Blg00287.1 (mRNA) - B. lanceolatum

Overview
NameBlg00287.1
Unique NameBlg00287.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:521911..529445+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00287.1 ID=Blg00287.1|Name=Blg00287.1|organism=Branchiostoma lanceolatum|type=mRNA|length=7535bp|location=Sequence derived from alignment at Sc0000086:521911..529445+ (Branchiostoma lanceolatum)
CAGAAAGCGAAAGCTGTTTATGAGGAAGTCGGTACATGCAGTTGTTTGAA AACAAGACCCGGTTGTAGAGTTCTGTCAGTCTGATGTAGAGTTCGCACAT TTCTACCGGCCTGACCATGCCTGGAGAGGTCCTACTGCCGTGTGTTGTTG CCGTCATGCTAATCTTCGTAACAGGTGAGTGCAAACGCAGTGTTTTGAAA AGTGAGCCGAGTGTCGCGCTACATGTGTACCGAGTAACGTTACCTGTACC TGCTGCGGAACCTTATTGAAAACTTCCTGCTGTTCTGTGGTTTCTTTGTT TACTTGAGGGCGGCGGGTAACCTTGCACACCACATTTTGCGGTCATTTCA CGGTGATTTGGTCCGCTGCTTAGATACGGCCTTGTAGTGTGAAGACAAAC GTATCGTGAATTACAGTAGTTTCTACACCGCTAAACAGTCACTTATAGTA TCAACATGGCAGTGCTACTGTGTGGTAACGTTATCGGTAACATTGAATAT TTGTGTAGGGCGTCGTGTTATGATATGCTGCAACAACAGTTCTGTGGAAG AGCAACACACACAAAGTTACAGAGGTCCGTGATGTTGTCTGTTGCCTCCG TGAGTTTCACCGGAGGTATTGTTTTTGTTGTGCCTGTTTGTGTGTGTGTT TCCATGTACTTTGGCCAGAAGGTCGTAATGGATTGTAATGATATTTGGTA TGTGGGTAGGTGTTGCGAAGGACAAGGTCGATTTTGGTGACATACGTGTA TGGGCACGTACATTGGGTTCAAGTTTCAAGTATACAAAGATTATGTACCT ATAGGGCAGACAAATATACAGCTCTATATTCGTCACGCATATCATTTCCC ATTTGCACACATTGGCGTCATTCTGTGCGATATGGAAAATATGACACATT TTTGCTTTCGACATGTCTTGGAAGATCTAGATTTTGAACAGACTGGGATT GAAACTGTCCCCTTGCAACAAAGGATTAAAATAGTTGACTTCTCAGAATT TTTCACAAAAATTACTCCCCCAACAAAGCCTATTTTCGACTTGTACGCGC ATAGTGAGTCACTGTTATCTATTTCGAATTCGTTACAATCACAGTTGTGT GGTAGTATATATAGTTGTAGCTATGTAAACATTGTTACCCTAGTACTTGT AATTTTGCAATGAGGTACAATAAATAAAGAGCTTGGTCTCTCTATCGAGA GATAAATCGACAAATAAATACAACAGAAAAACATGTATATATATATATAT ATACTAATATATATATATATATATATATATATATATAAGGAGCAATGGCA GATGTGGTAATGCTTTTGCACTTCTACTTTCTCTTTCAAAATCGTGACCA GATCAATTGGTGACGTCAAACCCCGCATCAGTATCGTAGGTATTGAGAAA CTAGCTACGTAGTTTAATCTTCATCATGTGTACCACATGTATGCTTTATA TTTCACTTTATGTTTGTGCATCGGTATCAATTGTTTTCAACTGGTAATAA GCCTACGGGCAGGAATTTGCAATAAACCTTTTATAACAAAACATAATTAT AACCTTCTTGGCGAAGGTAAACAGATGTATGGGTTAAAGTAACTGAATTC AAACAAAACTGATTACGAAAGTGATAGCAACTACAACATTGCTACAAACG TATATAGGACACAATGAAACGCGCCAGAAAACCTGATTGTTAGTCATATC TTTGCTTATTGTCATATTGCCTTATGAATCACAGACGTTTCATGTTCAAC GGCGGCGTGGGTCCATGTGGAGACGACGCCCTCCCCTGTGCCCGCCGTGC CGGGAGGGACGGTAACTCTCCCCTGTGCCTACACCGCGAGTCACCCCGAC TCCGGCGGCGTCACCATCACCTGGTGGCGGGAACCCACCGTGCCGTCTGA CACACGACAGATCGTGTACGAGGCCCGGCGTCCCGGGGACCCAGGCGGCC GGGGGTACGACCAGTGGGACGGGCGCACGTCTATGGCCGGCCAGGCGTCG TTACGGATAGAGAGAGTCCGTACGGAGGACGCCGGGACGTACGAATGTGA GATTAGGAACTTCCAGCACGGAGCTGGCCGTGGCTACGTCACCCTTAACG TTATCGGTACGTTCAGCCTGTACGTTCAGTTAGTAACTGCCATATTCTGT TCAAACCATTTTAAAGGGGTGAAACCTTACAGATGTGCACGGTCAGCCCA ACTTAGGGTACTTAATGTTACATCTCTATTGTATTGTCCTGGACGTCCAA ATATCGTATATCAATAGCCCGGACCACGACTTGTATATCAACCCCACTAT CATTTTCGTTTCCTTTTCCGTTTGGTTGGTTGGTTGTTGGCTGTCATTAC AATGTATTGTGATAATGTACATCTAATTCCTTTTCTCAGTACCAAGAGTT GACATGGTATAGTATTACATATGCCGTGTTTGTTAAAATCACGAATCGTG GATCATGGATATGTTCTGTTTTTCAGTTCCCGCCAACCCACCGCGTATCC ATGGCAACACGCCGTCACCTGCCGGCTCCACCCTCACCCTCACCTGCACG TCTACAGGTGGGCACCCTGCACCTGGAATCACCTGGACAAAGGCCGGACA ACCCGTAGGACAAACACCTGTGTCCACTACCGACTCACAGGTGTCATCCA CGCTCAACCTGCGACTGTCCAAAGAGGACAACCAGGCCCGGGTGACGTGT ACGGCGACACAGGATGGCAGACCACCTCTAGCTCACTCCGTTGTCTTGAA CGTCTCCTGTAAGTTAGTTTGCCATTACGCCGTAACGTTACATTATCAGA TGACATTCTTTTTATATTTAGCAAAAGTCACTGAATTTTCGACAGGTATT GCGGCCGTCTACAGGAATATCAACCCACTCAATTTTGGCACGTGATCTCG TCCTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTT GTTTGTGTGTGTTTCTGTATGTATTTCATACAAAAGTGATCTCGTCCCGT GTGTGCGTGTGTGCGTGTGTGTGTGTGCATGTGTGTCTGTGTGTATGTAT TTGTGTGTCCGTGTGTCTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGT TTCTGTGTTTTATATTAAAAGAAAAGATGTTAATTGCTGTCTGTGCCAAG TAAGTTTGATTTTTTTTCAGATCCACCAGAAGGAAATATAATGATAACTC CTTCTTGGGTGACGGTCGGCCAGGCTGTATATCTAGACTGCCAGGTGGAC AGCAACCCTCCGCTGTCGGGCGGTGTGCGGTGGGGCCGGGTGGGCAGGCC TCTCCCAGCCTACGATGAAGTGAACGAGCACGGTACGTACTACATCCCGC AGGCCCGGGCAGAGCACGGCGGATGGTACATGTGCAGCACAAAGGACGGA ATCATCTTGGCATCAAAACAACTCGTCATCCACGGTTAGTCCATAATTTG ATGACTCAGTGGATTAACATACGTATCTATTCTTTAACATATAAGGATAC ATTTGACAACGTATGCTATGTTTTCAATGCTATGCTATCAATCAATAGAC GGCTCCAAAGGTCTGATACAATATCCTCTTTAATGCCATTTGGCCTTCTT GTATCAGAATGCATGTACTGCAGTGACAGTGTGCATTAGAGCCATATAGT TCGAAATCATAGCGTGTTTTATAATAATGCCATAGGTCCATTTGCTACGC CGCCGCCGCCGACTACGTCACCGACATCCACTGCCAGAAACGGCGATATC GTCATCAGGACCCCAACTCACGTCAGAACCACACGCACGGGCGAGAGTGT GTCCCCAGGGGCTTGGACAACGGTTAACCGGGAAGAGCCAAGCATGGGTA CGCTTTGACACTGATCATCAGTATTGGTAGTTTGGAACGTTATCTCAAGC ATTTTTTGACAATAAAGGTCTTTGATCTGAACATAACGGTTACACAGTTT TAAAAAATACTGCTTGTTTCGACAAAATGTATCGATATTCCTAATCTCAA CTTTGTAACATCTTTTATTCGCAACATAGCGTGAATTGAAATTAAAACAA CGTGACAATGATTCTTATTCGAAAGATGACACCGTAGTTGCCGACCGTGA CCCAGACGCCAGTCTGAAGCCGCTGAAGATCGCGACCATCACGTTAGCGT CTCTCGGCGGAGTCGCGCTGTGTCTGGTTCTGATGGTCCGGCTCAGAGAC AGGTGCAAGCGGAAGGCGCCCAGACCCGTGCCGCGTGATAAGGAGACACG GATCGTGAACCGTGCCGGCCCCAGTCTACAGCTAACGCCAGACCAAGGTA CGCAAGAGGGTAACAATGAAGAACATCCGATGATGAGGTCTGACTCCGGC GTTTATGATGAGCAGGACCAAGAGCTTGGTAAGAGGTTCACCAAAAGGGC AGTGTTTTCGATAGCGTTTGTGTGTAACAGTGTTTGTTTGTAACGGTGGT TGTGGCTGAACAATATAAAACAAGAGGCTCTTAACATTTTTTCCATGTTG GATCAAAATCTAACATGGCGACGCCCATGGATGCCGACGAAAACAAAACA GGAATGATCTTTGCTGCATTTGATACTTGGCAATTTTTATTAGTTCCGCT AGGTTTCGCCGTGTCGTCCAGGGCGTGTCCGTGGCTGACAGAAGACCACC CGCTCGTCCAACAGTTGCAAGGTGTACTGATGGACCCAGAGCGTCTAGAG CTCGGAAGAGTGCTGGACGAGGGTAGGAATTTTTATTTGAGGTTTATGGT GTCGTCTTTTACTGCTGTGTACGTAGAAACAAGGTGCATTTCTATATGGG GTCCAACGTATCATGATTTGGAACATTTGGGGAAAGTTTTTAAATGATGT TCAGAAAGGCTGAAATTCGTCTGTTGCACTCGCTAACTTTATTGTCTTGC CTTACAGGGAACTTTGGTCTCGTCCGTAAAGCAGGCCTGAGGTCGGAAGA CGGGAGGATGTCAACTGTCGCTGTCAAGACACTTCAAGGTGACAATATGT GACTAAAACGTCTAAGTAGAGCACTTCCATACATTACATATTTTACTTAC AACTAGTCAACGTTGAAGATGTCAAACGTTCACATTGTGTTGAATTTACG GTAGTTGATGGGCTACGTCATATTTTCCTAACGGTATTTCAAAAATACAA CCATCTCTTTTACGCAGCAACCTCCCACGCCAGAGCTCCAGAAGTGGCGT GTTTCCTACAGGAGGGTATCACCATGAAGGGGTTCGACCATAAGAACGTG CTGGGGCTGATCGGCGTGTGTGTTCCCCAGGACGGCTACCCTGTGGTCGT CCTCCCCTTCATGCAACACGGCAGCCTGCTGTCGTATCTAAGGAACGACG AAAATGTAAGGGACTAGAACGTTGCAGTTGGAGCTCTTTCAGGATTGAGG TACCACAGCGATAGAAAGCTGTAGCAACCTACAGACCCACATCTGTGTCG TTATTTAGTCCAACGTTTTTAGTTTGACCTCCATCCCACCGCTGCCACCA GTGTAAACGCTTGGTATACGTCTTATTCATGTCACGCAAGAAACTCGTAT CCTTCATCAAAGCCTTTTACTATTTCAACGACCCACAGTCCTCCAAAGGA AGATCGTACCACCGCACTGATAGGACTTTCACAATTGAGAACATCGCACT CGTAGCAGAAGGCTATTACAGGGGATTTTCTGTAACATGTTTTCCTTTCA TGCATCAGGACGTGTCTATGAAACAGGCCACCACGTTCTGTCTGGACGTT GCGAGAGGGATGGAGTACCTGTCTAAGCTGAAGTTTGTACACCGAGACCT GGCCGCTCGCAACTGCATGTAAGTACCGATTAAACGTTATGAGTTATGGT CTTGTTGATGCTTGGTCACAATCGTCATACTATACTTTTTTAGTCGTAGA GTTTTCAGCGAAGCTATGAATGGACGGAATCTCCGACAACCTTTTCCATT AGAAGACAGCTGGAGTGTGCATGTGCGAGGTCTATTACTGTTCTGAGAAT GTACTCGATTTGTCCTAAACTAATCGTACGACGAATGTGACGGGCCCTAT AACGACGAATGAACCTCCGACGTGCCGCTGCTTTTCTGACGAGTAATGAT CGTACAAAGCATGACACGTTGCTTACTTTTATGTGATACAGGGTTAACGT TAATCTGGATGTGAAGGTCGGAGACTTCGGCCTGTCCCGCCACCTTCACA CGAAGCAGTACTACCGCCTGGGGGACCAGGACGACCGGGAGCTGCCCATT AGGTGGATGGCACCGGAGAGCTTCCGCCGCCGGACCTACACCACCAAGAC AGACGTGGTAAGTAAAGTATCGTAAATGTAAATTTAGCTGTTCTCAGGAT GAGACGACGCGTCAGATTCTTTTTATGGCTGGGAGTGCCATGCGACTCCG CCACCATTGCTCATGAGGCGTCTACAAGACAACGCCATTCTTACGAGCAA AGATGGCCAGAATGACACATTCATTGTTTTCTCCAGGGAATATTACTTTG GAGACCTGAAACCATGGAAATGGTCCATTGGATATTTTCATCTGCTGGTA TACATTTTTGATTACATTTGTAACTTTCAGTTTGTGTTCTGTTCAGTGGT CGTTCGGTGTGCTGATGTGGGAGGTGATGACCCGGGGTCTGCAGCCGTAC CAGCAGCTCAACAACACTGAGGTGGCGGGCTTCGTCTGCTCAGGGCACCG CCTGGACTGTCCCGAGTACTGCACAGAGAGGCTGTGAGAACACTCTGCTT TTTGAAGCCTTGAAAGCCCGTTAGTTAACACAAGTTGTCGGCTTTTCGTG TGATTTTTACCTCCGTGAACGGATGTATCGTTAATGGTGTGTGTGTCTGT TTGCTTGTTTGACTATTTGTTTGCATACTCATTTTTGTCTAATAGATGTA CTGACGACAGCTCGAGCTAGGAAACCAATGTGATTACTAACGATTGAAAG AATGGTGAATTTTAGATTGCAAAATGTAGCCAAAACTCTTTGTGAGAAAC CCTAAAGCGGCGTTTAAGTTGTAGTGGGACTTCTCTAGCCTCTACCAGGC TCCGTGGATCGCTGGAAAAATTGTAGAACTTGGCCAAAAAGAGTCGGTCG GCCAAAAGGGTCCAATAGGCAAATCGTAAATTTCTACTATTTTTCCAGCG ATCCGGAGAGCCTGGTAGAGGCTAGGACTTCCAAATGAATCTAGTTATCA GGCCGATAGTTCTTTGATCCTCTACCCCTATCTAATCAGTACGATTTTGA ACCCGGTATTGGACATAAATCCCTCGTATTTCCCACACCATTGTTTCCCC AGGCATGGTTTGATGTTACACTGCTGGGCGGCTGACCCTGACGACCGACC GGCCTTCCCGGAGATCACGGCGGAGCTCGAGCGAACTCTGCTGGCCTCCA CCGGGCACCAGTACGCCTCGCTACAGCGGTGTTACGTTAACTTTAACGAT ATAGTCTAGAGATACACAATTCCATCAAGTGTGTAATGTTATACTTCAAC TAGAATGAACCCTGCGGGCATCTACATCACACCCA

Coding sequence (CDS) from alignment at Sc0000086:521911..529445+

>Blg00287.1 ID=Blg00287.1|Name=Blg00287.1|organism=Branchiostoma lanceolatum|type=CDS|length=2037bp|location=Sequence derived from alignment at Sc0000086:521911..529445+ (Branchiostoma lanceolatum)
ATGCCTGGAGAGGTCCTACTGCCGTGTGTTGTTGCCGTCATGCTAATCTT
CGTAACAGTTCCCGCCAACCCACCGCGTATCCATGGCAACACGCCGTCAC
CTGCCGGCTCCACCCTCACCCTCACCTGCACGTCTACAGGTGGGCACCCT
GCACCTGGAATCACCTGGACAAAGGCCGGACAACCCGTAGGACAAACACC
TGTGTCCACTACCGACTCACAGGTGTCATCCACGCTCAACCTGCGACTGT
CCAAAGAGGACAACCAGGCCCGGGTGACGTGTACGGCGACACAGGATGGC
AGACCACCTCTAGCTCACTCCGTTGTCTTGAACGTCTCCTATCCACCAGA
AGGAAATATAATGATAACTCCTTCTTGGGTGACGGTCGGCCAGGCTGTAT
ATCTAGACTGCCAGGTGGACAGCAACCCTCCGCTGTCGGGCGGTGTGCGG
TGGGGCCGGGTGGGCAGGCCTCTCCCAGCCTACGATGAAGTGAACGAGCA
CGGTACGTACTACATCCCGCAGGCCCGGGCAGAGCACGGCGGATGGTACA
TGTGCAGCACAAAGGACGGAATCATCTTGGCATCAAAACAACTCGTCATC
CACGGTCCATTTGCTACGCCGCCGCCGCCGACTACGTCACCGACATCCAC
TGCCAGAAACGGCGATATCGTCATCAGGACCCCAACTCACGTCAGAACCA
CACGCACGGGCGAGAGTGTGTCCCCAGGGGCTTGGACAACGGTTAACCGG
GAAGAGCCAAGCATGGATGACACCGTAGTTGCCGACCGTGACCCAGACGC
CAGTCTGAAGCCGCTGAAGATCGCGACCATCACGTTAGCGTCTCTCGGCG
GAGTCGCGCTGTGTCTGGTTCTGATGGTCCGGCTCAGAGACAGGTGCAAG
CGGAAGGCGCCCAGACCCGTGCCGCGTGATAAGGAGACACGGATCGTGAA
CCGTGCCGGCCCCAGTCTACAGCTAACGCCAGACCAAGGTACGCAAGAGG
GTAACAATGAAGAACATCCGATGATGAGGTCTGACTCCGGCGTTTATGAT
GAGCAGGACCAAGAGCTTGTTCCGCTAGGTTTCGCCGTGTCGTCCAGGGC
GTGTCCGTGGCTGACAGAAGACCACCCGCTCGTCCAACAGTTGCAAGGTG
TACTGATGGACCCAGAGCGTCTAGAGCTCGGAAGAGTGCTGGACGAGGGG
AACTTTGGTCTCGTCCGTAAAGCAGGCCTGAGGTCGGAAGACGGGAGGAT
GTCAACTGTCGCTGTCAAGACACTTCAAGCAACCTCCCACGCCAGAGCTC
CAGAAGTGGCGTGTTTCCTACAGGAGGGTATCACCATGAAGGGGTTCGAC
CATAAGAACGTGCTGGGGCTGATCGGCGTGTGTGTTCCCCAGGACGGCTA
CCCTGTGGTCGTCCTCCCCTTCATGCAACACGGCAGCCTGCTGTCGTATC
TAAGGAACGACGAAAATGACGTGTCTATGAAACAGGCCACCACGTTCTGT
CTGGACGTTGCGAGAGGGATGGAGTACCTGTCTAAGCTGAAGTTTGTACA
CCGAGACCTGGCCGCTCGCAACTGCATGGTTAACGTTAATCTGGATGTGA
AGGTCGGAGACTTCGGCCTGTCCCGCCACCTTCACACGAAGCAGTACTAC
CGCCTGGGGGACCAGGACGACCGGGAGCTGCCCATTAGGTGGATGGCACC
GGAGAGCTTCCGCCGCCGGACCTACACCACCAAGACAGACGTGTGGTCGT
TCGGTGTGCTGATGTGGGAGGTGATGACCCGGGGTCTGCAGCCGTACCAG
CAGCTCAACAACACTGAGGTGGCGGGCTTCGTCTGCTCAGGGCACCGCCT
GGACTGTCCCGAGTACTGCACAGAGAGGCTGCATGGTTTGATGTTACACT
GCTGGGCGGCTGACCCTGACGACCGACCGGCCTTCCCGGAGATCACGGCG
GAGCTCGAGCGAACTCTGCTGGCCTCCACCGGGCACCAGTACGCCTCGCT
ACAGCGGTGTTACGTTAACTTTAACGATATAGTCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00287.1Blg00287.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00287.1-exon-Sc0000086-1570713199:521911..522084Blg00287.1-exon-Sc0000086-1570713199:521911..522084Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:524387..524668Blg00287.1-exon-Sc0000086-1570713199:524387..524668Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:525081..525344Blg00287.1-exon-Sc0000086-1570713199:525081..525344Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:525596..525757Blg00287.1-exon-Sc0000086-1570713199:525596..525757Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:525986..526288Blg00287.1-exon-Sc0000086-1570713199:525986..526288Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:526504..526632Blg00287.1-exon-Sc0000086-1570713199:526504..526632Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:526818..526898Blg00287.1-exon-Sc0000086-1570713199:526818..526898Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:527078..527265Blg00287.1-exon-Sc0000086-1570713199:527078..527265Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:527619..527728Blg00287.1-exon-Sc0000086-1570713199:527619..527728Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:528052..528217Blg00287.1-exon-Sc0000086-1570713199:528052..528217Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:528507..528643Blg00287.1-exon-Sc0000086-1570713199:528507..528643Branchiostoma lanceolatumexon
Blg00287.1-exon-Sc0000086-1570713199:529213..529445Blg00287.1-exon-Sc0000086-1570713199:529213..529445Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:521911..529445 +
Properties
Property NameValue
GeneIDBlg00287