Blg00315.0 (mRNA) - B. lanceolatum

Overview
NameBlg00315.0
Unique NameBlg00315.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:1188968..1192777+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00315.0 ID=Blg00315.0|Name=Blg00315.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3810bp|location=Sequence derived from alignment at Sc0000086:1188968..1192777+ (Branchiostoma lanceolatum)
ATGATGCTAGCTTTAGTCAGGAGCGTGCTTGGCTCCAAGTCTGCCCTTAT GGTCAATTCAGTTGATTTGAATATTTTAAGTAGATTAGTTCTCCAAGGTT TTCTCAGGTCCATACCTGACACAACTGTGGGGATGTTAAGTCTAACTGAC ATTGAGTATGTATGTGTTGAGGGATGCCCCATTAATGATTCACGTCTGGT GGATGGGGTTTTGTTTGAGACCCCCAAAATCACAAAACAATACTTAGCTA AGGTTATACCTAGAAAGGTACATCTCCAAGGTGGCGCAGAAACCATAAAA GTTGCCCTGTTCAACACATCTCTGTCGGGGGATAGCGAGGAGTTCGTGGA CACAGCGTACGAGGCAGATGTCGGCGTGTCTGGGGATGACTCGGTGTTCC GACACCTGATGCAGGTGGCAGCACACCTGGTGCAGCTGCAGGTGGGAGTG TTGGCATGTCAGAGGGTGGTCCATCCAGGTGTGCAGAAGTACCTGGCTGA GAATGGAGTCCTGACTGTGGACAGACTGGGAAGTCTGCATGTTGTAGCAG TACAGAGGCTCACAGGTAAGTGTAGGAGTACATAGTTTTATCCCATGCTG TGTAGTCTTTTGTAGATTAGTTTCCAAGAAATGTTGCATAGTATGAGTTG CCATACGTGTATGTTGGATCTTATAAAGTTGTTGAGCAATGAATCAATAT GTATCACACAAGGTGTAGATTTTGTTGTGCTATAAGCTGTGATGCTTGAA AAAAAAACGTGGGAAATGGTGAAAGAACAATTGTTGATTTGTTGATCACC ACAAGGTCACAGAGTTCCAAAATCACCAGAAAATGAAGAAAATTTTTTAC CTGAAAGTTCACCCTGTGACATTTGTTTTGGTTCAGTGACCTGTGAACAT CAGCCGATCCCTAAAAATTGTGCAGGGATTGAGAGGACACTGTCCATATT CCAGCCAAAAATGTCCTATAGTATAGAGCTCGCAGACTCTGCTGGTGAGC TATTTTCTACTGTGTGACTGGTTTTAATCCCTATGCTCACCTTGTAATGA TAACGCTTGTAAACTGAAGCTGAAGTTAAGGATATCTTGACTTTCGTCAG TAAAGTGTTCTTGACTGTTCCCTTAGATGCAACAGCCATTGGCACATTAC ATGCCACCATCAAAGAAGACTATATTGGCCACCTGCAAAGTGTGAGCACA GTCCAGATACAACATAAGAACTACCTACACCTCCAGTCTTCCACCAGTCC TGTGACCACCCTGGTGCTGTGTAACAGGAATGAAGCAGCCCTACTAGAAA TGAAAGTGAGCACTGGAAATCTTGAAATGATCTCAGTGGTATTATGTTTG CAGTTGTTGCAGTGATCCCACCACTGTGAAATCATGATAGTGTGAAAGAT TTTTCTTCAACAATGCAGTCCACTACTAATTTAGATAATTCAAATTTCCC CCCCTTCTGCAAAATTTAGTCCCCTCAAACTTTTGGATGATTTAATGTAC TGAATCCATATGTTTGAAAAAATGCATGACAGCAAAGGAGAATTGTCCAT CTGAAAAATACTTTAAAAGGAAATGTTCACCATGGTAATTATATATATAC AAATGTATGTGTGTGTATATGTGCTTGCATGTGTGTGTGTATGTGTGTAT GTGTATAGAAATACCAAAGTATCTAAATTTTGATTGAATTCAGTTCCAAC TAGCGCAAATCTAAGCAAAGATTCCTGTCATCAATCTAGACACACTCCTG CTACCCCATTCCATGACACATGCTGATACCTTTTTCTCTGTTGTACCAGG ATGTTTGTCGTACAGCCCACCATGTCCTGTGCCAGGCCTTGAGAACTCCA CATGTCCTGTGTGGAGGGGGCTGTACAGAAACACACCTGGCAGCACACCT CACAGCACAGGTCAGCTACTTTTACACCTGTAATCATTGTCAGGAAGGTT TTCATTGTTGTTCTGCTATCCCTTTTGGATTGGTAAAGGAATTAATTGAT GATGTTTGGACTCTTAAACCCTAACTCCTCTTAGTAATTTTACTTAAGGT AATTAATCCCTTCCTGGTAGGTCTGGTACATGTCAGCAAGACGGAATCTG AAAACACAATTTAATCCTCCAGCCTAATGGTGTGCTTTCATCGTGTACAT GCATGTCTGCAATCAGCCACCTGTGCTTGTGGAATGCAATTGGGAACCAT AATAGACTGCATAGTCTGTGCATGCCTTTTTCCGTGAGGCGTAGCAAACT ATGATTCAACATGGCTGGCCCACTCTAGTTCAACGTGAAGTTAGTTCATG CAAGAAGGTCTAAACCTTCTTGGTTTATGTATGGAATTTCTCATGCAGGT TTAGAACGCAGACTAATTTGAGACTACATGTGACGTGTACATAGATTGTT ACATGACTGTGATTGTTGTGGTTCATTGGCAAGGGGCCAATACTCAGGGG GTTTGCCAATACTGAGTGACTGGAAAGAAGGCATACCTAAGCCTGTTATA TGTCCCAAAGAATTCGGCCAGAGCAAACCTAGGCAGAGCCCTGAGTGTGA AATGCTCAAAGAATATTTTCTCTAACATGGGACAATCTGATCCCTAAACT GTAGTCCCTGCCAGCAGTGTGTAAGATGGAATCCCCCTCCCCCCAGCCTT TGCGATTTTGCCAAAGAACATAGCTTATATAACACACAGCAGTGGATTGT CAATCTAGTCATTTGGATCTAAACCCCAGACTAGACATGTAGGCACTGCA CATTCAACATAGTAAGGTATATGCATATATGCAATTGGCCTTCATGATAA CTTTTTTATTGATTGTACATGTATTGACAAGCTATTCAACAGTTTATTGA ATATGTATCGCCCAATACAGAGGAGGAAATGTGGTTCAGCTAAATTCTAT ACTTAAGAATCCTATTTCAGAAAATTTGAACTTTGTCAATGGACACATTG CTGAGACTTAAGAGCATACAGTACTCCTTGTACATTACTTTCCAGCTGTT AGTGATGACTGATTCCTAGACAAGATGTCAAACACATGCATTAGGCAATG TACAATCATACACATTGTTCTCTGTGCATTCTAGGTCAGGATGCAAGAGG AGACGCTGCTTGCAAAGCTCCGCTGCTCCAAAGCCCAACTGCACACTGCT GCAAACAACTTTGCACGCTGTCTGGAACAAGTGGCCATGGCACTGGAGCA TGATGGGGGATGTCATGGGTCAGACCCTGTCAATCATCACCACTGGCTCC TCCCACCCTGGGCCTCCACCATGGACCCTGCTGAGGCAGGTGTGGAGACA TGTGCATGTGGGGTGGTAAAAACAGACAAGATTGAGTTAGCTAGCTGCTC TCCCATTGGTCACCTCAGCAACCAATCCCAGCCATCCTCCAGTTCAGAAG GTCATGGAAAACATAATGATGACAAAAGCAATTGCAGTGTGAGCTTGACA GATTACATGGACCAGGCAACACAGAAAGGTGTTGAGTCTAGTTTTTCTAA TGTTGTGTTAGACTCATTTCCTGTGAAGTTGAATGCCTTTGTGGTAGCTG TTGAGACAGCTAACATGATACTGACTGTCAACAGGACTATTTTTGACAAA AATTGAATTCTTAGAAAAAGGTAAAATCAGGAAGTGAGAACTGAAAATTG GAAGAATTAATGAGAATATTGCAGAAGCATTTAGTTTAAATTATTTCATG ATAGGTATATCTAGATATCTCTGATGAAATGCATCGTAGACTTTGCACAT TAATAAATTTTTGTGATTTAGCTTGTGGATATGTCTTGTTTTTGATAGTT AAGACTGTAG

Coding sequence (CDS) from alignment at Sc0000086:1188968..1192777+

>Blg00315.0 ID=Blg00315.0|Name=Blg00315.0|organism=Branchiostoma lanceolatum|type=CDS|length=882bp|location=Sequence derived from alignment at Sc0000086:1188968..1192777+ (Branchiostoma lanceolatum)
ATGATGCTAGCTTTAGTCAGGAGCGTGCTTGGCTCCAAGTCTGCCCTTAT
GGTACATCTCCAAGGTGGCGCAGAAACCATAAAAGTTGCCCTGTTCAACA
CATCTCTGTCGGGGGATAGCGAGGAGTTCGTGGACACAGCGTACGAGGCA
GATGTCGGCGTGTCTGGGGATGACTCGGTGTTCCGACACCTGATGCAGGT
GGCAGCACACCTGGTGCAGCTGCAGGTGGGAGTGTTGGCATGTCAGAGGG
TGGTCCATCCAGGTGTGCAGAAGTACCTGGCTGAGAATGGAGTCCTGACT
GTGGACAGACTGGGAAGTCTGCATGTTGTAGCAGTACAGAGGCTCACAGA
TGCAACAGCCATTGGCACATTACATGCCACCATCAAAGAAGACTATATTG
GCCACCTGCAAAGTGTGAGCACAGTCCAGATACAACATAAGAACTACCTA
CACCTCCAGTCTTCCACCAGTCCTGTGACCACCCTGGTGCTGTGTAACAG
GAATGAAGCAGCCCTACTAGAAATGAAAGATGTTTGTCGTACAGCCCACC
ATGTCCTGTGCCAGGCCTTGAGAACTCCACATGTCCTGTGTGGAGGGGGC
TGTACAGAAACACACCTGGCAGCACACCTCACAGCACAGGTCAGGATGCA
AGAGGAGACGCTGCTTGCAAAGCTCCGCTGCTCCAAAGCCCAACTGCACA
CTGCTGCAAACAACTTTGCACGCTGTCTGGAACAAGTGGCCATGGCACTG
GAGCATGATGGGGGATGTCATGGGTCAGACCCTGTCAATCATCACCACTG
GCTCCTCCCACCCTGGGCCTCCACCATGGACCCTGCTGAGGCAGGTGTGG
AGACATGTGCATGTGGGGTGTTAAGACTGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00315.0Blg00315.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00315.0-exon-Sc0000086-1570713199:1188968..1189018Blg00315.0-exon-Sc0000086-1570713199:1188968..1189018Branchiostoma lanceolatumexon
Blg00315.0-exon-Sc0000086-1570713199:1189235..1189532Blg00315.0-exon-Sc0000086-1570713199:1189235..1189532Branchiostoma lanceolatumexon
Blg00315.0-exon-Sc0000086-1570713199:1190094..1190272Blg00315.0-exon-Sc0000086-1570713199:1190094..1190272Branchiostoma lanceolatumexon
Blg00315.0-exon-Sc0000086-1570713199:1190767..1190877Blg00315.0-exon-Sc0000086-1570713199:1190767..1190877Branchiostoma lanceolatumexon
Blg00315.0-exon-Sc0000086-1570713199:1192052..1192282Blg00315.0-exon-Sc0000086-1570713199:1192052..1192282Branchiostoma lanceolatumexon
Blg00315.0-exon-Sc0000086-1570713199:1192766..1192777Blg00315.0-exon-Sc0000086-1570713199:1192766..1192777Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:1188968..1192777 +
Properties
Property NameValue
GeneIDBlg00315