Blg00309.0 (mRNA) - B. lanceolatum

Overview
NameBlg00309.0
Unique NameBlg00309.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:548813..555559-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00309.0 ID=Blg00309.0|Name=Blg00309.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6747bp|location=Sequence derived from alignment at Sc0000086:548813..555559- (Branchiostoma lanceolatum)
GTTGACGTTTGTTCCCAATGTAATAGGTAAGTCTGAGGACTGGCATTTAA GATAACTCTCCAAGCAGAGGAGTGGGTCCGGCAGGTTTTTGACGTGTTTT TAGGCGTTTTTGTCGAGCTTTCTACTTTGTCATGTTTTTTTTTTGTCTAG CCAAGGACATTATATAATGTCCTTGGTCTAGCCAACCCACAAAAAAAACA TGACAAAGAAGAAAGCCCGACATTAACCCCGAATTAAGGTGTATGTACCC CGACTTGTAGCATATGTACCCCGACTTGTAGCGTATGTACCCCGACTTGT AGCGTATGTACCCCTACTTGTAGGGTATGTACCCCTACTTGTAGCGTATG TACCCCGACCTGTAGCGTATGTACCCCGACCTGTAGCATATGTACCCCGA CCTGTAGCGTATGTACCCCGACTTGTNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNAGCGTATGTACCCCGACTTGTTGCGTATG TATCCCGACCTTAAGGTCTCATTCTTGTATTACTCCGAGTGGGTACCCTA GAAGAGTCCGTTGCCCAAAATAAGAACGGCTGCATATACGTGTGTCTATA TCGGTTTAAATCCCTTTTAGCTGGCCCAGCTGATATCAAGCGTCAAACTG ATGAAAGCTTGTTTGTAACGAAAGAAACTAACAGGTAAAGTTCGGCAGCC GCGCGCGAGGTCGGACGTCCACAGCCGGACATTGGCGGTAATTCGGTCGA TCACTTTCAGCTGCAAAGTACCTATTTAGGGGGTCTAGCAAAGTGCCGTT TGTAATTGCCATAAAAAGGTATTGTATGCCAACTGGTAGTTGGCAATTTT TTAAAATGATCTAGGGTAGATGAGCTCAACAGAGAATGAATGACATTGGT GCATTTCTTATAGCTTCATTGCGAACGCGCTCATGTAAAACACGTTTTAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCGTATGTACCC CGACTTGTAGCGTATGTACCCCGACTTGTAGCGTATGTACCCCGACCTGA AGCGTATGTGACCCAACTTGTAGCGTATGTACCCCGACTTGTAGCGTTTA AATGGTCCTTTCCAAAGATACTCTCCAAGCAGAGGAANGTCCGTTTTCAG ATATAAACCATCATTGCATCTTAGTGCATCATTTAACATTTAAAGATGTT TATCAACACAGTACAGCGTGATTAATGTCCTTATGTTTTCTTCTTCAACA GACTATGTTCGCATCGTCTTGCTCCTCGTTGCCTACTACCACATGCTTGA TGACCCTGTTATCGGCTCCGTGTGCTACTTCAGTAACGTCATCCTAGATG AAGTAAACNTGAATTATATCAGTTGATCATCTTCTCTATCCAAATAACAA GTTCAAAGTATGAAAGTCTTATCTTAGAAAAGAAGGCTATTGTAGCATTT CCTCATAAACTATGTGAATGAGGCTCTCAATTATGCAAAATATGTATTCA TTTGCATATTGCTTTCTATCGATATTCCTCTCTTTCTCAGTTACCTATGT TACGTGTTTGAGAGTCCTATAATGGAGTGCAACAGATTTATAAACTTTCC TTATTAATTATGCAAATTACCTACTTATTTGTATAATTAGCATGCGATTT TGTCAATCATCACTACCAACGATCTACCTACCAAATATTATGACGATCCG TCAACGCTTTCTTGAGATATTCACTTTCCAAATCGGCTCCTGCAGTTCCA ACTGCTATGGGGCCCAAACCTTCACAACATACTTCTCCCAGGTCCTATCT ACCACTCAAAATCATGACCATAGCATGTCCACAACACGAGATATCAAACC CGGAAGTTCCGCTGCAGTACCATAGTAAGCCATTAGGGGCCCAAAATCGA ATCTACTCATTTTGAGGTCTCAAAAAGACCTACCCACATACCAAGTATCA AGACAATCCATCCAGGTACTCTCGAGTTATACTGTCTACACACACACGCA CACACACGCACGCACACACACACACACACACACACACACACACACACACA CGAACACTGTACAAAACATACCCTTCTCGGCAAAGGTAATAATAAAACAG TGTTACTCACATGTTACCATGTGATCGTCCGTTTTCAGATATAAACCATC ATTGCATCTTAGTGCATCATTTAACATTTAAAGATGTTTATCAACACAGT ACAGCGTGATTAATGTCCTTATGTTTTCTTCTTCAACAGACTATGTTCGC ATCGTCTTGCTCCTCGTTGCCTACTACCACATGCTTGATGACCCTGTTAT CGGCTCCGTGTGCTACTTCAGTAACGTCATCCTAGATGAAGTAAACGGCT ATGCCGCCCGCTTGTTCAACCAATGTAAGACAATGAGATCAATATATGAA CTATTGCATTAGTTTACAGACTCTGAGATATTGCAGGAAAGGCTAGAAAT AACACTTAATTCCTTCATAAACATCTTTTGTCGTACAAAGGAGCTAACAA TATTATGGTAGATCCACATATCATCATGTTGGTTCAAAGACTCTGATAAT TATCGCAAGCCATTGACAGTGTATAATGAGATCAAATCAAAAATAGTGCA CGACTTTCTTGTATAGTAGTATAGATAAACCAGGGAGTTAGACCATAGTC ATAGAGCATGAGGTTTACTGTTAATGTTAGCAATAGAAGATAACAGTACG TTTGGCCGCACCGATCAATTTCCTCATTTTCGGACATTATAAAAAAATAT TTAATGTGGGCTGGGAGGAAAACTAACACATGACTATATTCAGTCCCTAG AGTTGTGTACACCAAAGGCGCAGACAGTATTATTCCATCAGACATTGTTA TCGGGTTAATTTTCCCGTTCAGCAATTATCTTTTTGACTCCGAGAAGAAA TTGAACTTGCATGGCCTTACCTGGCCCATCTGAATTTCTTTGTTCCTTTA CCGCAACGTTTGACTTCTTTTCCTCACTCTCCTTCTTTTTTATTTGCGAG AAATGCCTCAGACCACACTACCCTTACAATAAAATGCAATAATCATGTAC ATTATCACTAATACATTGTTGTACCTGTACGTCTGTAGGCACTCGTTTCG GGAGTCAGTTGGACATACTGGTAGATCTAGTGGGTACCTGTGGGCTGCTG ACGGTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTCTTCCAGGTCAG CACAGCACTGGACATCTCAAGCCACTGGATGCACTTTTACAGGTGCTTGT TAGAGGGTTTATTAAGTCTATCTTTATTATACATGAATATATATATACAT ATATATATATATATATACAGTATATATATATATGTATATAACAGAGAGAA AGAGAGATAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGATGAGGTATCATGAAG AGGGTTTTAAATTTCATTTCTTTATTGGATTGGAGAGTTTGATCCCACAA CCATTGCAAACAAATAGAGCAACATTACAGCTTAACACTCCAGCTATTTC ACCGGCACCCAAAGCTACATATGAAGGATTTTGGGCGATTTAGAATTCCT TAATATGTCACAGCTGTAACCCCGATTCACTAGAAAATACGGACCGTCCC AATACACGATAATGGCTGTAAAGACTATTACTTTGAAATGAAGATTCGGG GTTTACCTGTTACAACTTTTCTTTCCCCGAAGCACAATCTCACTGATGAA GTCTGCGACCCACAAGATGGCAAATTTCGCCAGCCCACTCCTGAACCTGT ACTACTCCAACTCGGTCAGTATTCAGAGTGTTAACATTTCATACTTCATG CTGAAATACATTGTGTAGATCAGAAGCTATCACTACTAGCTGTGACAACG ACCTTATCTGCATGTTGACGATGACCTTTGTTGCATTTTCATTCCCAGAA GGGCTAAATGCCGTGCGTTTAATAAATAAAAGGGAAAAAGACAAGCATGT ACTATTTTACAATTTGTACCACTAAGTAACAATCAGATAATATTTTGTGG TTAATTTGGGGGTATATAAAGGGTTTGGGGTATCATTTGAAAACTTGCAC AGGCTGTAGAGACATGTCACATTTCTTCACATTCCAGCACTTTATGCGTG TCATGTGCATTGGCAATCAGGCCTGTTACATCATGTTGTACCTGCGGTAC TTCACACCAGGACCATTTTGTGAGTCATCCGCCATTCAATGTGATTTGTA TAATATAAATGAGACAAAACTGTATGAAGTTGTGTTGACATTATTAAATG ATGTGGCNTTTATTAGATGATGTGGCGGGAAGGTTATATATAGTAGTTTT AAACTCTGAAGATAAAAGCATTCCAGAGAAGGCATATGAAACTTCACATT GACTAAAATTACTTTTCTGGTAAAAATATTTTAACACAGGTTTGACCAAT CCTCTGCTCTTCTTCCAGATAACTGAGGACCCAGTTGCTCGGCACACGTC ACCTCCCGAAAGTGTAACGTAAGCATGAGGTCAAAGGTGGTTGAACGGGG GCCGGTACAGACTTTCAACCACCTTTGACCCGGTGCTGACGTCACATTTC TAGAAAGTGGTGTCTACTTAGCAACCGGGTCCTCCGTTATCCTGAGGGTT GGAGTGAAATGCTATTCCATGACGTTACGTACCAACACAATTGACCTTTT ATGTTAGATCTCTTTCAAAGTTTTATTTCACTTTTGTCCATGTGAAGGGC CATTCACGAGAGTCGGTCTGTATGCAGTACTCTTCTACCTGTGTCTCCCT GTGGCACTGCTGAAGGCCTACATCAACTGTGTGCAGCTGCAGGAAGCAGT AAGGACAATCACTGAAGTGGACATGCAAGAGAGAAAACAAGCGCTGGCAT ATTAAAGACAAAGACATTACCAGAACAAACCGGAAAATCCTTCCCAAATG GATTTCACTTGGAGAGGGTTTTTTCCAGGTTATTGGTGGATTGAAGACGA AACGTGGAAGCTCTGCATGTCATAAGACAGCGGGCCAATCGCGAGTCTCA AAATACCAGAAAGAGTTTCTACTTTCTGCCGTATCTTTCACGTGATGACT GGTGTGCGCTTAGGTAGTGGACCGCTTCATCTGCGAGGCAAACTAGTGGG CGGATAGCTTTGTTTTTTTTTTTACATAAAATAATGTACATCCGCGCATA CAAAGGCTGCTTCAGACAGATTTGGTTGAAAGCTTATAAACAATACATCC TTTCCCAACATTCTATAATTTCATGTATAGTGTGGATATAACGGTTACGT CCTGTTTACATTTTTGTCCAGCATACTACAAGGCAAAGATGTTGCAAACA TGTATTTTCTTGACATTATCATATCTGGACTTGCAAATGTAACACTATAT AGGGTCAGTATATCATAGTTTTCTTTAAATTATAAATGTACGTGCGTTAT AATGTGCAACTTGCTTTTCCGGCCTGGAACATTAATACGGAAGGAAGGGG CAAAAATATGGATAATAACCCTCTGATCCCGCGGCCTCAAAAAGGCCATG GGACTACCTGTACGAGTGTCTTTATGACGTGGAAATAGGATATGAAGTAG ATTAATCATGCTGTCGCGAAAGTAGCAACTTAACTCTTGATGCACATAGA GACACGCCAGTTGTGAAGTACCTGCTGTATGTAGAATATCTAGAGACGAC TACAAATGCTGCATTCACGTGGGAATAAAAAGTGAGGTCAAAATACT

Coding sequence (CDS) from alignment at Sc0000086:548813..555559-

>Blg00309.0 ID=Blg00309.0|Name=Blg00309.0|organism=Branchiostoma lanceolatum|type=CDS|length=570bp|location=Sequence derived from alignment at Sc0000086:548813..555559- (Branchiostoma lanceolatum)
ATGCTTGATGACCCTGTTATCGGCTCCGTGTGCTACTTCAGTAACGTCAT
CCTAGATGAAGTAAACGGCTATGCCGCCCGCTTGTTCAACCAATGCACTC
GTTTCGGGAGTCAGTTGGACATACTGGTAGATCTAGTGGGTACCTGTGGG
CTGCTGACGGTGCTGTGTATGCTGTACCCGAGATGGGCCATGGTCTTCCA
GGTCAGCACAGCACTGGACATCTCAAGCCACTGGATGCACTTTTACAGCA
CAATCTCACTGATGAAGTCTGCGACCCACAAGATGGCAAATTTCGCCAGC
CCACTCCTGAACCTGTACTACTCCAACTCGCACTTTATGCGTGTCATGTG
CATTGGCAATCAGGCCTGTTACATCATGTTGTACCTGCGGTACTTCACAC
CAGGACCATTTTGGCCATTCACGAGAGTCGGTCTGTATGCAGTACTCTTC
TACCTGTGTCTCCCTGTGGCACTGCTGAAGGCCTACATCAACTGTGTGCA
GCTGCAGGAAGCAGTAAGGACAATCACTGAAGTGGACATGCAAGAGAGAA
AACAAGCGCTGGCATATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.0Blg00309.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00309.0-exon-Sc0000086-1570713199:555534..555559Blg00309.0-exon-Sc0000086-1570713199:555534..555559Branchiostoma lanceolatumexon
Blg00309.0-exon-Sc0000086-1570713199:553268..553308Blg00309.0-exon-Sc0000086-1570713199:553268..553308Branchiostoma lanceolatumexon
Blg00309.0-exon-Sc0000086-1570713199:552186..552279Blg00309.0-exon-Sc0000086-1570713199:552186..552279Branchiostoma lanceolatumexon
Blg00309.0-exon-Sc0000086-1570713199:551318..551471Blg00309.0-exon-Sc0000086-1570713199:551318..551471Branchiostoma lanceolatumexon
Blg00309.0-exon-Sc0000086-1570713199:550746..550827Blg00309.0-exon-Sc0000086-1570713199:550746..550827Branchiostoma lanceolatumexon
Blg00309.0-exon-Sc0000086-1570713199:550341..550422Blg00309.0-exon-Sc0000086-1570713199:550341..550422Branchiostoma lanceolatumexon
Blg00309.0-exon-Sc0000086-1570713199:548813..549812Blg00309.0-exon-Sc0000086-1570713199:548813..549812Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:548813..555559 -
Properties
Property NameValue
GeneIDBlg00309