Blg00309.1 (mRNA) - B. lanceolatum

Overview
NameBlg00309.1
Unique NameBlg00309.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:548813..555707-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00309.1 ID=Blg00309.1|Name=Blg00309.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6895bp|location=Sequence derived from alignment at Sc0000086:548813..555707- (Branchiostoma lanceolatum)
GAGAACTTTAAGCTATATTTTCATATACAAATATACCACCGATAAGCTTC CCCTTTCGCATTTTTAACCTCTCCATATCGACCTGTGTCTATATATACTA ATCTCATTTCATGGACAACCGAGACGACAACATGGGGCAGTACGAAGTGT TGACGTTTGTTCCCAATGTAATAGGTAAGTCTGAGGACTGGCATTTAAGA TAACTCTCCAAGCAGAGGAGTGGGTCCGGCAGGTTTTTGACGTGTTTTTA GGCGTTTTTGTCGAGCTTTCTACTTTGTCATGTTTTTTTTTTGTCTAGCC AAGGACATTATATAATGTCCTTGGTCTAGCCAACCCACAAAAAAAACATG ACAAAGAAGAAAGCCCGACATTAACCCCGAATTAAGGTGTATGTACCCCG ACTTGTAGCATATGTACCCCGACTTGTAGCGTATGTACCCCGACTTGTAG CGTATGTACCCCTACTTGTAGGGTATGTACCCCTACTTGTAGCGTATGTA CCCCGACCTGTAGCGTATGTACCCCGACCTGTAGCATATGTACCCCGACC TGTAGCGTATGTACCCCGACTTGTNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNAGCGTATGTACCCCGACTTGTTGCGTATGTA TCCCGACCTTAAGGTCTCATTCTTGTATTACTCCGAGTGGGTACCCTAGA AGAGTCCGTTGCCCAAAATAAGAACGGCTGCATATACGTGTGTCTATATC GGTTTAAATCCCTTTTAGCTGGCCCAGCTGATATCAAGCGTCAAACTGAT GAAAGCTTGTTTGTAACGAAAGAAACTAACAGGTAAAGTTCGGCAGCCGC GCGCGAGGTCGGACGTCCACAGCCGGACATTGGCGGTAATTCGGTCGATC ACTTTCAGCTGCAAAGTACCTATTTAGGGGGTCTAGCAAAGTGCCGTTTG TAATTGCCATAAAAAGGTATTGTATGCCAACTGGTAGTTGGCAATTTTTT AAAATGATCTAGGGTAGATGAGCTCAACAGAGAATGAATGACATTGGTGC ATTTCTTATAGCTTCATTGCGAACGCGCTCATGTAAAACACGTTTTANNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCGTATGTACCCCG ACTTGTAGCGTATGTACCCCGACTTGTAGCGTATGTACCCCGACCTGAAG CGTATGTGACCCAACTTGTAGCGTATGTACCCCGACTTGTAGCGTTTAAA TGGTCCTTTCCAAAGATACTCTCCAAGCAGAGGAANGTCCGTTTTCAGAT ATAAACCATCATTGCATCTTAGTGCATCATTTAACATTTAAAGATGTTTA TCAACACAGTACAGCGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGA CTATGTTCGCATCGTCTTGCTCCTCGTTGCCTACTACCACATGCTTGATG ACCCTGTTATCGGCTCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAA GTAAACNTGAATTATATCAGTTGATCATCTTCTCTATCCAAATAACAAGT TCAAAGTATGAAAGTCTTATCTTAGAAAAGAAGGCTATTGTAGCATTTCC TCATAAACTATGTGAATGAGGCTCTCAATTATGCAAAATATGTATTCATT TGCATATTGCTTTCTATCGATATTCCTCTCTTTCTCAGTTACCTATGTTA CGTGTTTGAGAGTCCTATAATGGAGTGCAACAGATTTATAAACTTTCCTT ATTAATTATGCAAATTACCTACTTATTTGTATAATTAGCATGCGATTTTG TCAATCATCACTACCAACGATCTACCTACCAAATATTATGACGATCCGTC AACGCTTTCTTGAGATATTCACTTTCCAAATCGGCTCCTGCAGTTCCAAC TGCTATGGGGCCCAAACCTTCACAACATACTTCTCCCAGGTCCTATCTAC CACTCAAAATCATGACCATAGCATGTCCACAACACGAGATATCAAACCCG GAAGTTCCGCTGCAGTACCATAGTAAGCCATTAGGGGCCCAAAATCGAAT CTACTCATTTTGAGGTCTCAAAAAGACCTACCCACATACCAAGTATCAAG ACAATCCATCCAGGTACTCTCGAGTTATACTGTCTACACACACACGCACA CACACGCACGCACACACACACACACACACACACACACACACACACACACG AACACTGTACAAAACATACCCTTCTCGGCAAAGGTAATAATAAAACAGTG TTACTCACATGTTACCATGTGATCGTCCGTTTTCAGATATAAACCATCAT TGCATCTTAGTGCATCATTTAACATTTAAAGATGTTTATCAACACAGTAC AGCGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGACTATGTTCGCAT CGTCTTGCTCCTCGTTGCCTACTACCACATGCTTGATGACCCTGTTATCG GCTCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAAGTAAACGGCTAT GCCGCCCGCTTGTTCAACCAATGTAAGACAATGAGATCAATATATGAACT ATTGCATTAGTTTACAGACTCTGAGATATTGCAGGAAAGGCTAGAAATAA CACTTAATTCCTTCATAAACATCTTTTGTCGTACAAAGGAGCTAACAATA TTATGGTAGATCCACATATCATCATGTTGGTTCAAAGACTCTGATAATTA TCGCAAGCCATTGACAGTGTATAATGAGATCAAATCAAAAATAGTGCACG ACTTTCTTGTATAGTAGTATAGATAAACCAGGGAGTTAGACCATAGTCAT AGAGCATGAGGTTTACTGTTAATGTTAGCAATAGAAGATAACAGTACGTT TGGCCGCACCGATCAATTTCCTCATTTTCGGACATTATAAAAAAATATTT AATGTGGGCTGGGAGGAAAACTAACACATGACTATATTCAGTCCCTAGAG TTGTGTACACCAAAGGCGCAGACAGTATTATTCCATCAGACATTGTTATC GGGTTAATTTTCCCGTTCAGCAATTATCTTTTTGACTCCGAGAAGAAATT GAACTTGCATGGCCTTACCTGGCCCATCTGAATTTCTTTGTTCCTTTACC GCAACGTTTGACTTCTTTTCCTCACTCTCCTTCTTTTTTATTTGCGAGAA ATGCCTCAGACCACACTACCCTTACAATAAAATGCAATAATCATGTACAT TATCACTAATACATTGTTGTACCTGTACGTCTGTAGGCACTCGTTTCGGG AGTCAGTTGGACATACTGGTAGATCTAGTGGGTACCTGTGGGCTGCTGAC GGTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTCTTCCAGGTCAGCA CAGCACTGGACATCTCAAGCCACTGGATGCACTTTTACAGGTGCTTGTTA GAGGGTTTATTAAGTCTATCTTTATTATACATGAATATATATATACATAT ATATATATATATATACAGTATATATATATATGTATATAACAGAGAGAAAG AGAGATAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGATGAGGTATCATGAAGAG GGTTTTAAATTTCATTTCTTTATTGGATTGGAGAGTTTGATCCCACAACC ATTGCAAACAAATAGAGCAACATTACAGCTTAACACTCCAGCTATTTCAC CGGCACCCAAAGCTACATATGAAGGATTTTGGGCGATTTAGAATTCCTTA ATATGTCACAGCTGTAACCCCGATTCACTAGAAAATACGGACCGTCCCAA TACACGATAATGGCTGTAAAGACTATTACTTTGAAATGAAGATTCGGGGT TTACCTGTTACAACTTTTCTTTCCCCGAAGCACAATCTCACTGATGAAGT CTGCGACCCACAAGATGGCAAATTTCGCCAGCCCACTCCTGAACCTGTAC TACTCCAACTCGGTCAGTATTCAGAGTGTTAACATTTCATACTTCATGCT GAAATACATTGTGTAGATCAGAAGCTATCACTACTAGCTGTGACAACGAC CTTATCTGCATGTTGACGATGACCTTTGTTGCATTTTCATTCCCAGAAGG GCTAAATGCCGTGCGTTTAATAAATAAAAGGGAAAAAGACAAGCATGTAC TATTTTACAATTTGTACCACTAAGTAACAATCAGATAATATTTTGTGGTT AATTTGGGGGTATATAAAGGGTTTGGGGTATCATTTGAAAACTTGCACAG GCTGTAGAGACATGTCACATTTCTTCACATTCCAGCACTTTATGCGTGTC ATGTGCATTGGCAATCAGGCCTGTTACATCATGTTGTACCTGCGGTACTT CACACCAGGACCATTTTGTGAGTCATCCGCCATTCAATGTGATTTGTATA ATATAAATGAGACAAAACTGTATGAAGTTGTGTTGACATTATTAAATGAT GTGGCNTTTATTAGATGATGTGGCGGGAAGGTTATATATAGTAGTTTTAA ACTCTGAAGATAAAAGCATTCCAGAGAAGGCATATGAAACTTCACATTGA CTAAAATTACTTTTCTGGTAAAAATATTTTAACACAGGTTTGACCAATCC TCTGCTCTTCTTCCAGATAACTGAGGACCCAGTTGCTCGGCACACGTCAC CTCCCGAAAGTGTAACGTAAGCATGAGGTCAAAGGTGGTTGAACGGGGGC CGGTACAGACTTTCAACCACCTTTGACCCGGTGCTGACGTCACATTTCTA GAAAGTGGTGTCTACTTAGCAACCGGGTCCTCCGTTATCCTGAGGGTTGG AGTGAAATGCTATTCCATGACGTTACGTACCAACACAATTGACCTTTTAT GTTAGATCTCTTTCAAAGTTTTATTTCACTTTTGTCCATGTGAAGGGCCA TTCACGAGAGTCGGTCTGTATGCAGTACTCTTCTACCTGTGTCTCCCTGT GGCACTGCTGAAGGCCTACATCAACTGTGTGCAGCTGCAGGAAGCAGTAA GGACAATCACTGAAGTGGACATGCAAGAGAGAAAACAAGCGCTGGCATAT TAAAGACAAAGACATTACCAGAACAAACCGGAAAATCCTTCCCAAATGGA TTTCACTTGGAGAGGGTTTTTTCCAGGTTATTGGTGGATTGAAGACGAAA CGTGGAAGCTCTGCATGTCATAAGACAGCGGGCCAATCGCGAGTCTCAAA ATACCAGAAAGAGTTTCTACTTTCTGCCGTATCTTTCACGTGATGACTGG TGTGCGCTTAGGTAGTGGACCGCTTCATCTGCGAGGCAAACTAGTGGGCG GATAGCTTTGTTTTTTTTTTTACATAAAATAATGTACATCCGCGCATACA AAGGCTGCTTCAGACAGATTTGGTTGAAAGCTTATAAACAATACATCCTT TCCCAACATTCTATAATTTCATGTATAGTGTGGATATAACGGTTACGTCC TGTTTACATTTTTGTCCAGCATACTACAAGGCAAAGATGTTGCAAACATG TATTTTCTTGACATTATCATATCTGGACTTGCAAATGTAACACTATATAG GGTCAGTATATCATAGTTTTCTTTAAATTATAAATGTACGTGCGTTATAA TGTGCAACTTGCTTTTCCGGCCTGGAACATTAATACGGAAGGAAGGGGCA AAAATATGGATAATAACCCTCTGATCCCGCGGCCTCAAAAAGGCCATGGG ACTACCTGTACGAGTGTCTTTATGACGTGGAAATAGGATATGAAGTAGAT TAATCATGCTGTCGCGAAAGTAGCAACTTAACTCTTGATGCACATAGAGA CACGCCAGTTGTGAAGTACCTGCTGTATGTAGAATATCTAGAGACGACTA CAAATGCTGCATTCACGTGGGAATAAAAAGTGAGGTCAAAATACT

Coding sequence (CDS) from alignment at Sc0000086:548813..555707-

>Blg00309.1 ID=Blg00309.1|Name=Blg00309.1|organism=Branchiostoma lanceolatum|type=CDS|length=501bp|location=Sequence derived from alignment at Sc0000086:548813..555707- (Branchiostoma lanceolatum)
ATGGACAACCGAGACGACAACATGGGGCAGTACGAAGTGTTGACGTTTGT
TCCCAATGTAATAGACTATGTTCGCATCGTCTTGCTCCTCGTTGCCTACT
ACCACATGCTTGATGACCCTGTTATCGGCTCCGTGTGCTACTTCAGTAAC
GTCATCCTAGATGAAGTAAACGGCTATGCCGCCCGCTTGTTCAACCAATG
CACTCGTTTCGGGAGTCAGTTGGACATACTGGTAGATCTAGTGGGTACCT
GTGGGCTGCTGACGGTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTC
TTCCAGGTCAGCACAGCACTGGACATCTCAAGCCACTGGATGCACTTTTA
CAGCACAATCTCACTGATGAAGTCTGCGACCCACAAGATGGCAAATTTCG
CCAGCCCACTCCTGAACCTGTACTACTCCAACTCGGGCCATTCACGAGAG
TCGGTCTGTATGCAGTACTCTTCTACCTGTGTCTCCCTGTGGCACTGCTG
A
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.1Blg00309.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.1-exon-Sc0000086-1570713199:555534..555707Blg00309.1-exon-Sc0000086-1570713199:555534..555707Branchiostoma lanceolatumexon
Blg00309.1-exon-Sc0000086-1570713199:553268..553308Blg00309.1-exon-Sc0000086-1570713199:553268..553308Branchiostoma lanceolatumexon
Blg00309.1-exon-Sc0000086-1570713199:552186..552279Blg00309.1-exon-Sc0000086-1570713199:552186..552279Branchiostoma lanceolatumexon
Blg00309.1-exon-Sc0000086-1570713199:551318..551471Blg00309.1-exon-Sc0000086-1570713199:551318..551471Branchiostoma lanceolatumexon
Blg00309.1-exon-Sc0000086-1570713199:550746..550827Blg00309.1-exon-Sc0000086-1570713199:550746..550827Branchiostoma lanceolatumexon
Blg00309.1-exon-Sc0000086-1570713199:548813..549812Blg00309.1-exon-Sc0000086-1570713199:548813..549812Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:548813..555707 -
Properties
Property NameValue
GeneIDBlg00309