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Blg00319.3 (mRNA) - B. lanceolatum

Overview
NameBlg00319.3
Unique NameBlg00319.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:164282..173405-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00319.3 ID=Blg00319.3|Name=Blg00319.3|organism=Branchiostoma lanceolatum|type=mRNA|length=9124bp|location=Sequence derived from alignment at Sc0000086:164282..173405- (Branchiostoma lanceolatum)
CATGTCTGACAGTTGCGCAGTGCATGAAAAGTTCCCTTCTGTCAAACACG TCCATCAGGGAACAATTTCACTGCATAAATGACTCTATGTAATGGGGTAG GCTTGAGTCAACTAATTCTGTGAAGAAACCAGAAATGTGAGTTCTGTATT GTCCTGATGTTACAGAATGCCGTCTTGAAAGGCAATTAACAGTTGTTGTT TTCTGCCCAGATTGACAGTTCCCGCCCGCTGGCAGCCCAGGGTCCATTCC ACGCCATCCTGCACAAGCTGACAGATGTCATCATCAAGGCTCAGGAGGGC GACACACGCGCACAGGGACAGCTGCAGCAGGTGGAGGTAGGTGCACCTGT CAGCTTCTTCTGTGATAGACCTTGTACTGCTATATTTTGTTTAGTATGGA AAGTCTACTTGCCTAGTAGGTTATACTTATACTTAGTCTGGTATGATCTG TTGTACATGTGGAAGCTACACTGATTGCATATTGCACAATTTAGCAAAAA TATAGGTACAGAAGTATTAATACCTATTATAATTTACTCCTTAATGACAA TGTATTTGTGTAGATGGTCCTATTGTGTAACAGCTAGGTACTACAAATTT TTGGCAACACCTTTAGGGGTGAAGACTCACTTCCTCCTCCCAAGGCTTTG ATTTCTCTATTCTGCACTTTCACTTCTTCAGCACAACCACACTATATTCC TATGCAGTCCTTTCCCAAGCTTGTGTCTTGTTTGTGAAATGCCTCCAGTG TTGTCGATATTGTGTTTTAGGACTACCTGAGTTCCCATCCTGAAGTACTG GTTGTGGATCCTCTCAGTTCTGTTAAGAGTCTCATGGACCGTTGGACGGC CTACCATATCATACAGGAGTGTATTCCCAAGGACAAGGGTAAGGGCATTA CTGGCAACATCGCTGTTCTAAAACTGTCTTGGCTACGTTCTAAGGAGCTA AAACAGCATATCGTCTCTTGGAAAGCTTTCACTTTTTAGGCTATTTGCAA TTACAAAAGACTGGAGACAAACAAACAAGAAAAGCATGTAAACCCTCTTT GAGTTATAGCCCAATGAAGAAGAAATGTATATTTGAATAGGGTGTGCCCT GGTGTGAGTAGATCCACCATTTGATGTCTGGTATTAAAGACTGTAGTTGA AATGCACCATGACATTGTATATATATATATATATAACATATGTGCAAATA TTTGATATGGATGCCTTTCAGGTGAGGACATTTTCATGCCAGAATTTGTG GAGATCCAAACAGCAGACAGAGCAGAAATCTTGCAACTACTACAGGATGG TGGTGTCCACTTTCCATTTGGTATGTATGACTTTTTGAGACTACATGTAT GTAACTGACAAGTTTATTCATTCATCATTTGTTGTATGCATCATGATTAT CAGAGGTCAGAGGTCATCGGCGCAGCGAGACACCGTCCATTTCAGCTCCC TCAATCTTTTCGTTTAATCGCAAGTATTACTTTTCGTTTGAACTTATTTT CCTTTCTTTTCGTTGGCCCAAGCATACAGTTATATATGCGACGTTATTAT AGACAAACAAACCAAATTGAGTGAGAAACAGAGCAGTAAAAGTAAGCTGT GAGGTGAAGCAGCGTGGAAGGTGTCTTCGGCCCAATTATCTTACACACAT TCCTAGAACACTTGTCAGAAAACTAGCGAAGTATTATTAGAACAACGGTA TACTGTTGGCAAGTCCATAATATTACCACATTGTTTTGTTAGTTATTATG CAAGTTGAATTTGACACATGTTCTTATAGGGTTAGATAAATTCTTGGCAC CAAACACACGTCAAGCTCACCTGTGTACGTGCTGTTATCTAATTAAGGCA ATTATCTGATTAGAAACACCTGTTTACATGTAACACCCAATCAGGATGCA GCCAATCAGTGTGTATTTCTGACTGATCGATAATCAGATTAATTACTATG AACCTGAACCAACTATTCTCGTTGTAATAGAGAAAATTGCCTGGAGTCCT CAGTAAACATGAAGTCATTAGATAAGTTGTTAGCTTTCGCACAGCTTTGG GCAGTCATTACAATAGCTGTACTGCCAAAATCTAGAAGCGCACAGCAATC AAGACAACAGCTGGGAGGAGTGAAGACTGGCACGTGGCAGATAGCACCAC ACCGACCATCCTCACTAGGACTATGTGGTATCTACACAATCAGCAACATC AATCTAAAGACGGATGGAAGCTCTCGTAGTGCTGGTGACAACAACACTAG CGACACTGATCCGTCCTTCCTGATGGCATCATTTACCCTCTTGCTGGCTG GAGACATACACGTCAACCCCGGCCCCATTGATCTTAACCTGGCTCGAAAA GGACTACACGTGGGACATATCAACGTGAATAGTTTACGTAACAAAGTACA CGAAATTGCACAAGTATTAATTGTCAACAACTTTCACGTACTCGCAGTAT CCGAAACACACCTAGACAACAGTGTACATGATGGTGCGCTCGACGCTGGC GAGTACACCATCATAAGAAGAGACCGAGATAGTAATGGAGGAGGTGTAGC CATATACATCAAAAACACTATTCCCTTTAAGAGACGTCATGATTTAGAAA TTCCAGATATCGAAATAATCTGGGCACAAATTTACCTCCCATACATAAAA CCTATACTTATAGGGTGCCTCTACAGACCACCAAGTGCAAACACGAACTA TCTACACAACATCATACAAACATTTGATACAGCTACGCATGATGGTAACG AAGTACTAATATTTGGAGACTTTAACATAAACTGGGCAAATTTGAGTTGC TCTCTCAGAGGTAGACTAGAATTGGAAGCGACGGCTTTGAACCTCAACCA AATGGTAAAACATGCGACGAGAATTGCCAAAACAGCTAACGGACCAGTAA CCTCTTCATGCATAGATTTAATATTTTCTAATATGCCAGACAAAATCACA AACACATCTTCAATTCCACTAGGGTTTTCAGACCATAATCTCATATATAC AACTAGGAAAACTAAAGTACCAAAAGGACAACCTACAGTGATTCTCAAGC GGTCCTACAAGAAATTTGACCAAGATCATTTCTTACATGATATTGAGACC GTGCCATGGCACGTAGTGGAAAGCGAAAACAATGTAGAAGACGCCCTAAC ATGCTTTATGAACATTTTTACCGATATCATTGACAAGCACGCTCCGGTGC GTAAACGTTCAGTAAGGGCAGCGCCGGCCCAATGGGTTGACGGTGACCTT CGAGAACTTATGCACCAGAGAGATCAGGCGAAACGCAAAGCTCAGGCATC TAAAGAGACAGCCGACCACAAGGCTTATAGAAGACTGCGGAATATAGTAG TTCGAGAAAAAAGAAAAAGGCCTTCTACACACAACAGATCGACCTACATA GTAGGAATAATGACAGCAAGCGACTGTGGCAAACAGTAAATGGAATGCTG GGTAGAAACATGACAAACTGCAAGTTATCCAGAATAGAGCAGCTAGGCTG GCAACAGGTGCATGTTTTGACGCAAACCTAGATGAACTACATAATCAGTT AAACTGGCCCTCAGTAAAAGAAAGACTTTTCACAGGCACTATCAACATAT TCCATAAAGTAGTAAAGGAAAAACAGCCAAAATGCATTTTCAGTCGTTTA AAAACAATTAACACCGCACATTCTCACAACACCAGACTAGCACAGAAAGG AGCATTCCTGCTACCCAAACCCAGAACTAATGCCATTACTCGAACCTTCC TATACAGAGCTATCAGAACATACAACACTCTACCAATTCACATTACATCC TCAAATCCACGTGCATTCAAAGTAAAAATCTGGTCCTGGACAAAAACTCA AAGACATAAAAACTCACCTATCAGTTCATGGTGGTAAACTTGACTATAGG ACATCCCTATATTTCATGACCTCTGACCTCCACAATATCCAATATATGAT AATATTATGTACATGTATGATATAATATGATAATAATGTTTCTGTTTATG TTAATTGAATGAGGATAATGATGAATTGATTGATTGACGTTATGAGTAAT TTAATGTATTGCATAATATGATAAGGTTAAGAACGTTAATGATTGATTTA TGCTAGTTGTCTGATCAACATTGTCTGTATAATTTGTTGTTATGTATTTT ATTCGATTGTGTGTAGAGGACTCCAGGAAGAATAGTTCAATGTAACTAAT GGAGATTCCTAATAAACAAACAAACAAACAAACAAACAAACAAATACCCT AATGTCTTTAATGACTTAATTTTTTGTTGGTTACAGTGTGCAAGAGATCT GTGGCTCAAGGATCAGCTTCACATGAGGTAATGATTCCAGTTTCCCTAAT TGAAATATCTATCTCAGTGATTCTCACTGTACCTCATGACATTTTGTATG GTCAATATGATGGGAGAATTACCAAAATGTTAATTCAAACCTTTCTATCC TTCTACCTTAACAACTTATTAAAGTAAAATTTGCAGAACTTTAAGGAAAA ATGTGCAGAATTAGTCAATGTGTGAAAAAACAAAGCAGTAATTTCTAACA TTTAGTTCCATATATATACATGTAGGCATAAATGCTGGAAAACTTAGTGC TTACAGTGTACATGTAATTCTAAGGCTACTTTATTAAAGCCATAAACTGG TTGGTGACAAAAGCAGGCTAAAGGATAGGATGGCTCTAGGTAAATTTACC TTTATATATATATGATTATTGATTTAAAAGATTTCCAAGTTAAAGAATGT AGTAACAAATAGGCTACAAGTTCTGCAGCTATGGTATTGAAAAAATTCAA TATTGTGACTAAATGTAAGCTGACTCTATGTATACATGTAGATGTGTTCA CATAGAAGTATCCCTTAACTTGCAGATGGCCATCATTTTCAATGCTGAAG GGTTGAAGGACCTTCTCAGTCCACCATGTGTGGCTCAGAACTTTGTCAAC CACAATGCAGTCCTTCACAAGGTAAGTTTTCTCCAAGTTTTATAATAGAT AAGTGCACAAATTTCATACATACACTGAAGGGAGCCCTTAGATGCCTGAG CCACTGAAAAATTAACCCATTCGGTTGAGACACTATTTATTTTTATACAA TTATAATTATTTTATCATTTTTTATAAAGTGTGATATCACATGGACAAAT AGATAAATGTGATTGGTAGAATGTTCATGTACAATGATAGAGGTCGCACA CTCAGGCATTTGTTTACTGTGCATGATTAAGATGTTTGTTCCCATACACA GGTGTTTGTGGTGGGCGAGTCTTATTTTGTTGTGGAGAGGCCATCTCTCA AGAACTTCTCAGCAGGCGGTGAGTTCCTATATGTACCCTGAGACATTTGG GACTACTTGTACAGACATGTTGACATTGTGATACATCTATTATAGATTGT TGTGTATTTGCATTGTCTTATAAAAATGTGACTGTTGTAAACTGTGAAGG TGTGTATGGTGATGTAGCATATCAATGTGTATAAATGTACTCTAGATGCC TTGTTATTGTAAACGAAACAACAAAGATTATAAATAGCTTGCAGGTAATG TTATACATACCACGCACAGTATACCTTTTTTTATTGTTATAGTATTGTTT TTTGTCATGTTCTGACTGTTTAAAATTGTGTTTTAGATCAAAGCACAATC TACTTCAACAGCCATGATGTTTCCAAGGCTGGGTCTTCTTCATTCCTCAA TCAGGTATAGAGTACATTTGTACATGCTTCCTCAAGACTCAAGTTGAAGT TTTTTTCCATGCATTGTTAGGCCCCCTGCAACAGAGACTAATATAGAATG GCATGAAAGATTTGCCATAGTATCTTACAATGTATTACAAATAACTTACA TAGTACAAATTGTCGGACATGCTATTCATTGGAAACTACTTAATCCTGTA ATAGTCGTGATTCTTGATGTTATAGGATGATGTACAATGGAGATGAATTA CCATCTACGATATATATTTTGCGGAGAAAAAATTCACAATGGTACTGCCA ACATGTGTCTATGTGATACTGTGTCAACACCTGTTCATTCATAATCCACA GTTGGACAGTAGGGACAAAGTGTCATGCCCGTCCCTCCCTCTCTGCCGAG AAAAGTTCGAGCACGTGTTGACCAAGTTACGGCAGCAGCTGGGCATCACG CTGTTCGGCGTGGACATTATCGTGGAGAACAGGACCAGTCGGCACGCTAT CATCGACATCAACGCATTCCCAAGTCAGTCCACCTTTACTTTTTGTCCTC AGTATCATTAGTAATTGATCCCTGGTCATTAAGACTGAGTGATACTTTAT GATATGATATTCAATATTCAACTACCATTGAACTAGTGTTTGGTCCTAGA TACCAAAGAACGATTTAAGTGTCTATGTGTTGTCTATTCTTTGTTGTTAC TATTGCAATTTTTGTCCAATTACATATTGCTCTATGCAGATAAGTAGTTC TACAGTATTCTATGTGTTTAAAACTTAGAAAAGGTACATATACCGAAATT GATGTAAGATGTTGACTAAACAAAGTGTTTGTTTTTCCTGTAGGTTATGA CGGGGTACCAGACCCTTTCTCTGTAGTGGCGGACCACCTGCAATCGCTTT TGTCTCAGCACTGTGGCGTGTCAAGGGCCACGGTCAATGCCAACACATGC CACTGCCAACCGAACAGAGCAGAAGTGTCTGTACCAGATTCAGTAGGACC AAACAAAGACAGTACGACAGTAAGGACAGAGAGTGCCAACAGCAGTCTTA TCATGCTGACCAATGGGACGGACTATAACAATGGGTCAGGTTTTGACTCT TCAAAAATTACCAATGGGGAAACATTGGCTCCTCCGAGGATTGATGGAGT AGGGTTGACTGAAATTGTAAGTAGGAAGGATGTACCCTATACCAAATTTG GCAAGGGACAGGAGGTGTACTTAGGAGGACTGGCCAATGGGAATGGCCCT GCATGCGTGACAACAAGTGCCGATGAGGCCCAGTGTTGTAAACAGTTGAC CAATGGGGAGAAACTGGGGTTTGTACGATTAGCCAAAGTTTAGGATGTAA AAGATGCATAGCAGATTGTGCGAGACTGAAATCTATTTGTTTTGTGATCA CAGCCACTTAATTGCATGTGGAAGAATGTCCTACTTTTGATTACAGACCT TTGAAGCTCTATTTACTTTTATCCAAACATGTTACAATCTCATCATTTCC TTGCTGACCAATCAGAAAGCAGCACTAAGCCCATCAGAAATCAGTAGTGA TTAGCCAATCAAGTGTCCTATTACAATTGTACCTGGCCAATCAGGTGGCA GAACATACATGTATACATCTCAGTTGACCAATGACAATGAGCATGACAAT ATCAATTTTAAGCATTGAAGTTACAAACCAAATAGTAAGCATAAAGATGA TGCTTATTTTTTGGTTATATTAAACATAGTCTAAATGTAGTAATGTTTGA ACCATCTATTCACTTTGTCATAAATTATTATAAATGTCATAGGATAATGT AACTGATGATTTTTTTGGTAAGATAATTGTATGAAATAGGGTAAAGTGAC CAACTGATAGCTAATGAACAGTACCCACTGCCCCAAGTTATTTGGAAATT AACTTTTCAAAGATACTGTAAGCTAGCCAACTACAACTTGGCATCTAATA TACATATAGGCTGTCCTTGGTTTTAATTCCAAATGTGCCCCATGGAAAGT TGTACATGTTGTTGGCCTGGGACAGTGACATCAGAATACTATATTGTTTG TAAACTTGTGATATTTCGCATAATAGTACTAGTGTTTGTAAACAAGCAAT AGCTTAGCTGAAAGTAATTTTGAAGCTAGCTGGCTAGTAGTTACTGTAGA TATATCCATGTTGTAATTCAGTTTCAAATTGTTAGTCTTTGTACACAAGT AACAATTACATTGGACAAACAAAGACCAGTTTTGGTTATCTTCAATTTTC TTTTTTTTTCATGCATCACAAGGTTTTTTTGTACCAGTATAAGATTTATA ATGTTTGAAAATGGGTTATATTAGCTTTGATATATGTTTATTTGTTGTTA CATAAATGTACAACAGAAACCATAGCAAAATCCTGGAATCGTCTGAAAAG TATCGGAATTTCACTTTTTAGGTAAAATATTTGTATCACAGACTACAAAT AATGTTTCATGATGAAATATTGCATATGATAGTCTACAGGCACATCCCTG TTGACCACCATTGCCTGGTGTATGTATGTTCTCAACTTGCTCAACAATCT CAATGTTTTAAACATAAAGAAACAAATATTTTGGACTATAGTCAGTGTAT TTGTAGAAGAAGATTGTGAACTAACGTTGTTAACAAAGTACCAATTTGTG CCAACTTGCTGCTAAACAGGCTTTCAGCTGGCAAGTCCAGAAAAGACAAC CACAAAAATGCTCACTTTCGTTATTATTTGGCATAACTGATCAAAACGTG AAGATGCTTGATTTGCCAGTTCAGTAATTGTCATCAATCCAGCAGCAATG TTATTGATGTTCTGTAATACTTCAGAAAATGGAACAAAGAGTATTGAAAT ATTAACATGTGTAGCCTATGAATTGTGAAGTACATGTTTGTGTTTTCTTG TTAGGTTATAGGTTAGACATTTTTCATTTGATAGAAGAATATCAATATTG AATTTGGAATGGTGGAGGGACACAGGCTTTNGACACAGGCTTTCTGGGCC CCCCCCCCCCCATATTATTGAACGGTATTGCCATGTGTCTTGAATGGGTT GTTTACATGTACTTCTTTTGACCCCCCCCAAAAGAGAAATTTCTCAAGAA AATATTTTATCAAAACTTCTACATTTTTCTTATCTATGGAATGAAAGCTG ATGTTAAATGAAATGGATATGATTGAAAATTAATTTGAAAATACCAAATG TTACTTGAACATTCCTATCTCATGAGGGTAGGTCCAAAAAGTATTGTACA GTTATGTCATTTTACTAATGGGTTTGTGTAATGTTAACAGGTAAGACATT TAACGTTATATTGTGTTGTGCTTGTGTGTTGAAGTACCTGTATGACAGAT TAGTACAAAATGAAAAATCAAAATTGTTATACTAATTTCACATCAAATAA GAAATACAACATCAATAACATCAA

Coding sequence (CDS) from alignment at Sc0000086:164282..173405-

>Blg00319.3 ID=Blg00319.3|Name=Blg00319.3|organism=Branchiostoma lanceolatum|type=CDS|length=1098bp|location=Sequence derived from alignment at Sc0000086:164282..173405- (Branchiostoma lanceolatum)
ATGGACCGTTGGACGGCCTACCATATCATACAGGAGTGTATTCCCAAGGA
CAAGGGTGAGGACATTTTCATGCCAGAATTTGTGGAGATCCAAACAGCAG
ACAGAGCAGAAATCTTGCAACTACTACAGGATGGTGGTGTCCACTTTCCA
TTTGTGTGCAAGAGATCTGTGGCTCAAGGATCAGCTTCACATGAGATGGC
CATCATTTTCAATGCTGAAGGGTTGAAGGACCTTCTCAGTCCACCATGTG
TGGCTCAGAACTTTGTCAACCACAATGCAGTCCTTCACAAGGTGTTTGTG
GTGGGCGAGTCTTATTTTGTTGTGGAGAGGCCATCTCTCAAGAACTTCTC
AGCAGGCGATCAAAGCACAATCTACTTCAACAGCCATGATGTTTCCAAGG
CTGGGTCTTCTTCATTCCTCAATCAGTTGGACAGTAGGGACAAAGTGTCA
TGCCCGTCCCTCCCTCTCTGCCGAGAAAAGTTCGAGCACGTGTTGACCAA
GTTACGGCAGCAGCTGGGCATCACGCTGTTCGGCGTGGACATTATCGTGG
AGAACAGGACCAGTCGGCACGCTATCATCGACATCAACGCATTCCCAAGT
TATGACGGGGTACCAGACCCTTTCTCTGTAGTGGCGGACCACCTGCAATC
GCTTTTGTCTCAGCACTGTGGCGTGTCAAGGGCCACGGTCAATGCCAACA
CATGCCACTGCCAACCGAACAGAGCAGAAGTGTCTGTACCAGATTCAGTA
GGACCAAACAAAGACAGTACGACAGTAAGGACAGAGAGTGCCAACAGCAG
TCTTATCATGCTGACCAATGGGACGGACTATAACAATGGGTCAGGTTTTG
ACTCTTCAAAAATTACCAATGGGGAAACATTGGCTCCTCCGAGGATTGAT
GGAGTAGGGTTGACTGAAATTGTAAGTAGGAAGGATGTACCCTATACCAA
ATTTGGCAAGGGACAGGAGGTGTACTTAGGAGGACTGGCCAATGGGAATG
GCCCTGCATGCGTGACAACAAGTGCCGATGAGGCCCAGTGTTGTAAACAG
TTGACCAATGGGGAGAAACTGGGGTTTGTACGATTAGCCAAAGTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00319.3Blg00319.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00319.3-exon-Sc0000086-1570713199:173070..173405Blg00319.3-exon-Sc0000086-1570713199:173070..173405Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:172518..172635Blg00319.3-exon-Sc0000086-1570713199:172518..172635Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:172086..172184Blg00319.3-exon-Sc0000086-1570713199:172086..172184Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:169079..169119Blg00319.3-exon-Sc0000086-1570713199:169079..169119Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:168435..168530Blg00319.3-exon-Sc0000086-1570713199:168435..168530Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:168088..168154Blg00319.3-exon-Sc0000086-1570713199:168088..168154Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:167702..167769Blg00319.3-exon-Sc0000086-1570713199:167702..167769Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:167183..167354Blg00319.3-exon-Sc0000086-1570713199:167183..167354Branchiostoma lanceolatumexon
Blg00319.3-exon-Sc0000086-1570713199:164282..166862Blg00319.3-exon-Sc0000086-1570713199:164282..166862Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:164282..173405 -
Properties
Property NameValue
GeneIDBlg00319