Blg00335.0 (mRNA) - B. lanceolatum

Overview
NameBlg00335.0
Unique NameBlg00335.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:611449..615042-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00335.0 ID=Blg00335.0|Name=Blg00335.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3594bp|location=Sequence derived from alignment at Sc0000086:611449..615042- (Branchiostoma lanceolatum)
ATGGCTCACAACTTGTCCTTTGATTTTGAAGAGGAGAGACGAGGGATCAC TGCCCGAATGAAGGCGGCGATGGAAAGCATTATAGATAAGGTATAACTAT ATAACGTTTAATATCGTTTATCTCAGCCCTCCCCCCACTTCGACGTCTAA CTGTAACCGACTAGCGACTGTCATGATGTCACAAATTATGTAACCCGGCG AATAAAAGGTTAACTTGATTTTTAATGTTATCACCATTTCAGTACCAGAA TGTTGGTGAAGAAGAAGGTGACTTCTTTACAATGGACGACTTGCAGATAT GTGAAGACAAAGGTACGTATCATTGTGACAAGGCCCTGTATGACAACAGT GATTATTACTGTGTGTGTGTGTGTGTGTTTTTTTAGCTCTACAAGGAAAT TTGAGGATCGTATATAATCCTTTCCTTTATATGAAGGAACTGTAAGTTAA CATCAACTCTCAGTTATAGTTCTGCCTCATACGTACTCTAAAGCCACCAG GCTATTTTTATTGACATGAATTTTTTCCACCATATTGTCACAAGATTTTC CTATCAGTATCGATATTTTTAATTATTGTTGATAATGAAAATGTAAAATG AAATATCATTTATTGATTCCTCAGGTCAACTCAAACATCAAGAGGTAGCA CATTTTGGCTTCCTACAAGGTACATGTGTTTTTCTTGTCTTGCATTTTCC TATTCTATACTTCAATATTACTTGTCTAATTACTTTGATGTTGTGATATG ATGTTATTGCGCTAGAGAGTTATTTCAACATAGTATATTCATTTATAGAC TCATAATTTTATATGACGGGAAGTATTACTGTATAGAATTAGGAGTGTTC CTAAATCTATTCATGCCTGCATACCAATACAGAATGCACAGTCACCAGCC AATCATGTTGCCACTTACTAGTATGGTAAAGAAGCAACGATATTGGCTGG TTACTTTCCCTATAACAACAGGTGGGGGAACATTTGATTGGCCAGACCTC AGATACAGCCCAAAAGAGGGATAGTAGAATAATTGGCTGGGCGGCCTGAG GCCTGGCTTTGTACTTAGGCCTGGTAGGCCTACTAGTACTGTACTAGTAT GTGAGGATGCCATTTTACAGCCTAAATGATACATACTGTGATGTATATGT TCTGATGTGAATGGTACAGATGTAGATGTACATGTACCAGCCGATAGCCT GTATAGGATATCATAGTCATACATCATCATTGTATATTAAGTTCTGATAT CTATTTGCTTTGTTGCATTTGTAGCTGCTGCCTGCAGTACCAATGATGAT GATGATGATGACAGGGAGCCTGACAATGACGATGATCTTGAGGATGATGA TGAACAGCCATCTGCAGTAAAGATGCTGAGGGACTTTGGTAGTAGGGTGG GTTTGCTACATCAATCCTGATTGGAAGTGATACATTTACATTTAGATTAT ATTAAAAGAACTTAAAGAGTTCTATACGTGAAAAAAGATCACAATGTCTA TCATAGCTTAAAGTTAAACCTTGTATGTCTGTCAGAGCATACTATGATCT AGCGGATTAGCTTAGCAATCCTTTTATTGCAGATACATATACCAATCTAC CTGGTTGACTTCTCAACCCTGATGCACTTTGTCTTGTAACATTTCACACA GTCAAAATAGAGATATTTTGTAGCACAAATGAAGACATTCATTGTACAGT GAATTGTTGGTTTAAGATCTACTTTTCTTTTGATGGATAAATGACATGCT CATTATTTTCTGTGTAGATGGAGCACTCCATATGTAGCAAGATGATATGT GAGGAAGGTGAGGACGGTAAAGTCCGCTGGATACTTCAAGACGGTGAGTT CTGTGACGGTCCTATTGACTCACAATGTTGTGGATTTTATTTTAAGTTTT TATTGATGTACAAATGTACAGTTCAAGTAATACAGCAAAGGTCTACATTA CATCCTCAAAGACACAGTTGTATAACCCCTCGCATAAGTTGGCAAATTAT CCTCATTTTTCAACCACAGAATATTTATTGATATTATACAATACCAGTAA TTCATAGGGATAGTGGTTAAACTGTGTTTTAAGAATTTCAAGAATTCAAA AAGGCTCTGCTCCTAAGGCATTGTCCAAAAGAAATCCTTAAAACATGACA TTGTGTGCCTCTTTCTTAGATGTGGAGGAGGACATCCTGACAACTATTGG TGATAGCGACAGTGACCGAGGTGACATCAGTGGTGAGGACGAGTGGGCAG AGAGTGATGAGGAGGAGGATGCAGAGAGGAGATCACCAGTCGAGCACGAC GAACAAAGTCTTGAAGACAGCAGAAGCTCAGCTGGTACCGCAGAAAGTGA AGAAGAGTTGTCAGATTTAAGTGGTATAAGTTACAGAGAACCACAAAATT CTAACACATCAACCAATAGCATCAACCAAGATCACAAGAGAAACAATGGG TACAAAGAGTCCTTTCACAAAAGTAAAGAGTCTATGAATATGCCTACAAA CAGCTACAAAGACAACGGGAGCCATCAAAAAAGTCTTCACAAACCAACTT ATGTATGTACTAATGGAAGCAACAAAGACCACGAAAGAGACTATGACTAT GAAGAAAAAACTCTGCCAGTTTACAAAAGTAGAGAGTCAGCGGATATGCC TACAAACAAGTACAAGAACAATGGAAATGGGAGCTATGGAAAATGTGTTG ACAAACACAACAAAACAAGTAACACACCTACCACTAGCAGCAACAAAGAT CAAAAGAGAGATGATGGCTATAAAGAGAAAACTTTTCCAGTTCACAAAAG TAGAGAATCTGAGGATATGTCTACCAACAGGTACAAAGACAGGAAGGGTA TTGGCAAACACAACAAACCAAATAACATTCCTACAAATGGCAGTAGAAAC TCAGCTGCTATTGTGGAAAGTGAGGATGAACTCTCAGATTCAAGTGGTAT TGGTTATAAAGAACCGCACAAATATGACACATTCACAGACGCCAGAAGCC AAGATTACAAAAGAGACGATGGCTACAGAAAGAAATCTATGCCAGCTCAC AAAAGTAGAGAGTCTATGGATATGCCTACAAACAAGTGCAAGGACAATGG GAGCTATAGGAATAAAATTTACAACAAAGCAACTAGCGTTTATACCAATG GCAACAGAAGATCAACTGCAGTTGTGGAAAGTGAGGATGAACTCTCGGAT TCAAGTGGTATTAGTTATAAAGAACCACACAAATCTAACACAACCATAGA TGCCAGAAGCAAAGATTACAAAAAAGACGATGGCTATAAAAAGAAATCTA TGCCAGTTCACAAAAGTAGAGAATCCGTGGAAATGCCTACAAACAAGCAC AAGGACAACGGGAGCTGTAAGAAGAGTCTTAAGGAATACAAACCAAATAA CGTTCCTACAAATGGCAGTAGAAGCTCAGCTGCTGTTGTAGACAGTGAAG ATGAACTCTCAGATTCAAGTGGCATTAGTTATAAAGAAACACACAAATCT GACAACTCCACTGATACCAGAAGCAAAGATCACAGAAGAGACAATGGCTA TAAAAAGAAATCTATGCCAGTTCACAAAAGTAGAGAACCTGTGA

Coding sequence (CDS) from alignment at Sc0000086:611449..615042-

>Blg00335.0 ID=Blg00335.0|Name=Blg00335.0|organism=Branchiostoma lanceolatum|type=CDS|length=642bp|location=Sequence derived from alignment at Sc0000086:611449..615042- (Branchiostoma lanceolatum)
ATGGCTCACAACTTGTCCTTTGATTTTGAAGAGGAGAGACGAGGGATCAC
TGCCCGAATGAAGGCGGCGATGGAAAGCATTATAGATAAGTACCAGAATG
TTGGTGAAGAAGAAGGTGACTTCTTTACAATGGACGACTTGCAGATATGT
GAAGACAAAGGTCAACTCAAACATCAAGAGGTAGCACATTTTGGCTTCCT
ACAAGCTGCTGCCTGCAGTACCAATGATGATGATGATGATGACAGGGAGC
CTGACAATGACGATGATCTTGAGGATGATGATGAACAGCCATCTGCAGTA
AAGATGCTGAGGGACTTTGGTAGTAGGATGGAGCACTCCATATGTAGCAA
GATGATATGTGAGGAAGGTGAGGACGGTAAAGTCCGCTGGATACTTCAAG
ACGATGTGGAGGAGGACATCCTGACAACTATTGGTGATAGCGACAGTGAC
CGAGGTGACATCAGTGGTGAGGACGAGTGGGCAGAGAGTGATGAGGAGGA
GGATGCAGAGAGGAGATCACCAGTCGAGCACGACGAACAAAGTCTTGAAG
ACAGCAGAAGCTCAGCTGAAGCAAAGATCACAGAAGAGACAATGGCTATA
AAAAGAAATCTATGCCAGTTCACAAAAGTAGAGAACCTGTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00335.0-exon-Sc0000086-1570713199:614953..615042Blg00335.0-exon-Sc0000086-1570713199:614953..615042Branchiostoma lanceolatumexon
Blg00335.0-exon-Sc0000086-1570713199:614731..614800Blg00335.0-exon-Sc0000086-1570713199:614731..614800Branchiostoma lanceolatumexon
Blg00335.0-exon-Sc0000086-1570713199:614374..614418Blg00335.0-exon-Sc0000086-1570713199:614374..614418Branchiostoma lanceolatumexon
Blg00335.0-exon-Sc0000086-1570713199:613647..613768Blg00335.0-exon-Sc0000086-1570713199:613647..613768Branchiostoma lanceolatumexon
Blg00335.0-exon-Sc0000086-1570713199:613200..613275Blg00335.0-exon-Sc0000086-1570713199:613200..613275Branchiostoma lanceolatumexon
Blg00335.0-exon-Sc0000086-1570713199:612709..612873Blg00335.0-exon-Sc0000086-1570713199:612709..612873Branchiostoma lanceolatumexon
Blg00335.0-exon-Sc0000086-1570713199:611449..611522Blg00335.0-exon-Sc0000086-1570713199:611449..611522Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00335.0Blg00335.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:611449..615042 -
Properties
Property NameValue
GeneIDBlg00335