Blg00310.0 (mRNA) - B. lanceolatum

Overview
NameBlg00310.0
Unique NameBlg00310.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:281494..287417+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00310.0 ID=Blg00310.0|Name=Blg00310.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5924bp|location=Sequence derived from alignment at Sc0000086:281494..287417+ (Branchiostoma lanceolatum)
ATGTCGTCCGAGCATTCCGTCCTGAAGCAGCTCCACCCCCAGATCAGACC GTACGTCGAGATGGTCCTGAGGAAGGGGAATGTGGGGGTCTGTATGGGGA ATCTGCGAATCAGCGATGTCAAGTCAGGGTGAGCTCTGCTTTTATGATTT TTCACTTCCTTCCAGTTTTGAAATTTATATCGTTAAACTTTGTTGTTGGT TTGAGACATATTGCAAACTGCTAAGATAAGCTAATTGACAGTAGGCTTTG CCATTTCAGAAAAAAGTCAGGTCCAAAGTATAAACTTTCAATTTTGTATA GTTAAAAGTGTCAAAAAATGAAAGTAACTAAAAGTCACACTGAAATAATT TTGATTTGATATTTCTTATTTTCAGAAGACCAACCCTGACTCAGACTAAG GAGCCATGTGGAGACAGGTTCAAGATCTACATCCCGTTTGCTGGGGACTC GCTGAAGTGTAAGGATGTTTTTGTAGCACACACTAGCAGTGTTGTTTGTT TCGTCTGAAACTAGGGATAATAACTTTTTCACCTTTATTAAACAAAATTG TTGTACTACTGTTTTCTTTATCTGACACAGTTTGGACTACTAGTACTACA CCAATATCACTTTTGGTCAGCTACTTCCAAAAACTGTGTTTTACACTATT ATGATTCCCTTTGAATTGTCATGTGTTTCTTTTTCTCCAGGGGAGATTAT ATTTGACAGCTGCCAGCCGTCCAACCCTCCAGACTTCATCTTCTTGGGTG AAAATGGCAACTTCGATCCCGACATAGAAAAACTGGAGGTCAGAACTTCA GCATTCATTGAAACACTTTAAAATGCATTTAATTTCACAGTTTTATTTTG CAATAGGATGTAAAAGAAGCTTTTTGTGGTGTTAAAAGTTCATGCACCTT ACAGAGAAGATGTTTACTTGATTTCCTTGCAGAACTTGACCGATTGGGAC CCTAAGAATCCAGAGTCCCTGGTGTTGGTTATAGAAGACCTGATGAGGGA GTACCGGTGCTACCAGAAACAGCTGATAGAAGGTTTGTGTTTGGCATAAT CAGCTGGAGTAGACTGCCGTTAGACATGACACACCAGTTTTGTACAGTAA GTATAAGCCATGACTGTAGGGTTCGATCCACTCACACCGGGAAGTACCCC TACTCTTGTAGTTGATAAGTATGGTGGGATCTTAAACGTGGTCGAGATGT AACTCTCCTCAAACAAAGGGACCTCTGGCTTCCATGCCAGCTAAGGGACA TTCCTAGCCGAAGCTATGTACTCATTTACACGTGAGTAAGGAAATAGGTG TAAAGTGCCTTTCCCAAGGGCACAACACTGGTGCCTACTAGTGACTCAAA CCCAGAACTTTTAGATTCTATGTCAACCACTCTAACCACAAGACCACCTT GCAGGTTACAGCAGACTGCAGTTTGAGTACTCCAGTCTACAGGGGCTGGA GGCTTGTGATGATGTAGAGGTGCACATGGGGAACAGACTACCTGGGGTGA GGCATCTGCCTTTAAAAAAACTCCTACAGTTACTTAAACTGATTTGAGCA ACTTGAATTGCATTGATCTTGTCAACAGTGGGAAGAAGTACAGTTGCATT CTTTCAATAATTGCAATTGTTAAAATATGTTATTTTTCCAGACTCTTGAC TCTCCAGTCAACTTCCTCATCAGACTACCGATTGACCTCTCACCTATTCC ACAGTATTTGGTCAAGGTAAGTCGTCGAGACATGTACTGTTTTTGTAGTA TCAAATGTTGTACATGTAATAACAGATATTGNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAAAAAACTCCTACAG TTACTTAAACTGATTTGAGCAACTTGAATTGCATTGATCTTGTCAACAGT GGGAAGAAGTACAGTTGCATTCTTTCAATAATTGCAATTGTTAAAATATG TTATTTTTCCAGACTCTTGACTCTCCAGTCAACTTCCTCATCAGACTACC GATTGACCTCTCACCTATTCCACAGTATTTGGTCAAGGTAAGTCGTCGAG ACATGTACTGTTTTTGTAGTATCAAATGTTGTACATGTAATAACAGATAT TGCACACTCTTTAGCATAGAATAGGTATCTTGGTCCTATTGTGATCAGAT ACATTTAAGGCCCTGTTCTTACCAAGATTTACAAATCGAGATTCACCCAG GCATGGGATCAATCCTCATTTGTGACTCCTGGTATGAACAGTTCTAATCT GGCGCAGAGGGGGGTTGATATCGATTTCCTAAAGCCACCTTAGTAAGATC AATCCTGTGCCTATGCCAATTTGCAAATCCTTGTATGACTGAGGTCTAAG TCTGTTGTAGCATACAATGTACATGTATTAAGCAAATGGTAATGTTAACT CCAGTGTTGTTTTTGTTTCCTGTTTGACCCAGGATGACCCTGGAGAAGAC CTTGCGGTGTTACTCGCCAAGTTTCACAACACGGAAGGTCTCAGAGTCAC ACCTCAGCTCTTTCTATCACCAAAAGTCGAACAGTAAGATTTTATTCTAT AAAGTCTGTGTTTCCAGGTATTCCTGTTGTTGATACCTTTTTCTTGAGCT GGGAGTTGTGCTCAATACACAAGAGTCATCTTTACAAGTTCATTGTTTGC TTTTACCTCTAGGAAACAGAAATATTGTTTTCGGTATGTGTGTTTGGTTG TTTGTTTGTTTGCTTGTGTTGGTGTGTGTCTGTGGTTATTTGAATATTGT AGAGTGACAGGATGTAAGGCAGAAGATGGTGTAACCGGAGACTGGCAGGA TGGGAAGGTTGGCTTGGCCCAGGTCCAAAGTTGGTCCCACAGTCTGACAA GGTTGGCTTGGACTGGGTTTAAAGTTGGTCCCGCAGACTGGCTGGAAACT ACTTTACTTTGATAGAAAAAGTGAGACATTTACAATGAAAAGATGTAACT ATTTCACGGAATTGTATGATCTGATTTCATGTTTTGTTTTACCAGTGCAC TGGGAGACAACACAGCCTTGAGAATTCCCAGGTTTCCTACAGGAGGTTGT CTGATGGACTATGTTCCACAGGTTCAGGATTTTCTACAGAAACAGGTACA GTACTATCTTTGGACCTTTTTTAAAAATCTCATTGCAGTGCTGTTTCTTT GTTAGAATGAAGTGTTGTAAATCTGTGATGAATTACAATTTCCAAAAGGA TTTATTCATTGCTGTTTCAGATTGACTACATTGTTGAGGGATACCAGAGA AGGAGAGAGTATGTTGCAGCATTCATCAGCAGATTTGGAGGGTAAAATGA TACAGTCTTATGATACAGTATCACTTTTCTATTAGCTTGACTTTTTATTA GCTTGAGCTTTCTTATGATTTCTCTTAAACAGTATATAGAAAATTTTATA GAAGTACAAAAAAATCTTTCAGTGGCCTACTGATATACAGATTAAGGAAA TGTAGTTTACCAATCAGTATTATTTGTCAAGAATAGAAAGTATGTTTGTT GTCAAACTGACAAGTTGATGTCCTTACAGGTCAGTACTGGAGTATGATGC CGAGTCCTTCACCAAGCTGTCCCTGGTGCTTGAATGGAACGAATTCTTCT TTGTACTTCACAGTATGTACTTTCCTCATTGTGTACTGTTAGTAAATTGT GAATGGTCAACACATTAAAAAAAGTTTGAATACTGTTCTCACATTATGTA TTATGTATATCAAGCTGCTACATTGTATTGTAGTTCTTTGACTCCATACA TTTTTTTGTCGCTGAAAAATGTACCATTTTGTCCTTCCAGTTGAGCTTCC CTCCAGGTTTCCCCAGGATATGCCAGTCTTCACCTTCCAGTCCTGCTACC ACCTGTCCAAGACTAACGGAGAACCCTTCGTCTCAGTCCAGAAGAGCTAC CCCTACAGTCCACGCTGGACTGGCGAGGAGATGGCACACAGGGCGAGGTA GGGTTACTGGTCTTGTCTTACTGCATGAAATATGAAATGTATTGCTGGGA TGATTTTATATCTTTGCGTTTGCTACTGTGGTGGCATTGTAGTCACGGTG GCAGCCCCGACATCCCTGTGTCAAAGATTAAAAGTTATAACGTGTTTGGT TGTTTTCCAGACTGTTTATCCTGGACACCATACCGCAGTTCCAGAAGGTG TCTGTGTCATCCACCAAACTGTAG

Coding sequence (CDS) from alignment at Sc0000086:281494..287417+

>Blg00310.0 ID=Blg00310.0|Name=Blg00310.0|organism=Branchiostoma lanceolatum|type=CDS|length=1152bp|location=Sequence derived from alignment at Sc0000086:281494..287417+ (Branchiostoma lanceolatum)
ATGTCGTCCGAGCATTCCGTCCTGAAGCAGCTCCACCCCCAGATCAGACC
GTACGTCGAGATGGTCCTGAGGAAGGGGAATGTGGGGGTCTGTATGGGGA
ATCTGCGAATCAGCGATGTCAAGTCAGGAAGACCAACCCTGACTCAGACT
AAGGAGCCATGTGGAGACAGGTTCAAGATCTACATCCCGTTTGCTGGGGA
CTCGCTGAAGTGGGAGATTATATTTGACAGCTGCCAGCCGTCCAACCCTC
CAGACTTCATCTTCTTGGGTGAAAATGGCAACTTCGATCCCGACATAGAA
AAACTGGAGAACTTGACCGATTGGGACCCTAAGAATCCAGAGTCCCTGGT
GTTGGTTATAGAAGACCTGATGAGGGAGTACCGGTGCTACCAGAAACAGC
TGATAGAAGGTTACAGCAGACTGCAGTTTGAGTACTCCAGTCTACAGGGG
CTGGAGGCTTGTGATGATGTAGAGGTGCACATGGGGAACAGACTACCTGG
GACTCTTGACTCTCCAGTCAACTTCCTCATCAGACTACCGATTGACCTCT
CACCTATTCCACAGTATTTGGTCAAGGATGACCCTGGAGAAGACCTTGCG
GTGTTACTCGCCAAGTTTCACAACACGGAAGGTCTCAGAGTCACACCTCA
GCTCTTTCTATCACCAAAAGTCGAACATGCACTGGGAGACAACACAGCCT
TGAGAATTCCCAGGTTTCCTACAGGAGGTTGTCTGATGGACTATGTTCCA
CAGGTTCAGGATTTTCTACAGAAACAGATTGACTACATTGTTGAGGGATA
CCAGAGAAGGAGAGAGTATGTTGCAGCATTCATCAGCAGATTTGGAGGGT
CAGTACTGGAGTATGATGCCGAGTCCTTCACCAAGCTGTCCCTGGTGCTT
GAATGGAACGAATTCTTCTTTGTACTTCACATTGAGCTTCCCTCCAGGTT
TCCCCAGGATATGCCAGTCTTCACCTTCCAGTCCTGCTACCACCTGTCCA
AGACTAACGGAGAACCCTTCGTCTCAGTCCAGAAGAGCTACCCCTACAGT
CCACGCTGGACTGGCGAGGAGATGGCACACAGGGCGAGACTGTTTATCCT
GGACACCATACCGCAGTTCCAGAAGGTGTCTGTGTCATCCACCAAACTGT
AG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00310.0Blg00310.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00310.0-exon-Sc0000086-1570713199:281494..281621Blg00310.0-exon-Sc0000086-1570713199:281494..281621Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:281869..281951Blg00310.0-exon-Sc0000086-1570713199:281869..281951Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:282184..282281Blg00310.0-exon-Sc0000086-1570713199:282184..282281Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:282426..282525Blg00310.0-exon-Sc0000086-1570713199:282426..282525Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:282898..282989Blg00310.0-exon-Sc0000086-1570713199:282898..282989Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:283135..283209Blg00310.0-exon-Sc0000086-1570713199:283135..283209Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:285676..285776Blg00310.0-exon-Sc0000086-1570713199:285676..285776Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:286239..286338Blg00310.0-exon-Sc0000086-1570713199:286239..286338Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:286464..286534Blg00310.0-exon-Sc0000086-1570713199:286464..286534Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:286773..286855Blg00310.0-exon-Sc0000086-1570713199:286773..286855Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:287034..287190Blg00310.0-exon-Sc0000086-1570713199:287034..287190Branchiostoma lanceolatumexon
Blg00310.0-exon-Sc0000086-1570713199:287354..287417Blg00310.0-exon-Sc0000086-1570713199:287354..287417Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:281494..287417 +
Properties
Property NameValue
GeneIDBlg00310