Blg00309.2 (mRNA) - B. lanceolatum

Overview
NameBlg00309.2
Unique NameBlg00309.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:548813..555855-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00309.2 ID=Blg00309.2|Name=Blg00309.2|organism=Branchiostoma lanceolatum|type=mRNA|length=7043bp|location=Sequence derived from alignment at Sc0000086:548813..555855- (Branchiostoma lanceolatum)
AAACCATTGAATAACAGGGTTGTCTGAGAATGAAAAAAATATTTACAAAA GGGAGGGGGACATTCCAAAGGGAGATTGGCTTTTAGTAAAAGGTTTCGGG GTGGGGAGATTTTTAGGGGGAGTACTAATAGCTACATTTTGACCCGAAGA GAACTTTAAGCTATATTTTCATATACAAATATACCACCGATAAGCTTCCC CTTTCGCATTTTTAACCTCTCCATATCGACCTGTGTCTATATATACTAAT CTCATTTCATGGACAACCGAGACGACAACATGGGGCAGTACGAAGTGTTG ACGTTTGTTCCCAATGTAATAGGTAAGTCTGAGGACTGGCATTTAAGATA ACTCTCCAAGCAGAGGAGTGGGTCCGGCAGGTTTTTGACGTGTTTTTAGG CGTTTTTGTCGAGCTTTCTACTTTGTCATGTTTTTTTTTTGTCTAGCCAA GGACATTATATAATGTCCTTGGTCTAGCCAACCCACAAAAAAAACATGAC AAAGAAGAAAGCCCGACATTAACCCCGAATTAAGGTGTATGTACCCCGAC TTGTAGCATATGTACCCCGACTTGTAGCGTATGTACCCCGACTTGTAGCG TATGTACCCCTACTTGTAGGGTATGTACCCCTACTTGTAGCGTATGTACC CCGACCTGTAGCGTATGTACCCCGACCTGTAGCATATGTACCCCGACCTG TAGCGTATGTACCCCGACTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNAGCGTATGTACCCCGACTTGTTGCGTATGTATC CCGACCTTAAGGTCTCATTCTTGTATTACTCCGAGTGGGTACCCTAGAAG AGTCCGTTGCCCAAAATAAGAACGGCTGCATATACGTGTGTCTATATCGG TTTAAATCCCTTTTAGCTGGCCCAGCTGATATCAAGCGTCAAACTGATGA AAGCTTGTTTGTAACGAAAGAAACTAACAGGTAAAGTTCGGCAGCCGCGC GCGAGGTCGGACGTCCACAGCCGGACATTGGCGGTAATTCGGTCGATCAC TTTCAGCTGCAAAGTACCTATTTAGGGGGTCTAGCAAAGTGCCGTTTGTA ATTGCCATAAAAAGGTATTGTATGCCAACTGGTAGTTGGCAATTTTTTAA AATGATCTAGGGTAGATGAGCTCAACAGAGAATGAATGACATTGGTGCAT TTCTTATAGCTTCATTGCGAACGCGCTCATGTAAAACACGTTTTANNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCGTATGTACCCCGAC TTGTAGCGTATGTACCCCGACTTGTAGCGTATGTACCCCGACCTGAAGCG TATGTGACCCAACTTGTAGCGTATGTACCCCGACTTGTAGCGTTTAAATG GTCCTTTCCAAAGATACTCTCCAAGCAGAGGAANGTCCGTTTTCAGATAT AAACCATCATTGCATCTTAGTGCATCATTTAACATTTAAAGATGTTTATC AACACAGTACAGCGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGACT ATGTTCGCATCGTCTTGCTCCTCGTTGCCTACTACCACATGCTTGATGAC CCTGTTATCGGCTCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAAGT AAACNTGAATTATATCAGTTGATCATCTTCTCTATCCAAATAACAAGTTC AAAGTATGAAAGTCTTATCTTAGAAAAGAAGGCTATTGTAGCATTTCCTC ATAAACTATGTGAATGAGGCTCTCAATTATGCAAAATATGTATTCATTTG CATATTGCTTTCTATCGATATTCCTCTCTTTCTCAGTTACCTATGTTACG TGTTTGAGAGTCCTATAATGGAGTGCAACAGATTTATAAACTTTCCTTAT TAATTATGCAAATTACCTACTTATTTGTATAATTAGCATGCGATTTTGTC AATCATCACTACCAACGATCTACCTACCAAATATTATGACGATCCGTCAA CGCTTTCTTGAGATATTCACTTTCCAAATCGGCTCCTGCAGTTCCAACTG CTATGGGGCCCAAACCTTCACAACATACTTCTCCCAGGTCCTATCTACCA CTCAAAATCATGACCATAGCATGTCCACAACACGAGATATCAAACCCGGA AGTTCCGCTGCAGTACCATAGTAAGCCATTAGGGGCCCAAAATCGAATCT ACTCATTTTGAGGTCTCAAAAAGACCTACCCACATACCAAGTATCAAGAC AATCCATCCAGGTACTCTCGAGTTATACTGTCTACACACACACGCACACA CACGCACGCACACACACACACACACACACACACACACACACACACACGAA CACTGTACAAAACATACCCTTCTCGGCAAAGGTAATAATAAAACAGTGTT ACTCACATGTTACCATGTGATCGTCCGTTTTCAGATATAAACCATCATTG CATCTTAGTGCATCATTTAACATTTAAAGATGTTTATCAACACAGTACAG CGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGACTATGTTCGCATCG TCTTGCTCCTCGTTGCCTACTACCACATGCTTGATGACCCTGTTATCGGC TCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAAGTAAACGGCTATGC CGCCCGCTTGTTCAACCAATGTAAGACAATGAGATCAATATATGAACTAT TGCATTAGTTTACAGACTCTGAGATATTGCAGGAAAGGCTAGAAATAACA CTTAATTCCTTCATAAACATCTTTTGTCGTACAAAGGAGCTAACAATATT ATGGTAGATCCACATATCATCATGTTGGTTCAAAGACTCTGATAATTATC GCAAGCCATTGACAGTGTATAATGAGATCAAATCAAAAATAGTGCACGAC TTTCTTGTATAGTAGTATAGATAAACCAGGGAGTTAGACCATAGTCATAG AGCATGAGGTTTACTGTTAATGTTAGCAATAGAAGATAACAGTACGTTTG GCCGCACCGATCAATTTCCTCATTTTCGGACATTATAAAAAAATATTTAA TGTGGGCTGGGAGGAAAACTAACACATGACTATATTCAGTCCCTAGAGTT GTGTACACCAAAGGCGCAGACAGTATTATTCCATCAGACATTGTTATCGG GTTAATTTTCCCGTTCAGCAATTATCTTTTTGACTCCGAGAAGAAATTGA ACTTGCATGGCCTTACCTGGCCCATCTGAATTTCTTTGTTCCTTTACCGC AACGTTTGACTTCTTTTCCTCACTCTCCTTCTTTTTTATTTGCGAGAAAT GCCTCAGACCACACTACCCTTACAATAAAATGCAATAATCATGTACATTA TCACTAATACATTGTTGTACCTGTACGTCTGTAGGCACTCGTTTCGGGAG TCAGTTGGACATACTGGTAGATCTAGTGGGTACCTGTGGGCTGCTGACGG TGCTGTGTATGCTGTACCCGAGATGGGCCATGGTCTTCCAGGTCAGCACA GCACTGGACATCTCAAGCCACTGGATGCACTTTTACAGGTGCTTGTTAGA GGGTTTATTAAGTCTATCTTTATTATACATGAATATATATATACATATAT ATATATATATATACAGTATATATATATATGTATATAACAGAGAGAAAGAG AGATAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAAAGAGAGAGAGAGAGAGAGATGAGGTATCATGAAGAGGG TTTTAAATTTCATTTCTTTATTGGATTGGAGAGTTTGATCCCACAACCAT TGCAAACAAATAGAGCAACATTACAGCTTAACACTCCAGCTATTTCACCG GCACCCAAAGCTACATATGAAGGATTTTGGGCGATTTAGAATTCCTTAAT ATGTCACAGCTGTAACCCCGATTCACTAGAAAATACGGACCGTCCCAATA CACGATAATGGCTGTAAAGACTATTACTTTGAAATGAAGATTCGGGGTTT ACCTGTTACAACTTTTCTTTCCCCGAAGCACAATCTCACTGATGAAGTCT GCGACCCACAAGATGGCAAATTTCGCCAGCCCACTCCTGAACCTGTACTA CTCCAACTCGGTCAGTATTCAGAGTGTTAACATTTCATACTTCATGCTGA AATACATTGTGTAGATCAGAAGCTATCACTACTAGCTGTGACAACGACCT TATCTGCATGTTGACGATGACCTTTGTTGCATTTTCATTCCCAGAAGGGC TAAATGCCGTGCGTTTAATAAATAAAAGGGAAAAAGACAAGCATGTACTA TTTTACAATTTGTACCACTAAGTAACAATCAGATAATATTTTGTGGTTAA TTTGGGGGTATATAAAGGGTTTGGGGTATCATTTGAAAACTTGCACAGGC TGTAGAGACATGTCACATTTCTTCACATTCCAGCACTTTATGCGTGTCAT GTGCATTGGCAATCAGGCCTGTTACATCATGTTGTACCTGCGGTACTTCA CACCAGGACCATTTTGTGAGTCATCCGCCATTCAATGTGATTTGTATAAT ATAAATGAGACAAAACTGTATGAAGTTGTGTTGACATTATTAAATGATGT GGCNTTTATTAGATGATGTGGCGGGAAGGTTATATATAGTAGTTTTAAAC TCTGAAGATAAAAGCATTCCAGAGAAGGCATATGAAACTTCACATTGACT AAAATTACTTTTCTGGTAAAAATATTTTAACACAGGTTTGACCAATCCTC TGCTCTTCTTCCAGATAACTGAGGACCCAGTTGCTCGGCACACGTCACCT CCCGAAAGTGTAACGTAAGCATGAGGTCAAAGGTGGTTGAACGGGGGCCG GTACAGACTTTCAACCACCTTTGACCCGGTGCTGACGTCACATTTCTAGA AAGTGGTGTCTACTTAGCAACCGGGTCCTCCGTTATCCTGAGGGTTGGAG TGAAATGCTATTCCATGACGTTACGTACCAACACAATTGACCTTTTATGT TAGATCTCTTTCAAAGTTTTATTTCACTTTTGTCCATGTGAAGGGCCATT CACGAGAGTCGGTCTGTATGCAGTACTCTTCTACCTGTGTCTCCCTGTGG CACTGCTGAAGGCCTACATCAACTGTGTGCAGCTGCAGGAAGCAGTAAGG ACAATCACTGAAGTGGACATGCAAGAGAGAAAACAAGCGCTGGCATATTA AAGACAAAGACATTACCAGAACAAACCGGAAAATCCTTCCCAAATGGATT TCACTTGGAGAGGGTTTTTTCCAGGTTATTGGTGGATTGAAGACGAAACG TGGAAGCTCTGCATGTCATAAGACAGCGGGCCAATCGCGAGTCTCAAAAT ACCAGAAAGAGTTTCTACTTTCTGCCGTATCTTTCACGTGATGACTGGTG TGCGCTTAGGTAGTGGACCGCTTCATCTGCGAGGCAAACTAGTGGGCGGA TAGCTTTGTTTTTTTTTTTACATAAAATAATGTACATCCGCGCATACAAA GGCTGCTTCAGACAGATTTGGTTGAAAGCTTATAAACAATACATCCTTTC CCAACATTCTATAATTTCATGTATAGTGTGGATATAACGGTTACGTCCTG TTTACATTTTTGTCCAGCATACTACAAGGCAAAGATGTTGCAAACATGTA TTTTCTTGACATTATCATATCTGGACTTGCAAATGTAACACTATATAGGG TCAGTATATCATAGTTTTCTTTAAATTATAAATGTACGTGCGTTATAATG TGCAACTTGCTTTTCCGGCCTGGAACATTAATACGGAAGGAAGGGGCAAA AATATGGATAATAACCCTCTGATCCCGCGGCCTCAAAAAGGCCATGGGAC TACCTGTACGAGTGTCTTTATGACGTGGAAATAGGATATGAAGTAGATTA ATCATGCTGTCGCGAAAGTAGCAACTTAACTCTTGATGCACATAGAGACA CGCCAGTTGTGAAGTACCTGCTGTATGTAGAATATCTAGAGACGACTACA AATGCTGCATTCACGTGGGAATAAAAAGTGAGGTCAAAATACT

Coding sequence (CDS) from alignment at Sc0000086:548813..555855-

>Blg00309.2 ID=Blg00309.2|Name=Blg00309.2|organism=Branchiostoma lanceolatum|type=CDS|length=675bp|location=Sequence derived from alignment at Sc0000086:548813..555855- (Branchiostoma lanceolatum)
ATGGACAACCGAGACGACAACATGGGGCAGTACGAAGTGTTGACGTTTGT
TCCCAATGTAATAGACTATGTTCGCATCGTCTTGCTCCTCGTTGCCTACT
ACCACATGCTTGATGACCCTGTTATCGGCTCCGTGTGCTACTTCAGTAAC
GTCATCCTAGATGAAGTAAACGGCTATGCCGCCCGCTTGTTCAACCAATG
CACTCGTTTCGGGAGTCAGTTGGACATACTGGTAGATCTAGTGGGTACCT
GTGGGCTGCTGACGGTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTC
TTCCAGGTCAGCACAGCACTGGACATCTCAAGCCACTGGATGCACTTTTA
CAGCACAATCTCACTGATGAAGTCTGCGACCCACAAGATGGCAAATTTCG
CCAGCCCACTCCTGAACCTGTACTACTCCAACTCGCACTTTATGCGTGTC
ATGTGCATTGGCAATCAGGCCTGTTACATCATGTTGTACCTGCGGTACTT
CACACCAGGACCATTTTGGCCATTCACGAGAGTCGGTCTGTATGCAGTAC
TCTTCTACCTGTGTCTCCCTGTGGCACTGCTGAAGGCCTACATCAACTGT
GTGCAGCTGCAGGAAGCAGTAAGGACAATCACTGAAGTGGACATGCAAGA
GAGAAAACAAGCGCTGGCATATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.2Blg00309.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.2-exon-Sc0000086-1570713199:555534..555855Blg00309.2-exon-Sc0000086-1570713199:555534..555855Branchiostoma lanceolatumexon
Blg00309.2-exon-Sc0000086-1570713199:552186..552320Blg00309.2-exon-Sc0000086-1570713199:552186..552320Branchiostoma lanceolatumexon
Blg00309.2-exon-Sc0000086-1570713199:551318..551471Blg00309.2-exon-Sc0000086-1570713199:551318..551471Branchiostoma lanceolatumexon
Blg00309.2-exon-Sc0000086-1570713199:550746..550827Blg00309.2-exon-Sc0000086-1570713199:550746..550827Branchiostoma lanceolatumexon
Blg00309.2-exon-Sc0000086-1570713199:550341..550422Blg00309.2-exon-Sc0000086-1570713199:550341..550422Branchiostoma lanceolatumexon
Blg00309.2-exon-Sc0000086-1570713199:548813..549812Blg00309.2-exon-Sc0000086-1570713199:548813..549812Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:548813..555855 -
Properties
Property NameValue
GeneIDBlg00309