACAACTTACATATTCAATTTTGATTGACAGTACAATAATTACTGT AAGATTGGGTTTAAGGGTCCATTTTCTTTGCAATATCACTCTGTGTTTGT GTCCAAAACGTGTCTAAGAAAATTTGATGACTTGTGATGTCAAAACGTTG TTTTTTTCCTGTCATCATAAAAGATTAGTTTATGACTACACATATAGGGG CCTTGTAGTCCATACATACTTTAGTTTGGCAACTTGATATTCATTTCAAC CCTTCGTGTAATCTGCAGGGTTGTGTTTTAAGTCATGGAGAATCATAAAA GAATGTTGGTAGTCAATTCAACTTGTTGACAATGTAAGATATGTGGCTGA CATTACTTGTGAAACGTTGTTGATTAATTTTACAGGGACCAAGGCTACAA TTTTGGGTGCATATTTCTACATTGATTTTGCAATAATAATAGAAAGATTT TTTCCATTTCACCAGCAATCAGTAGTTCCGCTTTGAGTTAACACGTAAAT TCGTAACTGCAATGTCAGTGTAGTAGGTAGGGTGTACCATAATTATGAAA AAATAACAACATTGTCCAATGTGCAAAATATGTATGTTGTAAAGTTCACA GTATGCCCAAACTGCTACAGATCATATGTTTTTGTGTTGTTTGCTTTAGA GATGGATGGGTTACGGTGGTACAACACTAGAGAAAAGTGGAATGCCATGT GTATTAGGGTCGGATAAAATGTAACTTGGTTTGTTGTTCTTGTGAACGGT AGCTTTTATAGCCATGTGTCAATCAAGTTATTGATGCTCTTGTCTTAGCA TTAAAAAAGCATAACATTCTTATTGATATTACATGTTAGCTTCTATTCAC TGATTTGGTGAAAAGGTAGCTTATAAGTAGTAGGGATAGAAACTAGTGGT TTGTGTGTCAAACATGTATATGAACATATAATGTTACACGTGAAGATTTT CACAGATACATGTATATGTATATGATGAGGACCATATTGTTATCAGGGTC TACCACTGTGCCTTAGCTTTTCTTGTGTTACTTGTTTTTCACATTGATCT GTGTACTCTTATAGACGATGTTGCAATTTTTGTGAGTGTTGCACATGTCA AGTAGAAAGGGTTCTTGTTATGTTCTTGACATTTATGTAGCCATAGTGAC AGGCTCTTGGGCCATATCAATTAACGTGTGGTAAGAGAACTTAGGAAACC ATAGTGTACCAAGGCACCTGCCTATGGAAAGAGGTGGGGAGGGGGTCCCC TTACTTTTGGGAAGAGTGCCTAAAGTATGCATAAAATGATGCATTTTAAG CATGCTTTGTGCAAATTACTGATACACTATTCACCATCTGTACAGGGAAC GTTAATCCGTTTACGCCAAAGTGTTGAACAAAATTTATCCCTTGAAGAGA AATCTTTGGGAAAACAGGCCAATTGAGTACTATTACTAGATACCCTGTTT GAATGGATTCTTATCAAGTACTTATTTACAAGTGAGCTCTGTGTACAACT AAACACAAGAGGTAGGTGTGTACACATGTATGTCTGCATGTTTTCTGTGG ATGTCCTGATCATTTGTCTAAAAGCCTCGTGTGTTCAGTACTGTAGTTGC TAAGGTTCAACAACATTGTAAATATATGTAGCAACATCGCAATGGGTTAA CGTTGGTTATCCACTACGCATTGTAGAGATCATAAAGGAGTCAGAGTCTA CACTGAAATGTTATTGTAGATGTTTTCAGCAATATTTATATATCACTGTT ACATAACTGATGATGTTTCTTGTATGTGCAAGTATGGACTGAGATGAACA TGGCTATAACACAGTTGTAGGAAAGTAACCCCAGTACAAACAAACAAATG TATATCCTTTGAATACTGCAAAACAACACAATAAACGTAGTCCAGGCAAC TGTCTGTATGAAACTTTGCACTTTATTTCTAAGAGACCTCAAATACGTGA CAATGATTTATCAGCAAAATGTTACAATGAAATCTAGGCGGCCCCTATTT TGAGTGGTA

Coding sequence (CDS) from alignment at Sc0000086:406580..413988-

>Blg00336.0 ID=Blg00336.0|Name=Blg00336.0|organism=Branchiostoma lanceolatum|type=CDS|length=696bp|location=Sequence derived from alignment at Sc0000086:406580..413988- (Branchiostoma lanceolatum)
ATGGAAGGAATCGTCACATCATTGGAGTTTCCGGAAGTCCCAAATAGCGA
GGATGATACCAGGGACTGGAGCTACACCATGAGAAGAAGCATGCAGGAAA
TCCTTCCCAATGTGTTCCTGGGGCCATACTCTGTAGCTACAAAGAGAAAT
CTTTCCAACCTGTTGGAGTTAGGCATCACCCATGTAGTGTGTGTTAGAGA
TACCCTGGAGGCTAAGATTATCAAACCAAACTTTTCAGATCATTTCAGAT
ACTTGGTACTGGATGTTGCAGATAAAACCACAGAAAACATAATTCAACAC
TTTCCTAAGGTTAAAGAATTCATGGACCAGTGTCTACAAACTGGAGGGAA
AGTCCTAGTACATGGCAATGGGGGCATATCCAGAAGTGCTGCTCTGGTGA
TAGCTTACATGATGGAGACATATGGAATGACTTATAGAGCTGCGTTCCAT
CATGTACAACAGAGGAGATTCTGTATCCAGCCTAACGAGGGGTTTGCTAA
CCAGCTGATGGAGTATGAACCCATCTACATGGCCAGACTCACCGTCAGAC
CTGGGACCTGCTGGGGACAGAGCAACACACAGCTCCATGGTGGTAGGAAA
CGGAGCCTGGATGAGGAGGCTGGGGAGGAGGCCATGGACCAGACAGGAGA
CCCTAGTCTGGACCCACAGAACAAGTCACATCATCTGGACACATGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00336.0-exon-Sc0000086-1570713199:413343..413988Blg00336.0-exon-Sc0000086-1570713199:413343..413988Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:413163..413240Blg00336.0-exon-Sc0000086-1570713199:413163..413240Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:412694..412726Blg00336.0-exon-Sc0000086-1570713199:412694..412726Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:412269..412322Blg00336.0-exon-Sc0000086-1570713199:412269..412322Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:411849..411946Blg00336.0-exon-Sc0000086-1570713199:411849..411946Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:411448..411487Blg00336.0-exon-Sc0000086-1570713199:411448..411487Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:411274..411294Blg00336.0-exon-Sc0000086-1570713199:411274..411294Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:410781..410817Blg00336.0-exon-Sc0000086-1570713199:410781..410817Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:410620..410659Blg00336.0-exon-Sc0000086-1570713199:410620..410659Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:410399..410449Blg00336.0-exon-Sc0000086-1570713199:410399..410449Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:409260..409411Blg00336.0-exon-Sc0000086-1570713199:409260..409411Branchiostoma lanceolatumexon
Blg00336.0-exon-Sc0000086-1570713199:406580..408710Blg00336.0-exon-Sc0000086-1570713199:406580..408710Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00336.0Blg00336.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:406580..413988 -
Properties
Property NameValue
GeneIDBlg00336