Blg00309.6 (mRNA) - B. lanceolatum

Overview
NameBlg00309.6
Unique NameBlg00309.6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:548813..555706-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00309.6 ID=Blg00309.6|Name=Blg00309.6|organism=Branchiostoma lanceolatum|type=mRNA|length=6894bp|location=Sequence derived from alignment at Sc0000086:548813..555706- (Branchiostoma lanceolatum)
AGAACTTTAAGCTATATTTTCATATACAAATATACCACCGATAAGCTTCC CCTTTCGCATTTTTAACCTCTCCATATCGACCTGTGTCTATATATACTAA TCTCATTTCATGGACAACCGAGACGACAACATGGGGCAGTACGAAGTGTT GACGTTTGTTCCCAATGTAATAGGTAAGTCTGAGGACTGGCATTTAAGAT AACTCTCCAAGCAGAGGAGTGGGTCCGGCAGGTTTTTGACGTGTTTTTAG GCGTTTTTGTCGAGCTTTCTACTTTGTCATGTTTTTTTTTTGTCTAGCCA AGGACATTATATAATGTCCTTGGTCTAGCCAACCCACAAAAAAAACATGA CAAAGAAGAAAGCCCGACATTAACCCCGAATTAAGGTGTATGTACCCCGA CTTGTAGCATATGTACCCCGACTTGTAGCGTATGTACCCCGACTTGTAGC GTATGTACCCCTACTTGTAGGGTATGTACCCCTACTTGTAGCGTATGTAC CCCGACCTGTAGCGTATGTACCCCGACCTGTAGCATATGTACCCCGACCT GTAGCGTATGTACCCCGACTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNAGCGTATGTACCCCGACTTGTTGCGTATGTAT CCCGACCTTAAGGTCTCATTCTTGTATTACTCCGAGTGGGTACCCTAGAA GAGTCCGTTGCCCAAAATAAGAACGGCTGCATATACGTGTGTCTATATCG GTTTAAATCCCTTTTAGCTGGCCCAGCTGATATCAAGCGTCAAACTGATG AAAGCTTGTTTGTAACGAAAGAAACTAACAGGTAAAGTTCGGCAGCCGCG CGCGAGGTCGGACGTCCACAGCCGGACATTGGCGGTAATTCGGTCGATCA CTTTCAGCTGCAAAGTACCTATTTAGGGGGTCTAGCAAAGTGCCGTTTGT AATTGCCATAAAAAGGTATTGTATGCCAACTGGTAGTTGGCAATTTTTTA AAATGATCTAGGGTAGATGAGCTCAACAGAGAATGAATGACATTGGTGCA TTTCTTATAGCTTCATTGCGAACGCGCTCATGTAAAACACGTTTTANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCGTATGTACCCCGA CTTGTAGCGTATGTACCCCGACTTGTAGCGTATGTACCCCGACCTGAAGC GTATGTGACCCAACTTGTAGCGTATGTACCCCGACTTGTAGCGTTTAAAT GGTCCTTTCCAAAGATACTCTCCAAGCAGAGGAANGTCCGTTTTCAGATA TAAACCATCATTGCATCTTAGTGCATCATTTAACATTTAAAGATGTTTAT CAACACAGTACAGCGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGAC TATGTTCGCATCGTCTTGCTCCTCGTTGCCTACTACCACATGCTTGATGA CCCTGTTATCGGCTCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAAG TAAACNTGAATTATATCAGTTGATCATCTTCTCTATCCAAATAACAAGTT CAAAGTATGAAAGTCTTATCTTAGAAAAGAAGGCTATTGTAGCATTTCCT CATAAACTATGTGAATGAGGCTCTCAATTATGCAAAATATGTATTCATTT GCATATTGCTTTCTATCGATATTCCTCTCTTTCTCAGTTACCTATGTTAC GTGTTTGAGAGTCCTATAATGGAGTGCAACAGATTTATAAACTTTCCTTA TTAATTATGCAAATTACCTACTTATTTGTATAATTAGCATGCGATTTTGT CAATCATCACTACCAACGATCTACCTACCAAATATTATGACGATCCGTCA ACGCTTTCTTGAGATATTCACTTTCCAAATCGGCTCCTGCAGTTCCAACT GCTATGGGGCCCAAACCTTCACAACATACTTCTCCCAGGTCCTATCTACC ACTCAAAATCATGACCATAGCATGTCCACAACACGAGATATCAAACCCGG AAGTTCCGCTGCAGTACCATAGTAAGCCATTAGGGGCCCAAAATCGAATC TACTCATTTTGAGGTCTCAAAAAGACCTACCCACATACCAAGTATCAAGA CAATCCATCCAGGTACTCTCGAGTTATACTGTCTACACACACACGCACAC ACACGCACGCACACACACACACACACACACACACACACACACACACACGA ACACTGTACAAAACATACCCTTCTCGGCAAAGGTAATAATAAAACAGTGT TACTCACATGTTACCATGTGATCGTCCGTTTTCAGATATAAACCATCATT GCATCTTAGTGCATCATTTAACATTTAAAGATGTTTATCAACACAGTACA GCGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGACTATGTTCGCATC GTCTTGCTCCTCGTTGCCTACTACCACATGCTTGATGACCCTGTTATCGG CTCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAAGTAAACGGCTATG CCGCCCGCTTGTTCAACCAATGTAAGACAATGAGATCAATATATGAACTA TTGCATTAGTTTACAGACTCTGAGATATTGCAGGAAAGGCTAGAAATAAC ACTTAATTCCTTCATAAACATCTTTTGTCGTACAAAGGAGCTAACAATAT TATGGTAGATCCACATATCATCATGTTGGTTCAAAGACTCTGATAATTAT CGCAAGCCATTGACAGTGTATAATGAGATCAAATCAAAAATAGTGCACGA CTTTCTTGTATAGTAGTATAGATAAACCAGGGAGTTAGACCATAGTCATA GAGCATGAGGTTTACTGTTAATGTTAGCAATAGAAGATAACAGTACGTTT GGCCGCACCGATCAATTTCCTCATTTTCGGACATTATAAAAAAATATTTA ATGTGGGCTGGGAGGAAAACTAACACATGACTATATTCAGTCCCTAGAGT TGTGTACACCAAAGGCGCAGACAGTATTATTCCATCAGACATTGTTATCG GGTTAATTTTCCCGTTCAGCAATTATCTTTTTGACTCCGAGAAGAAATTG AACTTGCATGGCCTTACCTGGCCCATCTGAATTTCTTTGTTCCTTTACCG CAACGTTTGACTTCTTTTCCTCACTCTCCTTCTTTTTTATTTGCGAGAAA TGCCTCAGACCACACTACCCTTACAATAAAATGCAATAATCATGTACATT ATCACTAATACATTGTTGTACCTGTACGTCTGTAGGCACTCGTTTCGGGA GTCAGTTGGACATACTGGTAGATCTAGTGGGTACCTGTGGGCTGCTGACG GTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTCTTCCAGGTCAGCAC AGCACTGGACATCTCAAGCCACTGGATGCACTTTTACAGGTGCTTGTTAG AGGGTTTATTAAGTCTATCTTTATTATACATGAATATATATATACATATA TATATATATATATACAGTATATATATATATGTATATAACAGAGAGAAAGA GAGATAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGATGAGGTATCATGAAGAGG GTTTTAAATTTCATTTCTTTATTGGATTGGAGAGTTTGATCCCACAACCA TTGCAAACAAATAGAGCAACATTACAGCTTAACACTCCAGCTATTTCACC GGCACCCAAAGCTACATATGAAGGATTTTGGGCGATTTAGAATTCCTTAA TATGTCACAGCTGTAACCCCGATTCACTAGAAAATACGGACCGTCCCAAT ACACGATAATGGCTGTAAAGACTATTACTTTGAAATGAAGATTCGGGGTT TACCTGTTACAACTTTTCTTTCCCCGAAGCACAATCTCACTGATGAAGTC TGCGACCCACAAGATGGCAAATTTCGCCAGCCCACTCCTGAACCTGTACT ACTCCAACTCGGTCAGTATTCAGAGTGTTAACATTTCATACTTCATGCTG AAATACATTGTGTAGATCAGAAGCTATCACTACTAGCTGTGACAACGACC TTATCTGCATGTTGACGATGACCTTTGTTGCATTTTCATTCCCAGAAGGG CTAAATGCCGTGCGTTTAATAAATAAAAGGGAAAAAGACAAGCATGTACT ATTTTACAATTTGTACCACTAAGTAACAATCAGATAATATTTTGTGGTTA ATTTGGGGGTATATAAAGGGTTTGGGGTATCATTTGAAAACTTGCACAGG CTGTAGAGACATGTCACATTTCTTCACATTCCAGCACTTTATGCGTGTCA TGTGCATTGGCAATCAGGCCTGTTACATCATGTTGTACCTGCGGTACTTC ACACCAGGACCATTTTGTGAGTCATCCGCCATTCAATGTGATTTGTATAA TATAAATGAGACAAAACTGTATGAAGTTGTGTTGACATTATTAAATGATG TGGCNTTTATTAGATGATGTGGCGGGAAGGTTATATATAGTAGTTTTAAA CTCTGAAGATAAAAGCATTCCAGAGAAGGCATATGAAACTTCACATTGAC TAAAATTACTTTTCTGGTAAAAATATTTTAACACAGGTTTGACCAATCCT CTGCTCTTCTTCCAGATAACTGAGGACCCAGTTGCTCGGCACACGTCACC TCCCGAAAGTGTAACGTAAGCATGAGGTCAAAGGTGGTTGAACGGGGGCC GGTACAGACTTTCAACCACCTTTGACCCGGTGCTGACGTCACATTTCTAG AAAGTGGTGTCTACTTAGCAACCGGGTCCTCCGTTATCCTGAGGGTTGGA GTGAAATGCTATTCCATGACGTTACGTACCAACACAATTGACCTTTTATG TTAGATCTCTTTCAAAGTTTTATTTCACTTTTGTCCATGTGAAGGGCCAT TCACGAGAGTCGGTCTGTATGCAGTACTCTTCTACCTGTGTCTCCCTGTG GCACTGCTGAAGGCCTACATCAACTGTGTGCAGCTGCAGGAAGCAGTAAG GACAATCACTGAAGTGGACATGCAAGAGAGAAAACAAGCGCTGGCATATT AAAGACAAAGACATTACCAGAACAAACCGGAAAATCCTTCCCAAATGGAT TTCACTTGGAGAGGGTTTTTTCCAGGTTATTGGTGGATTGAAGACGAAAC GTGGAAGCTCTGCATGTCATAAGACAGCGGGCCAATCGCGAGTCTCAAAA TACCAGAAAGAGTTTCTACTTTCTGCCGTATCTTTCACGTGATGACTGGT GTGCGCTTAGGTAGTGGACCGCTTCATCTGCGAGGCAAACTAGTGGGCGG ATAGCTTTGTTTTTTTTTTTACATAAAATAATGTACATCCGCGCATACAA AGGCTGCTTCAGACAGATTTGGTTGAAAGCTTATAAACAATACATCCTTT CCCAACATTCTATAATTTCATGTATAGTGTGGATATAACGGTTACGTCCT GTTTACATTTTTGTCCAGCATACTACAAGGCAAAGATGTTGCAAACATGT ATTTTCTTGACATTATCATATCTGGACTTGCAAATGTAACACTATATAGG GTCAGTATATCATAGTTTTCTTTAAATTATAAATGTACGTGCGTTATAAT GTGCAACTTGCTTTTCCGGCCTGGAACATTAATACGGAAGGAAGGGGCAA AAATATGGATAATAACCCTCTGATCCCGCGGCCTCAAAAAGGCCATGGGA CTACCTGTACGAGTGTCTTTATGACGTGGAAATAGGATATGAAGTAGATT AATCATGCTGTCGCGAAAGTAGCAACTTAACTCTTGATGCACATAGAGAC ACGCCAGTTGTGAAGTACCTGCTGTATGTAGAATATCTAGAGACGACTAC AAATGCTGCATTCACGTGGGAATAAAAAGTGAGGTCAAAATACT

Coding sequence (CDS) from alignment at Sc0000086:548813..555706-

>Blg00309.6 ID=Blg00309.6|Name=Blg00309.6|organism=Branchiostoma lanceolatum|type=CDS|length=528bp|location=Sequence derived from alignment at Sc0000086:548813..555706- (Branchiostoma lanceolatum)
ATGGACAACCGAGACGACAACATGGGGCAGTACGAAGTGTTGACGTTTGT
TCCCAATGTAATAGACTATGTTCGCATCGTCTTGCTCCTCGTTGCCTACT
ACCACATGCTTGATGACCCTGTTATCGGCTCCGTGTGCTACTTCAGTAAC
GTCATCCTAGATGAAGTAAACGGCTATGCCGCCCGCTTGTTCAACCAATG
CACTCGTTTCGGGAGTCAGTTGGACATACTGGTAGATCTAGTGGGTACCT
GTGGGCTGCTGACGGTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTC
TTCCAGGTCAGCACAGCACTGGACATCTCAAGCCACTGGATGCACTTTTA
CAGCACAATCTCACTGATGAAGTCTGCGACCCACAAGATGGCAAATTTCG
CCAGCCCACTCCTGAACCTGTACTACTCCAACTCGTTTTATTTCACTTTT
GTCCATGTGAAGGGCCATTCACGAGAGTCGGTCTGTATGCAGTACTCTTC
TACCTGTGTCTCCCTGTGGCACTGCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.6Blg00309.6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.6-exon-Sc0000086-1570713199:555534..555706Blg00309.6-exon-Sc0000086-1570713199:555534..555706Branchiostoma lanceolatumexon
Blg00309.6-exon-Sc0000086-1570713199:552186..552320Blg00309.6-exon-Sc0000086-1570713199:552186..552320Branchiostoma lanceolatumexon
Blg00309.6-exon-Sc0000086-1570713199:551318..551471Blg00309.6-exon-Sc0000086-1570713199:551318..551471Branchiostoma lanceolatumexon
Blg00309.6-exon-Sc0000086-1570713199:550746..550827Blg00309.6-exon-Sc0000086-1570713199:550746..550827Branchiostoma lanceolatumexon
Blg00309.6-exon-Sc0000086-1570713199:548813..549839Blg00309.6-exon-Sc0000086-1570713199:548813..549839Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:548813..555706 -
Properties
Property NameValue
GeneIDBlg00309