Blg00303.1 (mRNA) - B. lanceolatum

Overview
NameBlg00303.1
Unique NameBlg00303.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:11804..18145+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00303.1 ID=Blg00303.1|Name=Blg00303.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6342bp|location=Sequence derived from alignment at Sc0000086:11804..18145+ (Branchiostoma lanceolatum)
GTTGGGTTGTTTTGTGCGGGCTTAGTATTAAAATCAGCCAATTTTTCTAT TGTTTTATTGGTAAAGAATCTTGTTGTATAGAATAAAACTTTCAAGGGAA ATTCATCACGAAGCCATGTATTTCTTCTTACAGCCTTAGAAATTCCTGGG CATCCTACCAGTGCCACCGACGACTCCAACTTACAAGCAATCACAGCCGA ACCAAAGACGTACGCCTACGAGGGCGACACCGCGGAGCTCATCTTCTACA TGACCGTCCAATCCGATCTTCCATCAGATGGACTTAACGAAATGACAGTC TGGTCGTCTGCCGACAGACAGAACTATTGTGAGATGTACCAGGGTGAAAC AAAATGCCACGGCGACCGGTTCAGCAATGGGGCTGAGATGTGGGAGACCT GGTTTCCTGAATTGGACGGAGGGCACACGAGGCACGGGAGGATCGTGTTG CTACTGAGAAACGTCTCCCTCAGTGATACAGGCCGGTACGAGGGGGAGAT AAAGACGACCGACGACATTAACAACGTCAACACCATGCTGGTTGTGAAAG GTAAGAGTGTAGTATTACAATCCACGTTTACACATTGCATTATCTAGGCT ATTGAGATGAGGATGTTCCTGTCAACAAGAATTGTTTGCACCATTCACAG GATGTTCCTGTCAATAAGAATGGCACAATTGTGTTTCTGTTGAATATTTT GTGGACTTTATTGACAGGAACATTCTGTCAATAGCCATATCGTTATGAGT TTGGTTTCTGCAGCATTCTACGTACCCGTCTCTTAGCGTCACAGAAACAA TATAATGTACAATCTGTTACACAATTTTAATTAATTTGAGACAATAGGCA TGCTGAGCATTAAACAATGTTATCCATATGTTATTCCTTTATTCAGAGGA TTCTGAGAGACCGAGGGACGAAGACACAGCAAAGCAAGGTGAATATGTTA TTTCATGTGTAAATTTCTGACACAACTATTTTTTATCAATGAATCATTTC GAAGAGAATTTTCACATGTGTCGTTTCTATAATCTAAATACTCCGTCAAC CCGTCTTCGCATTGCATAGAATATGGCACAAAATTACAACAAAAAGAAAT CGTCATTTGATGATTAATCTATCTACTATTATTTACGACAGGTTGGACCA CTATGTGGTGGCAGTGGTTTGGAGTATACGGTGCAGGGGTCCTGTCAGGC GTGATTTTCGCTTTCATCGGCGTGAAGGTTGCACGCCACCGCAAAAATAG CCAGAAGTAAGTTCACTCTACATAACGTAGATATTTGGCGCAATAAAAGT TGTCCTCTATCATGGAAAGAGAAGCAACCTACTTCAGAAATACCTTTGAC AACACTGTAGAATTGACCTAACGTGGAATAATGCACAGTACATTGTAGAG TAGATTAGTTTTCACATAATTCACAGTCACGTATTCTAATACAATTGTTG AGCACCATGATTTTTAATTACCTCCGGGAAGGAGGGTCACCTCCTGAAGG AGTATTGTGGTTGTTCGCACGTTCGCAGCTACCACTCATGATCCCTTTGC TGCATTGGTATGTAACTTGGCATATGTCGTCTGCTAGTATACGCGAGATA ATCAAATAATGAAAGCTTTCTTTTTTACACCGTGTAACAACTTTTTGGGC TGGGTCTGGCTGGGTCTTTGCATCTTTAAATCAATATCCTTTTGATGGAT TTGTTTGAAATTGGATATGTCAGTAGTGAAAAGGGCATCGAATGACCGCA AACACCATACTTACTTCACGGAGGGTTGTGTTCTACGGACTCTTGTTGTT GTCGATGTTGATTGGGTTAACCTCGTGTAATGGCGGCTGTAGCACCGGCT TTGGTCCCTCACCGCCCTGTCGCTAAACTCATGTTCCTTTGTATCAATTT CCAGGCCATCGTCCGTACCTGTCTGATGCCAACTACTATGATGGCTCTGA TGTTTATACGGAAACACACGAGCTCCGACAGCAATAAAGGATGGAAGGGT CTCATCTTACTACATAGTAATAATAATATTGTATTTACTGCTTGTACAAT ATTACTGTATTGTGAAATTTAAAAATAATCAAGTACTTTTACTACATTAG TACTGCTATGCAAAAGTGTGATAATGTCTTCAGGGAATTCGGACACACTT TTGAACAATACTATAAGTCTTGTCGAATGTAACAATAAAATGTATTTTGG TTTCAGACTATATTCTTAGAGCAATAGCCGCACGTAGTGCATATAACATG GTATAATTTAGGGTAGACGACAGAGTACTAATGGTTGGATCTATTTCGGT ATTATTGTATATTGTATATATTTTCGGCTTCAAAGAACGTTACCCAGCAA TAGAGCCCAAACCTCAACTGTTTTTTATTTAATGACTACAGAGCTGTCTT TCATACTAGGTGAGGTACAACATATGTACATTCTACAGCACGTAGTAAAA ATTCCTGATGGACGAAAAGCGTTAGCTTGTTAGTTACTATACCGTGTAAG TGAATGATAAATACAAGAAAGACTGGGAATTGTGTACCTTTATCATTTTT ATCATTATGTATCAAACTGAATTCCGAAGCTATTTTAAATGTTTTCTAGT CATACATTCGTAAGACCCACCCGGAAGTAAGTTTTGTATGTGGTTGAAAT TCCCCTCGCGAGTCGTGCTGTCAGCTGATTGGCCAGATTTGACCTCTACA TGTCCCCGAGACTCTGCTGACCCCGTATTTCTATCAGTTACTCATGGGGA AACCCGATTACGCCAGAGGCTATTCGGGAGTAGCAAGGGCATTACATAAT GTCCGGGGGAGTAGCATATGTACACATAATCAAACAACGCTTTACATTAT AATTACAAAAATGTTGAATCAAGCAAAAAGATTACCTCAGAAATGGACCT TATTTTCTCACAAAAGTATGTGTGTTTATTGTGCTTCGCGGATACATAAC GTTGCATGTGGCGAAATCATATGTGTCTTTTCTCCCAGCTATAGTCAAAA AGTTCCTCCAAGACTACTAGAATGTCGCCTGCTGCCTAAATTACGCATGA TCTGACAGAATGGTAAAGGAATTCATGGTAAAGCAACTTTGTAATAGGTC AGCACCCAGACGAAAGTGACGCTGCATTCGTACCGTATGGCCTCTGGACG AGTAACCTACTAGGGGGAATGACCCGAGTAAAAGGGGAATCACCTTGACA AGGGGGAAATTGTGTGACGTCATTTTACAACCTTTGTCAAGAGATAGTTA AATAGCAAGCTAATAGATCGAGACATTCACTCCATGTCCATTCGCCAGTT TCTTACATTGATATTGATACGCAGTGGAACTTTGCATAAATATGACGTAA CGGGTTTCCTTGTGCAATAGGAATTTCCATGGCAACCATTCACCATGATA CCTCCTCCATGTTTTGGAACTCCAAAATTAAACTGATGCGAGCGTGCGAA TAATAAAAAGTTTGCCCCCTAAAAAATTGCCCTCAGGATGAAATCTGAGG AATCAGGGAGGTTGAACAAATGACTAAGCACAGAGTAAGGTATACCGAAA ACAGTAACAGTACATGTTTCGCGTTTCTCGTGTAAAATGGGCTCTGCTTC ATGACAAAATCCACTAGTCAGGAATGCAAATGCTAACACGTTTTTAATGA TCAGATATTTTGCATAGTACAAAAAATGATTACATACACATGATCTTATT AACCACATATAACCAAACACTCATATATATACAAGTATTGACCGATATAT ACATATAAAGTCACTGCTACAGTTAGACTGAATTGCGAATTCTAACACCA AAGCAATATATTGTAGATTCTAAATAAATTGCTCAACATGTTGTAAAAAT ATGTATTTTCATTAATTGTACTGGTAAATTGAAATACAGCCCATATAGCT TCTTGATACTTCTGTTATTTCCAACATAAAAAAATTGACAAGATACAATT GGATTATCAATCGCTGAATAATATAATCAACTATGTACAATCACTAAACA CACTTAATTAAATACTTACTATACGAATATAACACTGTATCATGTCAACA GGACATGTGAAAAATGGGAATTCAGCTTTTTTTCATGAATAAAATGTTAT TTCAGAAATGTCTCATCTGAAATAGGTTGATATGCACACAAAGGAAAAGG ATTTTATAAGATACCTCACAGTGACATGCACCGTAGGTGGATGTCAAAGC TCAAAGCCCCTGCTAATTCTTCATCTAACTGTTACATGTCCTTGACATTT ACCCACGATGCGTCTCACTGCACAGGCGCACTTTAAACAGTGAACGTTAT ATTCATTACACATTTCCATCAGCTATGGGACTACACGAAAAACGTGTGTA ACACAGCCAATACAGGACCTGAAACAAGACAGATGCCCCTGACCCCCCAA GTACTGCCCCCAGGGCAGCGTCATCGTACCACGACTCAGTCTCCTTTACC AAATGCCACACTGATACCATCACTATGTTAGTTGCTAACATCATCGTACC ACGACTCAGTCTCCTTTACCAAATGCCACACTGATACCATCACTATGTTA GTTGCTAACATCAGTGCACTGTTAACAAGAGTTCTACGACCTCATACCTT CGCGAAATGATTTTGACCTTTATGACTGACGTATTAGGAGTGTTTTTCAT CAATCAAAAATCATACCAGTTGATCCTCCTCACCCAAATAACATAAGTTG TCCAAACCTCCTTGTTATGATTATGAGCTTAACAAAGAAGGTTATGCTAA CATTTTTCATCAATAATGCAAATAAGCTCCTTATTAGCATAATTTGATTC AATGGTGTTCACATTCACACAACTTCTAAATGCAACAAGTATGAAATTGC CGTTATTTACTAGTATGGAATGATAGTAGTTTCTCATGAATTATGCAAAT TAGGCCTACATTTGCATAATTTCTATCTATTGACATTCCTCTCTTCCTCA GTTACAAATGTCACATATTTGAATAGTCATATCATGGAACACAGCAGGTT TTTAAAATTGCCTCATTAATTATAATCTGATTTGCATAATTATCATCCAA TCATACAAAGCATCACATAAGCTATCTACATACCAAAAATCATGACCATC CATCAAGCCCATCTCGAGTTATATTATTTTCTCATTAATTATGTAAATGA GGTTCTCATTTGCATAGCTGATATCTATTAATATTTCTCTCTTCCTCAGT TACATATGTCACATGTTTGCGAGTCCTATCATGGAAATTGATGAATGTAT AAACTTTCCTCATTAATTATGCAAATTAGTTACTGATTTGCATAATAAGT ATCCAATCATGTACATCATCGCTCAAGCTATGTACATGCAAAAAATCATG ACCTTCCATCAAGCCCTTCTTGAGTTATTCCCTTTCAAAGTCTGAAGCAA AACCTACCCCTGCAGTTCCAAAAAAGTTGCTAGGGGGCCCAAACCTATAC CACTTACTCTCTGCCCAACGAGCTATCTACCACTCAAAAATCAGTTCCAT AGCATGTCCACAACACGAGATATCATAACAGGAAGTTCCGCTGCAGTACC GTAACAAGCCGATAGGGGGCCCAAAATCTAATCATTTTCAGGTTTCATCG AGACCTACCAACATACCAAATACCAAGACAATCCTTCCAAGAATTCTCGA CTTATCGTGTTCACTAACAGACACACAGACATGCTCGGTATTCCCATGCT GTGGCACTGCATTAATGACTGTTCTTACTCATATAAGGCCGTGTATATCC AACTTTGGTCAAAATTTGTATGTTTCAGTCTTTTAATTGGTGTAAGGAGA TATCTTTGTGGTTTGGTTTCACATGCTCCGAGTGGACTCTTCCAGGCTGG GAGTAGGTCAAAGTTGACGATTGTTTTCGTCTGTCAGCTGTTACGAGAGA ACGAGCTGGTCAACTGTCTATTTTCTTTGCATGATTCTAAAGTAGACAGA TGTGGCTTTCTGGTGCATAAGAATTTTGGGGGCTTGCAATTAAGGTGAAT CCTTTTCTGAGCCCTTGTTTTAGTGCTTTAAAGCATTACTGCCTATATGG GCAAGTCTATCTCTTGTATCTGCCCTACAGCTGGCTGATAGCCAATTTGT CCCTGGCAGNTTATGCAAAACACTTTGCCCAAAATCTAATCATCTTGAGA TTTGACACATACACACCGACACACCAACTACGACAACAAACCATCCAGGC GTTCTCGACTTATTCTGTTCACTAACAGACACACAGACAAGCACCGTCGC ATAACCTTCTCGACGAAACCATTCGTCGCGAAGGTAACAATGGGCTGTAC TGGGTACAGCGTCCTGGACCCAAACGTGACCCAGGTAAACAC

Coding sequence (CDS) from alignment at Sc0000086:11804..18145+

>Blg00303.1 ID=Blg00303.1|Name=Blg00303.1|organism=Branchiostoma lanceolatum|type=CDS|length=480bp|location=Sequence derived from alignment at Sc0000086:11804..18145+ (Branchiostoma lanceolatum)
ATGACCGTCCAATCCGATCTTCCATCAGATGGACTTAACGAAATGACAGT
CTGGTCGTCTGCCGACAGACAGAACTATTGTGAGATGTACCAGGGTGAAA
CAAAATGCCACGGCGACCGGTTCAGCAATGGGGCTGAGATGTGGGAGACC
TGGTTTCCTGAATTGGACGGAGGGCACACGAGGCACGGGAGGATCGTGTT
GCTACTGAGAAACGTCTCCCTCAGTGATACAGGCCGGTACGAGGGGGAGA
TAAAGACGACCGACGACATTAACAACGTCAACACCATGCTGGTTGTGAAA
GAGGATTCTGAGAGACCGAGGGACGAAGACACAGCAAAGCAAGGTTGGAC
CACTATGTGGTGGCAGTGGTTTGGAGTATACGGTGCAGGGGTCCTGTCAG
GCGTGATTTTCGCTTTCATCGGCGTGAAGGTTGCACGCCACCGCAAAAAT
AGCCAGAAGCCATCGTCCGTACCTGTCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00303.1Blg00303.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00303.1-exon-Sc0000086-1570713199:11804..12353Blg00303.1-exon-Sc0000086-1570713199:11804..12353Branchiostoma lanceolatumexon
Blg00303.1-exon-Sc0000086-1570713199:12700..12741Blg00303.1-exon-Sc0000086-1570713199:12700..12741Branchiostoma lanceolatumexon
Blg00303.1-exon-Sc0000086-1570713199:12945..13059Blg00303.1-exon-Sc0000086-1570713199:12945..13059Branchiostoma lanceolatumexon
Blg00303.1-exon-Sc0000086-1570713199:13708..16241Blg00303.1-exon-Sc0000086-1570713199:13708..16241Branchiostoma lanceolatumexon
Blg00303.1-exon-Sc0000086-1570713199:16313..16373Blg00303.1-exon-Sc0000086-1570713199:16313..16373Branchiostoma lanceolatumexon
Blg00303.1-exon-Sc0000086-1570713199:18087..18145Blg00303.1-exon-Sc0000086-1570713199:18087..18145Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:11804..18145 +
Properties
Property NameValue
GeneIDBlg00303