Blg00273.0 (mRNA) - B. lanceolatum

Overview
NameBlg00273.0
Unique NameBlg00273.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:516918..519816+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00273.0 ID=Blg00273.0|Name=Blg00273.0|organism=Branchiostoma lanceolatum|type=mRNA|length=2899bp|location=Sequence derived from alignment at Sc0000086:516918..519816+ (Branchiostoma lanceolatum)
TCTGATTCCGACAACTGTGTGACTAAAAAGTGATGATCTGGACAAAACAC AAGGTATCGGTGAACACTAATTGTATCGTCATTGATTTGATATTTTTGTA TTTTCCATTGAAGGTACGAAAAATAAAAGGAGATGTAACGCTAACGTTAG CTATTCGAACGTGACCTTGCGCACTCGCCAATGACCCTGAAGATCCCCGT TTCTAGCCATGACAAAGTAAAGTACCAAGCGTTCCTAAAAGTAACCGGGA GTCTTTTAGTATATACGTACTCCACTCTACGTTACAGTCAAAATCGCCGT CTGTAGCTCTGTGTGTTGGAATGACACTGGTAATCAAAACATTGATCGAG GGTCTGGGTTCATTTAAAGTAACACGGACTCGAACGTTACGGGACCGTTG TAACGTTATCTCCTGTTTCAATTAACAACTTGGCCTGTCACTACTCTAAT GAAAAGGCGTTAATGATTCTTAGTTTATTGTAGATATTGTACCACTAGAT AATGTATCTTTTGCGTTGTGTTATATTTTTCGTTGGCTTGATGGGGAAGC GCAGATGATGGGGAGGGGGGCATTTCGAACGTACGAACATGGTTCTAAAC CGTCATCTGTTCTATTCTGAGTGGTTATCCCTGGCAACCCTCTGTTTGCT TCATTCCACGACAGACCCTCACCGTGGAAGGACGTTCGTCCGAACAGCTC TCGCTATCTCTGTGTTCTACATTGTGTTCTACCGTCTGAATTCGAATCTT GCCCGACGCTAATCCTAACATGTCTCTGCCCATGGAAACACCAGCAGCAG CCGACCCAGAACCATCTCCAGCCGGTAACACTGCTTCAGAGAGACTCATG AGACTAAAAAGCCGGCGTGAGGCCTTTCTGAAGCTTCAGAACCGAGCAAG GCGGCTGCCTGCTATGGAGAGACCTAGGGAAGCCGTCTGTAGTTCTACTC ATCGCAGGAAGGAGGAGCCACTGAGCAGCAAAGGTAAGTATCGCGCCAAC TGGATTCTGGAGTCTGACAGCAGCAGCGACGAGGAGACTACATGTAGCAG TGACGACGAGGGAGAGGACAACCGCGCCACCGAGGAAGCAGAGACCGACC GCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAG GAAGCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCG CGACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGG AAGCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGC GACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGA AGCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCG ACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGAA GCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCGA CCGCGCCACCGAGGAAGCAGAGACCGACCGCGACTGTGCCAACGAGGAGA CCGACCGCACCCAGAATGATGCAACCCTTGACGAGGAGGCGGCAAGTTGT GACGGCAAAGGTAAGGACAATAATTTCTTCTCATTTCTGATTGAATTACG TTAATTAGAACCACGGTTATACATGGTGCAGCTAACAACTTCCAGACGAC CCGGTGAGCTATTTGTTCAGGCAATAATTCTGTCCATGGATCCAAACATG CTCATCTATCTGTGTATTCATACCTATCAATGGCAATAATAACTACCCTG TCCACAAAGTAGTATATGATGTTGATTTACTGATTTGCTTTTGCTGGAAG GTAATGAATAGGAAGTAATCATGGCGAGAAAACGTGATGAATCAGTACAA GCGTAGATTTGAATTCATTTGCGAGCACACTCGCTATAAACAGAACAAAC GTGTTGACTGGTGATTTTCCACAATACAATGTGTCATGGGTAGCATTGCT ACATATGGTACAAATGGACTCCAGCAGCTAACGCTTAGGTGAGATTTTTT TCTGACAATAAAAAGTGTTATAAAAAAATACAAATCATATCTACTGATTC AAAATCAAGATCATACAACACTCAATTAATGTCCGAGGTCTTATTCAGCG TACATGTATTTATAGGTTGTACATTCTGTGATGATGCAACCTGCTTACTT GCTTATGATAAGGGTGCCGGATCGAGATGACGTCACTTGTGCTAGAAGAT GCAGTCTGTACATTGATTGAAAACCAATATTACTGTACGACTTGTAGGGA AGAAGAGAGGTTCCAGGAGAAAGGTGAAGTGGTGGAGGAAGGTTAAGAGG TTCTTCTGCTGCTGCGTGAGGCCATACGTCATGGAAGACGAGCTGCATAA GAGTGTCAGTGTGGTCAGTAACACTGCTTTTTATTTCTTTATCCATTTGA TATAACGTTACCGACACATAAAAAAATCAGGACGTGGTAAGGAGGTTTTT TTCTTAGTCCACACACACATACACACACACACACACACACACACACACAC ACACACACATTCACACAAATACGCGCGTGCAGATCACACACGCACACACG TACATTCATTCACATATGCATCAACACACATGAATCAGAATTTCCAATAT TCTAAAAGTAATACTTTTCTGGGACAAAAATAAATCTGTTGATAGTCACT ACTAGTGCTTTGATCATTTTTTCTTTCCTTTCAGAAACGACGAGGCAGTT TGGAATACTTCTACTTTGAAGACTTTGATGCTGTCTACTATTTTGATGAT GCATCACATGAACTGTATTAGAAACTGTTATATTGTATGAGATGAGAATC ATGAAGATCACTTTCTATAATTGATTGTAAATAAGCAATAAAACAAATT

Coding sequence (CDS) from alignment at Sc0000086:516918..519816+

>Blg00273.0 ID=Blg00273.0|Name=Blg00273.0|organism=Branchiostoma lanceolatum|type=CDS|length=1044bp|location=Sequence derived from alignment at Sc0000086:516918..519816+ (Branchiostoma lanceolatum)
ATGTCTCTGCCCATGGAAACACCAGCAGCAGCCGACCCAGAACCATCTCC
AGCCGGTAACACTGCTTCAGAGAGACTCATGAGACTAAAAAGCCGGCGTG
AGGCCTTTCTGAAGCTTCAGAACCGAGCAAGGCGGCTGCCTGCTATGGAG
AGACCTAGGGAAGCCGTCTGTAGTTCTACTCATCGCAGGAAGGAGGAGCC
ACTGAGCAGCAAAGGTAAGTATCGCGCCAACTGGATTCTGGAGTCTGACA
GCAGCAGCGACGAGGAGACTACATGTAGCAGTGACGACGAGGGAGAGGAC
AACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGA
AGCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCG
ACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGAA
GCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCGA
CCGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGAAG
CAGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCGAC
CGCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGAAGC
AGAGACCGACCGCGACCGCGCCACCGAGGAAGCAGAGACCGACCGCGACC
GCGCCACCGAGGAAGCAGAGACCGACCGCGACCGCGCCACCGAGGAAGCA
GAGACCGACCGCGACTGTGCCAACGAGGAGACCGACCGCACCCAGAATGA
TGCAACCCTTGACGAGGAGGCGGCAAGTTGTGACGGCAAAGGGAAGAAGA
GAGGTTCCAGGAGAAAGGTGAAGTGGTGGAGGAAGGTTAAGAGGTTCTTC
TGCTGCTGCGTGAGGCCATACGTCATGGAAGACGAGCTGCATAAGAGTGT
CAGTGTGAAACGACGAGGCAGTTTGGAATACTTCTACTTTGAAGACTTTG
ATGCTGTCTACTATTTTGATGATGCATCACATGAACTGTATTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00273.0Blg00273.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00273.0-exon-Sc0000086-1570713199:516918..518527Blg00273.0-exon-Sc0000086-1570713199:516918..518527Branchiostoma lanceolatumexon
Blg00273.0-exon-Sc0000086-1570713199:519215..519330Blg00273.0-exon-Sc0000086-1570713199:519215..519330Branchiostoma lanceolatumexon
Blg00273.0-exon-Sc0000086-1570713199:519652..519816Blg00273.0-exon-Sc0000086-1570713199:519652..519816Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:516918..519816 +
Properties
Property NameValue
GeneIDBlg00273