Blg00314.2 (mRNA) - B. lanceolatum

Overview
NameBlg00314.2
Unique NameBlg00314.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:227344..231267+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00314.2 ID=Blg00314.2|Name=Blg00314.2|organism=Branchiostoma lanceolatum|type=mRNA|length=3924bp|location=Sequence derived from alignment at Sc0000086:227344..231267+ (Branchiostoma lanceolatum)
CGATTTTCCACCCCAACATCTGCTTGGAGACAAGTCATGTAGTATTAGCA TGCAGTACGACTGCCCGTGCGCATCACGTGACTGCTGGTCTAGACTGAAT AGGGAAGTGAAATATGAGACACCCCCATAAGTACTATTTATAAACTTCAC AGTTCCAGTTCCCTTTCCTGGTCGCCAACACAACAGGTTGTCGCCCTGCT CACAGGAGTCTTCAATACGACGTTCCTTTTACAGACAGGTGAGTCATATG CTCTTATACTTTCGATCTTTTAGGACACACACCATGACAAATCATGGCGT GATACCTCAGATATCACAGAAGCAGAAACATACCAAGGCTGCTACCGCCA AGTTTAGGTGTACGGGCGAGTTTGAACTCATGAAAATGTCCTGCCAAAAC GTACATGTTGCGATAGGTGACGCCATTTGAAATCACAGCTATAGGCATGT TACAACTTACAAGGATCTACCATATACCGGCATGTTCATATCATGTAACG AAGGGAGAGGAGGTGATCGAATATCCGTGCATGTTTGTATGTCGTTAATT CGTGCATAGTCTTCCTTTGCGAGAGGTAAAAAGGTGGAGAACCCCCGATA TAAGACACCTGTAGCATCTATCATCATGTTTATATTGTAGTGTATGCAAG TAGGCATAGATCCTAAAACATTGCTTATATGACTGGGTTGAACTTATGAT GTATTGAAGTTTGACTTCCCTTCTTCGAGTTTCGCAGATGGCACTTGTAC AAAAAAACTTAGTACCACGAAACGTCAATGTACATCAATGACTATCCCTC TTTCTCTGCGTTGCTGTGTAGATTTTCAAATCCTGAAGGGTGTTATAGCA ATAGTGCTTGAAACCCTTCAAGTTCCAGGCGGTATTTTACCAAAAGCGGA ACTTCCGCGTTCTGCTCCAAACAATGGCAGGCTGCAGTACTGTTTACCTC CGCCAGGCTTCTCTTCATGCGTGCTGGGCTTTATACCTTACACTTTTTGT CATATTGCAGTCTGTGTCCGTTAAATTCTGCACATATAGTTCACGAAAAT AAGATTTTTACATAGCTGACACGCTGCATACAATACACACATCATGCCTG ACGAACTTTTCACACTGTTCCCGTTTTGCAATCCAAACCGTGAATGTGTG AAAGAAAACAAGGGACGACGGTATTTGCCCACACAGACATTCACATAGAC GTTGATGACATTGTATCAAAATGAAGAGCAATATTAATGAGTAAATGATT GGAATAGACCTTCTTTTTTAATCTGTTTGACTTGCATAATTTGGTTAATA ATATTTCCCACTCATACTGTACCCACGTGTTTGCTTTTTGGCCAGCAGAC TATCGATAGCCTTGAAACAGCCATGGCAGCAGCACATCTCCTGGCCGTAA TCCTCCTGATCGCCACCGCCGCACAAGCCGTCCTGGTGCCTGAAGCGTGG CTAGATGCTGATTCCTTCCTCTCAATCTTCGCCTTCAAAGGACCTGTGCG CTGGTCTAACTGTGGTAAGTTTCAGGTGTTTTATCAACCGAATGTGGCAT CAATTTTTCCTTTGAACCTTCTACCACCCTGTCTTGTCACTTCGTTGGAT TTATCTATCTATCTATTTAGTTAGTTAGTTAGTTAGATGTGTTGCTGTTT TGTTATTGCTTTAGTGGAAGACATAACCTGTTGTGCACCCCCACCTCCCC ACTTACAGGTGATCCCGTCACACAGAGTTTTAACGGGACGATCACCCCAA ACCCACCAATGAGAGGACAGAAAGTCGCAGGCTCTTTCACCTTTGTACCA GGTATGTGCTGACGGGTCGATAAGAATAGATGTGAATCAATCAATCAATC AATCAATCAATCAATCAATCAATTTCTTATATATATATATATATATATAT ATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATAGATAT ATATATATATGTATATATATATATATATATATATAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGATATTGATATGTATAATTATGTATATATATAT ATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTATAG ATAGATATACCGCATTATTGGTGATCCTCTTACAAGTGTTAAGTATGAGT GTATGTAACTCTACAATTGTTGTTTCGGTACTTATAACTACAGACGCAGA TCTAACCGCTGGAAAGATCAGCCTGGATCTGTGGTATAACGGATCCCCTG CGCTAAAGGTACCTCTCCCGATCTGCAAAGGCGGCAAGGGATCGGAATAC TGCCCGATGAAAAAGGGAGGTGAGTAACGGTCACAGGGAATATGCTTGGT CTGGGGTGGGATACAATGGACGTTGTATATATACTGCTTTATACTTAGCA TAAGTTGTCTTTTTGTTATAATTTGGCCTATGTTATGTTACATGGGGGGA AGCACAATTATGTTTCCTTGCCACTCTAGCCCCCTTTTTGTCCTCAGTTT GCGTCACGTTGCCTAAATGCATGCTTTACTGCTTGATTATAGAAAAATTT AACAAACTTTGATACACTTTGAAGTTGACTACTCCCTTCTACTATTTAGT AACGTGTGATTGATTCATCTTAGCATATATTGTACGTCTGTTTGCCCTAC AGTGAAGGTGACCGCTGCCAGTTCTACCGCAGTGCCCAAATACTTGCAGC CGGTAAGATGAAATTCTCCAGTGTGGTACAGACTTATAAATGAAAGGTTT CTGTATTGTAATTATTTATTCTTTATTTATTGAAACGCCCACTCCACTTT ATAAGATTAAAACACCTATAACGGCAGTATGATAAAGATCTAGTTCCCGG TTTCTACGGTAAAACACTTTCAGAAATTCCTCAAAATCGAAGTACTAGTA CCACAATGATGCTCATGTTGGAACACATTAAAATTTGGTTCCCAAAAACA GTTCCTAAAACTGCAGTGTGACAGACACTGAAATGACTATGTACATTAAT GTCCGTTACCGACAGATACCCTCTTCCCCTTTTTCGTTACTAAAAAGGAA GGAAATCCTTTCTGTTCCGTAAAGTCTTGCTGACTTTTGTTCTTTTTAGT GTTGTTCAATCTTTACTTTCAATTCTCTATACTTTTTAATCTCGTCATCA TCATATACATTGCTACGATGACAATTTAGTCCATCACACATATCTAATGC GCATATTTTGTAATGCTGTAACTGACTATGAAGTGCGCATATAGATTGGT ACGATGACTATTTAGTCCACCACACATATAGATAATGCGTGTGTGCTGTT ATGAAGTGTGCATATAGATTGCTATGATGACAATCTAGTCTACCGCACGT ACTACTGGCAATGAAGCTACGCTGTTAACTTTTGATGAGGTGTGATTTCT TGTTTTATTAGCCATAAAATTGTGCGCTATTTGGAAACCTGGCGTCTGAT ACGACTTTTTGTTTCTTCATTTTGGCGCATGCGCCCTTGCAGGGACACTA CAACGGCACCGCCATCTTGCTGAATCAGGACAACCATCAGATGCTGTGCA TTCAGGCGGAGGGGGACCTGGCCTAGATCTGAGGAGCGAAACCAAATGTT TCAGAAACATTGCCTATTCAAGAGCGCTAGAATCAACAATCCCCATTATC ATCACATTCTTGACTTGAATTAAAAGTGTTCGAATAAAGATTTGACCAAA GATCAACAGGATTTGTGTTTTATACGATCTGCTCACATGCACAATATCGA CAACGTATGTTGTATTTTGGAAAACTATGCCATTTACAGCAAAGGATATC ATGAATATCATGAAACACGTGTTATTTCTGTTGGATATGGTTTGTTAAAA TTGAGTAGATATTCAAGCTTTCATATAGGATTACTCTGAAAGAGTAGACG CTAAAAATAAAATGTCGCATGAAA

Coding sequence (CDS) from alignment at Sc0000086:227344..231267+

>Blg00314.2 ID=Blg00314.2|Name=Blg00314.2|organism=Branchiostoma lanceolatum|type=CDS|length=420bp|location=Sequence derived from alignment at Sc0000086:227344..231267+ (Branchiostoma lanceolatum)
ATGGCAGCAGCACATCTCCTGGCCGTAATCCTCCTGATCGCCACCGCCGC
ACAAGCCGTCCTGGTGCCTGAAGCGTGGCTAGATGCTGATTCCTTCCTCT
CAATCTTCGCCTTCAAAGGACCTGTGCGCTGGTCTAACTGTGGTGATCCC
GTCACACAGAGTTTTAACGGGACGATCACCCCAAACCCACCAATGAGAGG
ACAGAAAGTCGCAGGCTCTTTCACCTTTGTACCAGACGCAGATCTAACCG
CTGGAAAGATCAGCCTGGATCTGTGGTATAACGGATCCCCTGCGCTAAAG
GTACCTCTCCCGATCTGCAAAGGCGGCAAGGGATCGGAATACTGCCCGAT
GAAAAAGGGAGTGAAGGTGACCGCTGCCAGTTCTACCGCAGTGCCCAAAT
ACTTGCAGCCGGTAAGATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00314.2Blg00314.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00314.2-exon-Sc0000086-1570713199:227344..227581Blg00314.2-exon-Sc0000086-1570713199:227344..227581Branchiostoma lanceolatumexon
Blg00314.2-exon-Sc0000086-1570713199:228692..228857Blg00314.2-exon-Sc0000086-1570713199:228692..228857Branchiostoma lanceolatumexon
Blg00314.2-exon-Sc0000086-1570713199:229052..229144Blg00314.2-exon-Sc0000086-1570713199:229052..229144Branchiostoma lanceolatumexon
Blg00314.2-exon-Sc0000086-1570713199:229537..229662Blg00314.2-exon-Sc0000086-1570713199:229537..229662Branchiostoma lanceolatumexon
Blg00314.2-exon-Sc0000086-1570713199:229996..231267Blg00314.2-exon-Sc0000086-1570713199:229996..231267Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:227344..231267 +
Properties
Property NameValue
GeneIDBlg00314