Blg00317.0 (mRNA) - B. lanceolatum

Overview
NameBlg00317.0
Unique NameBlg00317.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:692739..697072+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00317.0 ID=Blg00317.0|Name=Blg00317.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4334bp|location=Sequence derived from alignment at Sc0000086:692739..697072+ (Branchiostoma lanceolatum)
ATGTACATGTTTCCAGGCGAGGACCTGTCATTGTCCGAAGGTCAAGTGCG GACGAGGCGGTTCGTTTTCAACAGACCTGTTGACGTCAAGTATTTCCTCC ACACACGTCAAAACAGAGGAACTCCAACAGTTCTGGAGGACAACAACCCC GACGTGAGCGGCACCACCTACCGCAGTGACCGCCCAACCAAGTTCATCAT CCACGGGTTCCAGAGTCGGGGTGATGCTCAGTGGATTCTGGATATGGCCA ATGCACTGCTGGAAGAGGTAAGTCAGCGATACATCAACCGATCAATCAAT CAATGTTTAACCTGCATGTAGTAGTGTCAATTTATTTTATTGATGCAGTT AACAGTTAGCAACTGAAGAAGCTTAAGCTTGACGTTTCTAAATGTGTTCA CTTTGGAATTCCTGTGCTTGACCAAACAAACTTAACAAAATCAAAAATAG TTAGTATTTTTCGACGTTGCCCTCTTAACAGGAGGATCTGAACGTGTTTG CTGTGGACTGGCGGGAAGGCGCCAGCCCAGGGCTCACCGGAAAGAATTAT CTCCAGGCGAGGAGGAACTGCCGGAGGGTTGGGCAGGTGAGCAGATTTAT GATGTAACATGTTTTCAAAGCGGCGTCATCCAAAAAACGCAAAAGCCATT TTGTGACAACTACAATGCAACGTTTGCTAATGATATAGCTGACTTTTGCA TGCTACTGTGATACAAAGAATAGCAGTCAATACTACAGAGCTGAAGAGGT GGCAGTTTGATACATGCCTCATTCAACAGATGTTTTTTCCTAATTTCTAA AGACTATTGCAGAGTTTGTGCGCCGTCTGCGACAACCCCAGGACATGACC CACATCATCGGCCATAGCCTCGGAGCTCATGCCGCGGGGTTCGCTGGGAA GGCTACACAGCCTGGACTCACGCTCGCACGAATCTCCGGTATTTTCCATG TCGTTGTGTATTTGTACATTGCACCTTGTGGATATCGACGTTACGTATCA TCGGAAATATCTTCTATCTGAAGAGAATATCTTTCCCTCTATCCCTAAAA AACTGGTAGCGAAAGTTATTTTGATGGTTTACTGTCACATGTCGCTTTGT GCATAGGTTGTTAGAAGAAGTTCTGTTAGTTTCTTGATATTTCTTTGATC ATCATAGAAATAATTTAAGACGAATATGCATTTTTCATAACATCCATATC AGGACTTATCACTTGGCTTTTTTTAATTATTATGTGTTGTGTTATGTTTG TTACCTTCCGCTAAGAAGGTTTTGTTTTCTGTTTTCTTATCATGAATTTG TTTTCCGACTGTCGTCCAGCTGAAGCCTGCTATGGGTTACATCATTTTTT CACAGATCTAAGTCCGAACGATGGCAATGTTGATTGGCTACTTAGTCTGT GACCATTATTTTTCTGACGCTATCATATCCGCCTGTAGGCTTAGACCCAG CAGGCCCAGGGTTCAGACGCGCTCGTGCCAGGGACAGGTTGGACAGAGGT GATGCCATGTTTGTTGACGTCATCCACACCGATATTCTCGTGTTGGGGAA ACGAAAGCCAGTCGGACACGTGGACTTCTACCCGAACGAAGGATGGCTCC AACCCGGGTGCAGACGTGAGTGAACGTGATTCTAAAAACAACGTTTTTCG CAGTGCCAGGTTAACGTTATGATTTGTAAGATTCGATGTCCAGTAACATC AGAAGCACGGAAGGGTGTATATTTTGTATAAACGTCTATGTTCATTAAAT GATAATATGATGGTTGCTTGTAATCAGGAACTGCTGTATTTTAGTGTTAT TGGTGACACAAGCACTTTTAGTTAGCAACTTCGTATGTCTCTGGTATAAT CCTTTTTAAACTCAGCCACAGGGATCATGCGCGCTTCGTCGCTTTTCATA CTGCTTCTGTCAACATTTCGGCTGATCTTTTGCTTCATTCTCCAGGGCAA TATTGACTTGTTCTACTTCCCACTGCAGCTAGGTGTCGCTGCAGTGGGAA GGATGCGGTGCCAAACGTTGGCGGGTGAATGTCTCCTGTGTACCAAAACG TCGCGTTGCTAGCCACCCAAACTCGGATGAAACGATTCACGGCTGTTTTT CGGTATCTCTGCCCATTTCTGATGTTTTTGTAGGCTTCAGCTGCAGCCAT GGTCGGGCACCCGAGTTCTACATCGAGTCTATCAGCTCGGAGTGCCAGTT CCAGGCCTACAGCTGTCCGGACTGGGAGACTTTCAACAGAAACCGCGGAC AATGTGTCCCCTGCAACCATGCCGGTCTAGTAAATGGGTAGGGCGTCACC TTCGCTAAAAAGGTTTACATTTTTGGTAGCGTCTGTGTGTGTCAATTGAT TTGTTGTTTGATAACATAGCTCAAGAACGTCTGACGCAACTTCGTGAATT AATTGTTATCGAATTCGGTACACAGCTTTGTTTAAGATTAGACGTCTTGC TCTTGATCAACGTGGCTGTTTGATAGTAGTGTCTTTCTTTCACAGCGCAT GCTCCATGATGGGGTATCCCTCCATCAACTATCGTGACTCAGACTCACAA GGCAGCATGTACCTGGTGACAAGTACGGACCTTACACCCCACTGTAGTAA GGAACTATCTTTATTTCATTTCAAATGTTTATCCTGTAGGTTAGGGACGG AAACAAATAATTTTTATTGTAAGTGTAACGTTACAAGAGATAAATATCGA CAGAGAAAAGACTAGTTCTAGGTTTCCTCTCGATTCACATAATGAAACAT TTGTCACCACCCCTATGAACAACTTCACAAGAACGGTAATTCCTATACTT CCTTCATTTTGATATCCTCTAGCCTATAGTATAAGGCTAGGATTCCCGAG CTTAAACAGAGTAAAAACATATTGCACATCACAAGGCACACACAAACATA CATGCGCATTTAAACTGACGTGTGTATAATTGACGAAGAGACGGCCACGT AGATACTGAGTGAAGACAGACACCGAAGAGTTGTTGTGGCCGATGGAAGA GAACTTTCAAAAGTCTAAGTTACTCTCTTCACTATATCTCTTATGGAGCA CATTAAACGGTACCTGTTTTCATATGTTTCGCAACAGGACGAATTCTGAG AAATGGATTCATGATACTGCATTCTTCAAGATCAGTCATTTAGGGCACTG GTGTGTCGGACACGTTTTACACTGTCATGTACATAGTGCATTTCTAGGAA ATCCATCTAATCACACAAACGGAATTGACAAGCGCAATATTACACACGTG TATCAGGGACCCGTGGACGCCGTGACACAGAGAGCGGTGAGAGTGAACAG TGTGTGCAGTCCCTGGGTACAGACATGCGGGAGGAGATACTGGACTTAGT GGACTCCATCACAGACCTGGGGCAGATGGGGATGGAGGAAGATTTCTGCA GGTAGGTCCTTTCTCTTATTTACTTTTACTTTTCCTTCCGCTTGTACCGT CTTTTGTACATGTTGCGGTGAGTTGTAATTTTTTTTTCCGGTTGCAAGTT GGGTAGCGTGGAATTGATGCTGTCATGTAGGAATGAAGTCATTTATATTG TCTTTTATATTGTTAAGTCGCAAATATCAAGTACATGTAATGTGAAACCC AGTCATGAACGTTCTATTTTCACGAAGGAAAACGTTGCAAAAAGTGCCTC AATTCAAGTTAATGCTCTGACGAAGTAGTCCCGTTCAGTGCCTAATACTT CATCGACACTCGTGTCGTTAAGAATCTTTTCACGTTGGTTTAATATTGAT CTTACATATATATATACATTTATACATATTTACAGTATGTATTCCAACAT GGAGACTGATGTGGCTAACATCACAGCATCGAATCCCAACTGTGGACCCG AGGATATTCCTGTTATCCTGGAGTACATAGCAGGTACGTTATGTAAATCA TTCCGGCAGTTCAGGGGTACGGTGGCCCGCTAGGACAACTTTCGACGAAA GCCACGATACAGTGGCGGATCGGGAAAACTGGGACAAAAACGAATTAGGA CTAATCGGTAGATTGGTGAAAGAAATTTTTCATAGGTAGCCATATATCTA AAGGTGCAACGTTACACGAATTCAATACCATGATCTTGAAACTGACCAAG CTATGTTGATTTTGACATTGTAGAAATGAATGTCACTGTGTGTCAGTCCG TAACATCAAGATCTTTCGTCCTACCGCAGACAGCAAGTACGACATCGTGA TGGCCTGGGCGGAGGACAAGTGCCCCGTGAGCGCCAGTGATGGCGGCTCC ACTCTCCCTTCGGCAACCATGGTCATCGCGCTGCAGCTCATAGCGGCTGT CGCTGTGGGGTGCTGGCGTATGGAACTCCCGTAG

Coding sequence (CDS) from alignment at Sc0000086:692739..697072+

>Blg00317.0 ID=Blg00317.0|Name=Blg00317.0|organism=Branchiostoma lanceolatum|type=CDS|length=1338bp|location=Sequence derived from alignment at Sc0000086:692739..697072+ (Branchiostoma lanceolatum)
ATGTACATGTTTCCAGGCGAGGACCTGTCATTGTCCGAAGGTCAAGTGCG
GACGAGGCGGTTCGTTTTCAACAGACCTGTTGACGTCAAGTATTTCCTCC
ACACACGTCAAAACAGAGGAACTCCAACAGTTCTGGAGGACAACAACCCC
GACGTGAGCGGCACCACCTACCGCAGTGACCGCCCAACCAAGTTCATCAT
CCACGGGTTCCAGAGTCGGGGTGATGCTCAGTGGATTCTGGATATGGCCA
ATGCACTGCTGGAAGAGGAGGATCTGAACGTGTTTGCTGTGGACTGGCGG
GAAGGCGCCAGCCCAGGGCTCACCGGAAAGAATTATCTCCAGGCGAGGAG
GAACTGCCGGAGGGTTGGGCAGACTATTGCAGAGTTTGTGCGCCGTCTGC
GACAACCCCAGGACATGACCCACATCATCGGCCATAGCCTCGGAGCTCAT
GCCGCGGGGTTCGCTGGGAAGGCTACACAGCCTGGACTCACGCTCGCACG
AATCTCCGGCTTAGACCCAGCAGGCCCAGGGTTCAGACGCGCTCGTGCCA
GGGACAGGTTGGACAGAGGTGATGCCATGTTTGTTGACGTCATCCACACC
GATATTCTCGTGTTGGGGAAACGAAAGCCAGTCGGACACGTGGACTTCTA
CCCGAACGAAGGATGGCTCCAACCCGGGTGCAGACGCTTCAGCTGCAGCC
ATGGTCGGGCACCCGAGTTCTACATCGAGTCTATCAGCTCGGAGTGCCAG
TTCCAGGCCTACAGCTGTCCGGACTGGGAGACTTTCAACAGAAACCGCGG
ACAATGTGTCCCCTGCAACCATGCCGGTCTAGTAAATGGCGCATGCTCCA
TGATGGGGTATCCCTCCATCAACTATCGTGACTCAGACTCACAAGGCAGC
ATGTACCTGGTGACAAGTACGGACCTTACACCCCACTGTAGGACCCGTGG
ACGCCGTGACACAGAGAGCGGTGAGAGTGAACAGTGTGTGCAGTCCCTGG
GTACAGACATGCGGGAGGAGATACTGGACTTAGTGGACTCCATCACAGAC
CTGGGGCAGATGGGGATGGAGGAAGATTTCTGCAGTATGTATTCCAACAT
GGAGACTGATGTGGCTAACATCACAGCATCGAATCCCAACTGTGGACCCG
AGGATATTCCTGTTATCCTGGAGTACATAGCAGACAGCAAGTACGACATC
GTGATGGCCTGGGCGGAGGACAAGTGCCCCGTGAGCGCCAGTGATGGCGG
CTCCACTCTCCCTTCGGCAACCATGGTCATCGCGCTGCAGCTCATAGCGG
CTGTCGCTGTGGGGTGCTGGCGTATGGAACTCCCGTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00317.0-exon-Sc0000086-1570713199:692739..693005Blg00317.0-exon-Sc0000086-1570713199:692739..693005Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:693220..693324Blg00317.0-exon-Sc0000086-1570713199:693220..693324Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:693541..693676Blg00317.0-exon-Sc0000086-1570713199:693541..693676Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:694177..694353Blg00317.0-exon-Sc0000086-1570713199:694177..694353Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:694872..695025Blg00317.0-exon-Sc0000086-1570713199:694872..695025Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:695234..695334Blg00317.0-exon-Sc0000086-1570713199:695234..695334Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:695995..696139Blg00317.0-exon-Sc0000086-1570713199:695995..696139Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:696524..696621Blg00317.0-exon-Sc0000086-1570713199:696524..696621Branchiostoma lanceolatumexon
Blg00317.0-exon-Sc0000086-1570713199:696918..697072Blg00317.0-exon-Sc0000086-1570713199:696918..697072Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00317.0Blg00317.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:692739..697072 +
Properties
Property NameValue
GeneIDBlg00317