Blg00279.0 (mRNA) - B. lanceolatum

Overview
NameBlg00279.0
Unique NameBlg00279.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:883002..887776+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00279.0 ID=Blg00279.0|Name=Blg00279.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4775bp|location=Sequence derived from alignment at Sc0000086:883002..887776+ (Branchiostoma lanceolatum)
ACGTGCAGGCCACCTGTACAGATAATCCGGCTGTTGACCTTGATGTCAGA AGTACCTGCACCTGCAACACTGGATATAAAGGGGATGGTCTCGTCAGTGG GTCTGGATGTTCAGGTATTACTTCATCACCACTTTTTACAAAGGATACAA TCGTCCTAATTGCTCTTTTCTTTCTAAAATTCATTTTGCCAAGTAATGAG AGCTGTTTTGATTTCTACCATGCAGACATCGATGCCTGCTTGGTCAATCC GTGTCATGTAAACGCCACCTGTACAGATAATCCCGCTCCTGCCCTTGATG CGACTTGTACCTGTAACACTGGATATACAGGAGATGGTCTCGACAGTGGA CCTGGATGCTCAGGTATCACTTTATCACAACTTTTACCATGAGAATCGTC CTAATTACTCTTCTACTCTTCTAAAATTCAGTGTTCAGTACTGAGTGTGA CTATGTTTCCTACCATACAGACATCGATGCCTGCTTGTCTAATCCATGCC ACGTGCAAGCCACCTGTACAGATAATCCTGCCCCTACCCTCAATGCCAAC TGCACCTGCAACATTGGATACAGAGGAGATGGTCTCGTCAGTGGGACTGG ATGTTTAGGTATTGTTTCCTCGCGGTGTAATCCTGAATTAACATAAAAAG GTGGCTGCCTGTCTGTGTTACCGTAGTTATTGCATCTATGAAATGGTGGG TGTTGGCTTCGGTGTGATTCAACTACTAATGTCATTGTCATATTGATTTG ATTAGTTACAACTCAAGTGTGGCTGTTTCGTATTGTATATTACTATACGC AATCAATAGTACTCAGTGGATCTATATTCAAAATTATTTAATACCATACT CACCCTCAATCATATTCTTCAGTGTTTGCCTCGGTGAACGTCAGCCTGAC GCTAACAGCCCCGAGCTCGGTGAACCTGTCTTTATTGAGGCTCTCTATCA AACAGAGTTTGGAGACGCATATTGATGAATTCTGTGATGATCAATGCGAG GTGACGTATTTCGATCTCTATATTTGTGTAACATATCCTCTAGCCTGTAT ATTCAATTTGTATCACTGATTCTACAGTCAGCCGTTAAGTAGCAAGCGTT CCTCTAGGATATGCGGGAACGCAAAACGCTGCCCAATGCAGAAATGAAAT AGTGTTGAATCATTACATAGCAAAGATGCATTTTTATTGATTTGTAGATT GGGGAGATCTTCCTGCACATCGTTACCGACACAAAGCGTGCCCGAAAGAA ACGCCAAACAGACGACAAAGTTCAGATCATTGTGACCATTCAGCTCATTG TGTCGGCCAGTCAGGGTGGAAACACGTTGACAGACAGAAAGATGGCAGAG GATTTACTCCAGTAAGTCAAACATTGGGGTTATGCAAGTATGATAGATGC AAAATCTGTAGTAGCAAATCATTAAGCATTTTGTTTACGTTCTATATCTT CTATGAATTAAAAAGCAATGCACTTCTGTAACCGAATATTGTTAGAATAT TTACATAAACGACCTTGCTTCTTTTTTGCCTCAGGAAAAAGGCAGACCTT TTGAGGCAACTTGCAATGGGAAATTTGACAGTCGACGTCGATGGCAAAAA AGTTCGTCTTATTGACAACAGCGGTATGTGATATGTCATCCTCTATAAAT ATCAAATGTACAATACCATGTATCAACTACATGGTTTCCTCATCGTCCAA TGTCGAACTGTACGCGTATTTCCTTTTTTAGCTTATTTTCTTTAGTTTAT AGCCCTTAGCAGTGGGCAAACGTGTTTATCATCCACGGGTATGCACACTG GTGTCAATTTGTAGGAACAAATGATATTTTTCAGATGATGAAATTTCTTA TTCTCTGTAGACACCAAGGTTGCCACGTCAGATGCTGCCCCGACCCATTC GCCTCCCATTGGTAAGTACCATGTGGAATAAGCGCTTTTTATTTTTTTTC GATGGGCATGGTTTATATTGAAGAACTCTTCAGAACTTTTTCTTTACAAT GAATTGTCATATATTTGCTACATAAGGGTTCAGAAAAGTGAACCTCGTGC AAAGTTTAGACGTATATAAGAGATTAATTACAAGTGATAGAAAAACATGT TTATCGACATTTCCATCTTTATGATAAGAATTTGTGATTTGTTTTGTTTT CGTAGCGGTATATCACGACTACAACTGAATTCTGAAGGATCCGGATGTAT ACTTTGTGTATATACAACTGAACATGAAGGGTATCATGCATTTTTATCAT ATTGCAGTTTCTTTTACTGCAGATGAAGACAAGAAGATTCCCCCGTGGGT GATAGGAGTAATCTGTTCTGTCGTGGCCGTTATAATCATCATTGCCGTGG TGACCGTTCTGTTATGCCGAAGGAAACACGATCCAGAGTAAGTAATTCAT TTACATTGAGGACTAAAGGTTTTAAGTTTAAGCCTTCGGTTTTTAGTAAC CAGCAGTAGAATTAATATCAAAAGTTCAGCATGATACGTCATCCCCAATT TCGATGTAAACGTCTGAGAATCTTCCAGTGCAGCGTGATATGTGGATATT TGACGATATATGATGATATGAAGATATGAAGATATACAAATACATTTGCA TATAGCTCCTCCATATAAATAGCACGAACTTTTATGATGTAGACTTTTTA TGGCATGGTTTGCAAAGTTTGTTTCATAACTGTGTTTTGTGTTCACAGTG CGAATATGCCAGGAAAGAGTGGAAACGAAATGGTAAGTTCTTGATATTAT GATTTGCAACTTGAACTTGAGATTTTCTCCTAATCTCTTCGATATGTTAA ACAAGCATAGCCGTTTGCTCTTTTATGTCAATTGTTTTCTCATATGTGGC GCATAAGTTAGTGTTTTTCATGATAGTGCTTCATGTTCATGCATTGCTTT GTCTAAAACTTCATCATCATCATCATCATCATCATCATCATCATCATCAT CATCATCATCATCATCATCATCATCATCGTCTTCTGCTGTTTTTCATCTG CAGCCGTAGAAAACTTTTGTAGTTGCAATCAGACTTTCTACAATTTTCCT CACTACGCCTTGCATCTTACAAGCTCCCTTAGCCATCGGAACGAGCACTT CTTTGAGTCTTACAATCTGCAACCCACATTGTAGAAAAATCTAGGTACAC CTGCGCGACACGATCACACAGCTAGAGAGGGCTCGGTGGACAATATTATC TACAACACCGAAGACGAGGGTTTCGTGGACAATGTCATCTACAACGCCGG CGACGAGGGGACCGTGGATAACGTCATCTACCAAGGTCAAGACCCAACAC CGAATGAGCCAGAGGTTAGCTTTTGGTTTGTATATCAGCTTCATTTCTGC AGAACGCAAAATTTCCAACCATAGTCACAATCCATTTTGTGATCACTTCA TAAAATAACTTGTGAACTGCGTAGTGCCTTATGCTAAACATTATTGGCCT TTTATAGGCTTGTTTATATGTATAGTTGTAGAAGACCTTACGAAAGTCAC TGTTACTTTTTTGTTGTGTCAATAAAGATTATGTAATGTATCAGTTCACA ATGATACTAATGTATCAGTTCACAATGATACGAACTAAGTCTTCAGATAT GAAAAAGTAGTGATGAACTTTTTCTTCATGTCAGTTGATTATAAGATAAT TTGCTGCGCGCTAAGTCAAGTGGTACGACCCGTTAATGTACAGTTGAAAT CTATGTTTCAACCCTGCAGAATGCACCTGAGTCTCAGTACGAGAGTGTCA ACTAGGGCAGTGATTTCGCGTCTACAGTTGACCAACAGTATCCTTGCATG GTATCTTATATCAATTGAAGGCCGTTGTCGATTCATAAGTAATTTTATTA TACATCTATATGATGAGTAACAAATGCATTTAATGGCAATTTTGCAATAT GGTAAACAGATAGAATACTTTAGGGAGTATAGTTAGTTCAAGCTACCTAT TACATCTTTAGTTACCATTGATATCGGTTACAAAGAATATACCCTGTCAT TTGTCCGATAAGCATAATCTAAAACATGAATATTTCTTACAAATTATTTA ACATTTTATGATATGATTAACATATTTGGCCTGGTTCTATTTTGTGATGT ATACAATCACAGCTATGAGATCAGTATACTCTCTACAAATATAAAAATGT ACACTATCTATACAATCGTATTGTAGCTCAATTCATATCAAAATCTTTTG TAAAACGTGGTAATTTCTAAACGTTCCACAATCCATGAAATATACATGTG TGTTACATAGAATACACATTCTGTATAAGCATTGCATATGGGACTGGGAA TAAGCTGTTTCTTAAAAACGTATACGTATCTTATTCGGAGACATTTCAAG TTTTAGTAATGATTTTCACAGGTGGCATCTTCAGCCCCAATGATGACAGT GTCCAAGGTTGAGGACAGACTCTCAACAGCGTGGCTTTGGAAGTTGCACT CTGTGAAAAGAAAAAAAAATCTCTCATAATCTTTATCAACACATTACTGA AATAAAATTATCATATTAGGACGACCTGTCTTTAACTTTCTTTATTCAAT GTGAAGCACACATGGTCTCTTTGAGACACTTTCATGATAAATGGATTTAT AGCTCATGACAATTTGGTGGAAATACATTCCTCTAATGTTCAGACCTAGT GTCTAATTCAGTACTAGTGCGATTTTAATATAGCTGTGTGGGCTATTCAT CCATCGGTATAGAGCCATAAGGTCATAACCATGGGTTAATGAAGAAAAGA CCCGTACATTTATGATCGACCATTA

Coding sequence (CDS) from alignment at Sc0000086:883002..887776+

>Blg00279.0 ID=Blg00279.0|Name=Blg00279.0|organism=Branchiostoma lanceolatum|type=CDS|length=828bp|location=Sequence derived from alignment at Sc0000086:883002..887776+ (Branchiostoma lanceolatum)
ATGCGACTTGTACCTGTAACACTGGATATACAGGAGATGGTCTCGACAGT
GGACCTGGATGCTCAGATTGGGGAGATCTTCCTGCACATCGTTACCGACA
CAAAGCGTGCCCGAAAGAAACGCCAAACAGACGACAAAGTTCAGATCATT
GTGACCATTCAGCTCATTGTGTCGGCCAGTCAGGGTGGAAACACGTTGAC
AGACAGAAAGATGGCAGAGGATTTACTCCAGAAAAAGGCAGACCTTTTGA
GGCAACTTGCAATGGGAAATTTGACAGTCGACGTCGATGGCAAAAAAGTT
CGTCTTATTGACAACAGCGACACCAAGGTTGCCACGTCAGATGCTGCCCC
GACCCATTCGCCTCCCATTGTTTCTTTTACTGCAGATGAAGACAAGAAGA
TTCCCCCGTGGGTGATAGGAGTAATCTGTTCTGTCGTGGCCGTTATAATC
ATCATTGCCGTGGTGACCGTTCTGTTATGCCGAAGGAAACACGATCCAGA
TGCGAATATGCCAGGAAAGAGTGGAAACGAAATGCTAGAGAGGGCTCGGT
GGACAATATTATCTACAACACCGAAGACGAGGGTTTCGTGGACAATGTCA
TCTACAACGCCGGCGACGAGGGGACCGTGGATAACGTCATCTACCAAGGT
CAAGACCCAACACCGAATGAGCCAGAGAATGCACCTGAGTCTCAGTACGA
GAGTGTCAACTAGGGCAGTGATTTCGCGTCTACAGTTGACCAACAGTATC
CTTGCATGGTATCTTATATCAATTGAAGGCCGTTGTCGATTCATAAGTAA
TTTTATTATACATCTATATGATGAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00279.0Blg00279.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00279.0-exon-Sc0000086-1570713199:883002..883115Blg00279.0-exon-Sc0000086-1570713199:883002..883115Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:883227..883364Blg00279.0-exon-Sc0000086-1570713199:883227..883364Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:884199..884362Blg00279.0-exon-Sc0000086-1570713199:884199..884362Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:884536..884624Blg00279.0-exon-Sc0000086-1570713199:884536..884624Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:884862..884912Blg00279.0-exon-Sc0000086-1570713199:884862..884912Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:885259..885388Blg00279.0-exon-Sc0000086-1570713199:885259..885388Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:885700..885733Blg00279.0-exon-Sc0000086-1570713199:885700..885733Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:886173..886315Blg00279.0-exon-Sc0000086-1570713199:886173..886315Branchiostoma lanceolatumexon
Blg00279.0-exon-Sc0000086-1570713199:886721..887776Blg00279.0-exon-Sc0000086-1570713199:886721..887776Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:883002..887776 +
Properties
Property NameValue
GeneIDBlg00279