Blg00287.2 (mRNA) - B. lanceolatum

Overview
NameBlg00287.2
Unique NameBlg00287.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:523618..529445+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00287.2 ID=Blg00287.2|Name=Blg00287.2|organism=Branchiostoma lanceolatum|type=mRNA|length=5828bp|location=Sequence derived from alignment at Sc0000086:523618..529445+ (Branchiostoma lanceolatum)
ATTGTCATATTGCCTTATGAATCACAGACGTTTCATGTTCAACGGCGGCG TGGGTCCATGTGGAGACGACGCCCTCCCCTGTGCCCGCCGTGCCGGGAGG GACGGTAACTCTCCCCTGTGCCTACACCGCGAGTCACCCCGACTCCGGCG GCGTCACCATCACCTGGTGGCGGGAACCCACCGTGCCGTCTGACACACGA CAGATCGTGTACGAGGCCCGGCGTCCCGGGGACCCAGGCGGCCGGGGGTA CGACCAGTGGGACGGGCGCACGTCTATGGCCGGCCAGGCGTCGTTACGGA TAGAGAGAGTCCGTACGGAGGACGCCGGGACGTACGAATGTGAGATTAGG AACTTCCAGCACGGAGCTGGCCGTGGCTACGTCACCCTTAACGTTATCGG TACGTTCAGCCTGTACGTTCAGTTAGTAACTGCCATATTCTGTTCAAACC ATTTTAAAGGGGTGAAACCTTACAGATGTGCACGGTCAGCCCAACTTAGG GTACTTAATGTTACATCTCTATTGTATTGTCCTGGACGTCCAAATATCGT ATATCAATAGCCCGGACCACGACTTGTATATCAACCCCACTATCATTTTC GTTTCCTTTTCCGTTTGGTTGGTTGGTTGTTGGCTGTCATTACAATGTAT TGTGATAATGTACATCTAATTCCTTTTCTCAGTACCAAGAGTTGACATGG TATAGTATTACATATGCCGTGTTTGTTAAAATCACGAATCGTGGATCATG GATATGTTCTGTTTTTCAGTTCCCGCCAACCCACCGCGTATCCATGGCAA CACGCCGTCACCTGCCGGCTCCACCCTCACCCTCACCTGCACGTCTACAG GTGGGCACCCTGCACCTGGAATCACCTGGACAAAGGCCGGACAACCCGTA GGACAAACACCTGTGTCCACTACCGACTCACAGGTGTCATCCACGCTCAA CCTGCGACTGTCCAAAGAGGACAACCAGGCCCGGGTGACGTGTACGGCGA CACAGGATGGCAGACCACCTCTAGCTCACTCCGTTGTCTTGAACGTCTCC TGTAAGTTAGTTTGCCATTACGCCGTAACGTTACATTATCAGATGACATT CTTTTTATATTTAGCAAAAGTCACTGAATTTTCGACAGGTATTGCGGCCG TCTACAGGAATATCAACCCACTCAATTTTGGCACGTGATCTCGTCCTGTG TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTGTTTGTG TGTGTTTCTGTATGTATTTCATACAAAAGTGATCTCGTCCCGTGTGTGCG TGTGTGCGTGTGTGTGTGTGCATGTGTGTCTGTGTGTATGTATTTGTGTG TCCGTGTGTCTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTG TTTTATATTAAAAGAAAAGATGTTAATTGCTGTCTGTGCCAAGTAAGTTT GATTTTTTTTCAGATCCACCAGAAGGAAATATAATGATAACTCCTTCTTG GGTGACGGTCGGCCAGGCTGTATATCTAGACTGCCAGGTGGACAGCAACC CTCCGCTGTCGGGCGGTGTGCGGTGGGGCCGGGTGGGCAGGCCTCTCCCA GCCTACGATGAAGTGAACGAGCACGGTACGTACTACATCCCGCAGGCCCG GGCAGAGCACGGCGGATGGTACATGTGCAGCACAAAGGACGGAATCATCT TGGCATCAAAACAACTCGTCATCCACGGTTAGTCCATAATTTGATGACTC AGTGGATTAACATACGTATCTATTCTTTAACATATAAGGATACATTTGAC AACGTATGCTATGTTTTCAATGCTATGCTATCAATCAATAGACGGCTCCA AAGGTCTGATACAATATCCTCTTTAATGCCATTTGGCCTTCTTGTATCAG AATGCATGTACTGCAGTGACAGTGTGCATTAGAGCCATATAGTTCGAAAT CATAGCGTGTTTTATAATAATGCCATAGGTCCATTTGCTACGCCGCCGCC GCCGACTACGTCACCGACATCCACTGCCAGAAACGGCGATATCGTCATCA GGACCCCAACTCACGTCAGAACCACACGCACGGGCGAGAGTGTGTCCCCA GGGGCTTGGACAACGGTTAACCGGGAAGAGCCAAGCATGGGTACGCTTTG ACACTGATCATCAGTATTGGTAGTTTGGAACGTTATCTCAAGCATTTTTT GACAATAAAGGTCTTTGATCTGAACATAACGGTTACACAGTTTTAAAAAA TACTGCTTGTTTCGACAAAATGTATCGATATTCCTAATCTCAACTTTGTA ACATCTTTTATTCGCAACATAGCGTGAATTGAAATTAAAACAACGTGACA ATGATTCTTATTCGAAAGATGACACCGTAGTTGCCGACCGTGACCCAGAC GCCAGTCTGAAGCCGCTGAAGATCGCGACCATCACGTTAGCGTCTCTCGG CGGAGTCGCGCTGTGTCTGGTTCTGATGGTCCGGCTCAGAGACAGGTGCA AGCGGAAGGCGCCCAGACCCGTGCCGCGTGATAAGGAGACACGGATCGTG AACCGTGCCGGCCCCAGTCTACAGCTAACGCCAGACCAAGGTACGCAAGA GGGTAACAATGAAGAACATCCGATGATGAGGTCTGACTCCGGCGTTTATG ATGAGCAGGACCAAGAGCTTGGTAAGAGGTTCACCAAAAGGGCAGTGTTT TCGATAGCGTTTGTGTGTAACAGTGTTTGTTTGTAACGGTGGTTGTGGCT GAACAATATAAAACAAGAGGCTCTTAACATTTTTTCCATGTTGGATCAAA ATCTAACATGGCGACGCCCATGGATGCCGACGAAAACAAAACAGGAATGA TCTTTGCTGCATTTGATACTTGGCAATTTTTATTAGTTCCGCTAGGTTTC GCCGTGTCGTCCAGGGCGTGTCCGTGGCTGACAGAAGACCACCCGCTCGT CCAACAGTTGCAAGGTGTACTGATGGACCCAGAGCGTCTAGAGCTCGGAA GAGTGCTGGACGAGGGTAGGAATTTTTATTTGAGGTTTATGGTGTCGTCT TTTACTGCTGTGTACGTAGAAACAAGGTGCATTTCTATATGGGGTCCAAC GTATCATGATTTGGAACATTTGGGGAAAGTTTTTAAATGATGTTCAGAAA GGCTGAAATTCGTCTGTTGCACTCGCTAACTTTATTGTCTTGCCTTACAG GGAACTTTGGTCTCGTCCGTAAAGCAGGCCTGAGGTCGGAAGACGGGAGG ATGTCAACTGTCGCTGTCAAGACACTTCAAGGTGACAATATGTGACTAAA ACGTCTAAGTAGAGCACTTCCATACATTACATATTTTACTTACAACTAGT CAACGTTGAAGATGTCAAACGTTCACATTGTGTTGAATTTACGGTAGTTG ATGGGCTACGTCATATTTTCCTAACGGTATTTCAAAAATACAACCATCTC TTTTACGCAGCAACCTCCCACGCCAGAGCTCCAGAAGTGGCGTGTTTCCT ACAGGAGGGTATCACCATGAAGGGGTTCGACCATAAGAACGTGCTGGGGC TGATCGGCGTGTGTGTTCCCCAGGACGGCTACCCTGTGGTCGTCCTCCCC TTCATGCAACACGGCAGCCTGCTGTCGTATCTAAGGAACGACGAAAATGT AAGGGACTAGAACGTTGCAGTTGGAGCTCTTTCAGGATTGAGGTACCACA GCGATAGAAAGCTGTAGCAACCTACAGACCCACATCTGTGTCGTTATTTA GTCCAACGTTTTTAGTTTGACCTCCATCCCACCGCTGCCACCAGTGTAAA CGCTTGGTATACGTCTTATTCATGTCACGCAAGAAACTCGTATCCTTCAT CAAAGCCTTTTACTATTTCAACGACCCACAGTCCTCCAAAGGAAGATCGT ACCACCGCACTGATAGGACTTTCACAATTGAGAACATCGCACTCGTAGCA GAAGGCTATTACAGGGGATTTTCTGTAACATGTTTTCCTTTCATGCATCA GGACGTGTCTATGAAACAGGCCACCACGTTCTGTCTGGACGTTGCGAGAG GGATGGAGTACCTGTCTAAGCTGAAGTTTGTACACCGAGACCTGGCCGCT CGCAACTGCATGTAAGTACCGATTAAACGTTATGAGTTATGGTCTTGTTG ATGCTTGGTCACAATCGTCATACTATACTTTTTTAGTCGTAGAGTTTTCA GCGAAGCTATGAATGGACGGAATCTCCGACAACCTTTTCCATTAGAAGAC AGCTGGAGTGTGCATGTGCGAGGTCTATTACTGTTCTGAGAATGTACTCG ATTTGTCCTAAACTAATCGTACGACGAATGTGACGGGCCCTATAACGACG AATGAACCTCCGACGTGCCGCTGCTTTTCTGACGAGTAATGATCGTACAA AGCATGACACGTTGCTTACTTTTATGTGATACAGGGTTAACGTTAATCTG GATGTGAAGGTCGGAGACTTCGGCCTGTCCCGCCACCTTCACACGAAGCA GTACTACCGCCTGGGGGACCAGGACGACCGGGAGCTGCCCATTAGGTGGA TGGCACCGGAGAGCTTCCGCCGCCGGACCTACACCACCAAGACAGACGTG GTAAGTAAAGTATCGTAAATGTAAATTTAGCTGTTCTCAGGATGAGACGA CGCGTCAGATTCTTTTTATGGCTGGGAGTGCCATGCGACTCCGCCACCAT TGCTCATGAGGCGTCTACAAGACAACGCCATTCTTACGAGCAAAGATGGC CAGAATGACACATTCATTGTTTTCTCCAGGGAATATTACTTTGGAGACCT GAAACCATGGAAATGGTCCATTGGATATTTTCATCTGCTGGTATACATTT TTGATTACATTTGTAACTTTCAGTTTGTGTTCTGTTCAGTGGTCGTTCGG TGTGCTGATGTGGGAGGTGATGACCCGGGGTCTGCAGCCGTACCAGCAGC TCAACAACACTGAGGTGGCGGGCTTCGTCTGCTCAGGGCACCGCCTGGAC TGTCCCGAGTACTGCACAGAGAGGCTGTGAGAACACTCTGCTTTTTGAAG CCTTGAAAGCCCGTTAGTTAACACAAGTTGTCGGCTTTTCGTGTGATTTT TACCTCCGTGAACGGATGTATCGTTAATGGTGTGTGTGTCTGTTTGCTTG TTTGACTATTTGTTTGCATACTCATTTTTGTCTAATAGATGTACTGACGA CAGCTCGAGCTAGGAAACCAATGTGATTACTAACGATTGAAAGAATGGTG AATTTTAGATTGCAAAATGTAGCCAAAACTCTTTGTGAGAAACCCTAAAG CGGCGTTTAAGTTGTAGTGGGACTTCTCTAGCCTCTACCAGGCTCCGTGG ATCGCTGGAAAAATTGTAGAACTTGGCCAAAAAGAGTCGGTCGGCCAAAA GGGTCCAATAGGCAAATCGTAAATTTCTACTATTTTTCCAGCGATCCGGA GAGCCTGGTAGAGGCTAGGACTTCCAAATGAATCTAGTTATCAGGCCGAT AGTTCTTTGATCCTCTACCCCTATCTAATCAGTACGATTTTGAACCCGGT ATTGGACATAAATCCCTCGTATTTCCCACACCATTGTTTCCCCAGGCATG GTTTGATGTTACACTGCTGGGCGGCTGACCCTGACGACCGACCGGCCTTC CCGGAGATCACGGCGGAGCTCGAGCGAACTCTGCTGGCCTCCACCGGGCA CCAGTACGCCTCGCTACAGCGGTGTTACGTTAACTTTAACGATATAGTCT AGAGATACACAATTCCATCAAGTGTGTAATGTTATACTTCAACTAGAATG AACCCTGCGGGCATCTACATCACACCCA

Coding sequence (CDS) from alignment at Sc0000086:523618..529445+

>Blg00287.2 ID=Blg00287.2|Name=Blg00287.2|organism=Branchiostoma lanceolatum|type=CDS|length=2103bp|location=Sequence derived from alignment at Sc0000086:523618..529445+ (Branchiostoma lanceolatum)
ATGGCCGGCCAGGCGTCGTTACGGATAGAGAGAGTCCGTACGGAGGACGC
CGGGACGTACGAATGTGAGATTAGGAACTTCCAGCACGGAGCTGGCCGTG
GCTACGTCACCCTTAACGTTATCGTTCCCGCCAACCCACCGCGTATCCAT
GGCAACACGCCGTCACCTGCCGGCTCCACCCTCACCCTCACCTGCACGTC
TACAGGTGGGCACCCTGCACCTGGAATCACCTGGACAAAGGCCGGACAAC
CCGTAGGACAAACACCTGTGTCCACTACCGACTCACAGGTGTCATCCACG
CTCAACCTGCGACTGTCCAAAGAGGACAACCAGGCCCGGGTGACGTGTAC
GGCGACACAGGATGGCAGACCACCTCTAGCTCACTCCGTTGTCTTGAACG
TCTCCTATCCACCAGAAGGAAATATAATGATAACTCCTTCTTGGGTGACG
GTCGGCCAGGCTGTATATCTAGACTGCCAGGTGGACAGCAACCCTCCGCT
GTCGGGCGGTGTGCGGTGGGGCCGGGTGGGCAGGCCTCTCCCAGCCTACG
ATGAAGTGAACGAGCACGGTACGTACTACATCCCGCAGGCCCGGGCAGAG
CACGGCGGATGGTACATGTGCAGCACAAAGGACGGAATCATCTTGGCATC
AAAACAACTCGTCATCCACGGTCCATTTGCTACGCCGCCGCCGCCGACTA
CGTCACCGACATCCACTGCCAGAAACGGCGATATCGTCATCAGGACCCCA
ACTCACGTCAGAACCACACGCACGGGCGAGAGTGTGTCCCCAGGGGCTTG
GACAACGGTTAACCGGGAAGAGCCAAGCATGGATGACACCGTAGTTGCCG
ACCGTGACCCAGACGCCAGTCTGAAGCCGCTGAAGATCGCGACCATCACG
TTAGCGTCTCTCGGCGGAGTCGCGCTGTGTCTGGTTCTGATGGTCCGGCT
CAGAGACAGGTGCAAGCGGAAGGCGCCCAGACCCGTGCCGCGTGATAAGG
AGACACGGATCGTGAACCGTGCCGGCCCCAGTCTACAGCTAACGCCAGAC
CAAGGTACGCAAGAGGGTAACAATGAAGAACATCCGATGATGAGGTCTGA
CTCCGGCGTTTATGATGAGCAGGACCAAGAGCTTGTTCCGCTAGGTTTCG
CCGTGTCGTCCAGGGCGTGTCCGTGGCTGACAGAAGACCACCCGCTCGTC
CAACAGTTGCAAGGTGTACTGATGGACCCAGAGCGTCTAGAGCTCGGAAG
AGTGCTGGACGAGGGGAACTTTGGTCTCGTCCGTAAAGCAGGCCTGAGGT
CGGAAGACGGGAGGATGTCAACTGTCGCTGTCAAGACACTTCAAGCAACC
TCCCACGCCAGAGCTCCAGAAGTGGCGTGTTTCCTACAGGAGGGTATCAC
CATGAAGGGGTTCGACCATAAGAACGTGCTGGGGCTGATCGGCGTGTGTG
TTCCCCAGGACGGCTACCCTGTGGTCGTCCTCCCCTTCATGCAACACGGC
AGCCTGCTGTCGTATCTAAGGAACGACGAAAATGACGTGTCTATGAAACA
GGCCACCACGTTCTGTCTGGACGTTGCGAGAGGGATGGAGTACCTGTCTA
AGCTGAAGTTTGTACACCGAGACCTGGCCGCTCGCAACTGCATGGTTAAC
GTTAATCTGGATGTGAAGGTCGGAGACTTCGGCCTGTCCCGCCACCTTCA
CACGAAGCAGTACTACCGCCTGGGGGACCAGGACGACCGGGAGCTGCCCA
TTAGGTGGATGGCACCGGAGAGCTTCCGCCGCCGGACCTACACCACCAAG
ACAGACGTGTGGTCGTTCGGTGTGCTGATGTGGGAGGTGATGACCCGGGG
TCTGCAGCCGTACCAGCAGCTCAACAACACTGAGGTGGCGGGCTTCGTCT
GCTCAGGGCACCGCCTGGACTGTCCCGAGTACTGCACAGAGAGGCTGCAT
GGTTTGATGTTACACTGCTGGGCGGCTGACCCTGACGACCGACCGGCCTT
CCCGGAGATCACGGCGGAGCTCGAGCGAACTCTGCTGGCCTCCACCGGGC
ACCAGTACGCCTCGCTACAGCGGTGTTACGTTAACTTTAACGATATAGTC
TAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00287.2Blg00287.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00287.2-exon-Sc0000086-1570713199:523618..524016Blg00287.2-exon-Sc0000086-1570713199:523618..524016Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:524387..524668Blg00287.2-exon-Sc0000086-1570713199:524387..524668Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:525081..525344Blg00287.2-exon-Sc0000086-1570713199:525081..525344Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:525596..525757Blg00287.2-exon-Sc0000086-1570713199:525596..525757Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:525986..526288Blg00287.2-exon-Sc0000086-1570713199:525986..526288Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:526504..526632Blg00287.2-exon-Sc0000086-1570713199:526504..526632Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:526818..526898Blg00287.2-exon-Sc0000086-1570713199:526818..526898Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:527078..527265Blg00287.2-exon-Sc0000086-1570713199:527078..527265Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:527619..527728Blg00287.2-exon-Sc0000086-1570713199:527619..527728Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:528052..528217Blg00287.2-exon-Sc0000086-1570713199:528052..528217Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:528507..528643Blg00287.2-exon-Sc0000086-1570713199:528507..528643Branchiostoma lanceolatumexon
Blg00287.2-exon-Sc0000086-1570713199:529213..529445Blg00287.2-exon-Sc0000086-1570713199:529213..529445Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:523618..529445 +
Properties
Property NameValue
GeneIDBlg00287