Blg00262.1 (mRNA) - B. lanceolatum

Overview
NameBlg00262.1
Unique NameBlg00262.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000807:17205..26355+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00262.1 ID=Blg00262.1|Name=Blg00262.1|organism=Branchiostoma lanceolatum|type=mRNA|length=9151bp|location=Sequence derived from alignment at Sc0000807:17205..26355+ (Branchiostoma lanceolatum)
ACAAACTTCATGCGGCTAACGCTCTACATCATGATGAGATGTGTGCTTCT CCTCGTGGTTTTGGCTGTGTCATTGATAGCTTGCAAAGGTAGGTACTTTT TCACGTCAATCTACACGTCTATCATAAGTAACGTTAAAGCCTAGGTTACA CATAGCCGAACATGGCTCCCGAACGCTAGCCGACTCAGGTCGGCGGTAGT TCGGGAGCATTCTGACCAGTTTTTGGGCCACGCCTATCTTTGGCGCCGAA CATGCGCCGAAGATGCGCCGATCATCTCCTAACCAGTACACGAATTACTC CCGAATGGGCCCCGAATGCTTTCTAGCTTACTCCCAACCATCCCGACCTC TAGCCGCAGACTGCCGAATCTCTCCTGACTAAACCCCGACCGATTGCAGA CCCTCTCACGAATTGAAATGGACATATTCAGCGACTTTCAAAAGAGGGGT CATTTTCGGTTTTGATTAAAATAATCCATTCTATTTTGTTGTTAACATCA CCGAGAGATCGAATTCGGATCATGGCTAGCTTTAATACTGCTTTTAGTGT TCTTCTTTGTTTTTGGTCGTGTGAAGGTCGGGGGTGATTCGCCCACGTTC CGATAGTAGTCACTTGGTTGAGAATTAGTTAGCAGAGTTTTGTCTACGGC CTTGGGGTGAGTTATGGGTAGGTTGGAAACTAGTTGGGAGTAAGTCAGTA GTGTTTCTGGCGTGGTTAAGGTTCTAATTTTATTACTGACTCAATCCCGA ATACCAGCCGAGCACTAGCCGACCGCGCCGAACACCAGCCGAACACCAGC CGACCCATTTCAGACCCTCCGTCCAGAGCCGAATGTTTTGAAATTTTCAA AACATTCGGCTGGCGCAGCCGAACACCAGCCGACTCAGCCGAACGCCAGC CGACTCGGCCGAACGCCAACCGAGCTAGCTCCCGAATCACTCCCGAATCA CTCTAACCATGGTCGGGGGAGAGTCGGGAGGCCATGTTCGGCTATGTGTA ACCTAGGTTTAATACACATTCAAAACGCAGCTACTTCCAACGGAAGAGAT TGGCGCTTCAGTTTTAAAAACGTCTCGCGTCTCACAAGTATTCAGATAAC AACGTTGTATAACAAATGATTTTTCGTGTGCATAAGTGACAAAATTAATT TATGATATTGACATGATACAGAATTAAATGTTTTTTTGCCAGACTGGTGT CACTGACTCCCAGAAATCGTCGTGAATAATGATGAACCAGCTTTATATAA ACTGAATTTGATACGCGTATACTAAGGATGTTACAATGTATATCAACAGG TGAAAATGCCTACTTAACGTCCCTTCATGGATGGGCCTACTTCAAGGTTC GTGCGTCAGGCACGATGACGTCATCCAACATCAAAAGCACCTGTGAGGCG GCGGGGCTTATCATGCCCTGTACACAGGCAGCAACGTGCCCAGCGTCGTC CCCGGCCTGTGTGAACACAGGTCTAGGGGGGTGCGGCGCTCCGATGCGCG ACATCTCCGATGCTCTATGTGACTACACGTACACCCACGATGCAAGAGAC TGTCCTGAAATGGAGGGCATATTCACTCACTACAGTCACTACTCTTTCCA AGGCGAATCTGTCGGTGTCCAGCCGATCACCAATCCAGGTTCATATCTCG ATGGTGCAGACTACAGTGATCAGTTCGCCTTATGCGCAGGTGGGGTAGAT TTGTGGCTGTTCTAGAACCTCATACCTACGCCAAATAATGTTAACGTTTT TGAGTAACGAATCATAAATATTTCTATATATGATTTCCTATTATCGTGAT GTCCTCATTTGCATAAAGTACATTGGTCAATCATATTCTCTACACAGTTG CTCAAAGTATGAAGTTCAATCTTAGCAAACAAGACTATTGTAGCATTGCC TCATAAATTACATAAATGAAGCCCTCATTTGCATGATTTATCCTTAACAC TGGTCGCATTTGCTTAGCTTCCAAATATTGCAAGAATGACTTAACGTGGG TCGCCCTAACATATGACGTTTTTTTACGAGCTCGAACTCACTGCGCTCCA TTGCTGGTTGCCAGAGAATGGTCATGTTTTAATGAATGAATTTTAAACAC ATTCATCTAAAGAACATACATGGACAAGAAATGTATTCATATTGTTCATG GGCCCTTCACGCTCCGAGTTACAAGCGGCAAACGCTGTGAGACGTTTTCA CGAATGTACCTTCTGATTTAGTGCTACGCCAGATAGTGTGCCTAACGCTT ACGCTTTGGTAATTTTGATCTCTTCGGAAGTTGGTGATGAAGTTAGGGAA ATGTAAATAAGGCTTGAATTCTGCTATATTCTAGCTTTCTTTTGACCGGA AAATTTTGACTGTGTGCACTTCTAACGTCATGTGAGAAGGGCTATATCTA GCGCATCCCAGCTCATGTTTTCACGGGCAATAGGCTACTACGCACTTTGC GCGCGGCCCGACGTACGTATTGCATGCAACCCGACTTAGAAAATCATTAC GAANCGGGAAATAGGCTACTACGCACTTTGCGCGCGGCCCGACGTACGTC TTGCATGCGACCCGACTTACAAAATCATTACGAAAAAACGACACCGCTTA CATCAACAATACTCCGTCTACTTATTGGGAAATATCTTCGCCATCTCTGT ATTCAGTTTCCTTTTCATAGACGGTACCAATCACATGTTAGAGCGTTACA AAGCAGTGCGTTGAATCGCCGTCCGCCACCATCGCGGCCCAAAAAAATGG CGGGAAAACAACGTCGCCAGACGGCAGCGATGTTTACTTTATTTTTTTGG TCGGTTTTCTTCTCAACAAACACTTAAAGATTCAATTTTTTTTGTGTTTT ATGAAGTTATGTTTCTAATGTGTATGATAGTTGTGTATCTGCTTGGCACA GGTCGTATATTTAGGTGCCGCGCCGGTTAGCTACGCAGTGACCCTTTACT CAGCGTTGCCATCATTATTGTCAAAATACTATTGTCGACAAAACAAGAAA TTAATATGTACACATGTTTTGAATGCAAATAACAATTATGTGCATGAACT TGGTTTATTTACCTTCCTTATCAGCATAGTCAGTGGACACAAACACGACG TACTTATGCATAATAAGATCACTAAAAAATCCGTCACATGTTAGGGCGCG TCATAAGTTAGGGCAACCCCCCGTTACACATCATTTGCCACTGACTATTG ACGTCTTTCAAAGTTTGAAACTCAATAGGCTCCTGCAAAATAAGCTGCTT GAAATGCCGATAGGGGGCTCAAACGTGTCATCCTAGAGCTATTTAGCCCT CAAGCAAGCTAATAGCATGTCCAGAATACGAGAACAACCGGAAGTTCCGC TGCAGTACCATAACAGCATAACTACGTGGGGCAAAATCTAATCATTTCGA AGTCACATGAAGATGTACCAACCTAGGCATTCTCGAGTTATCGTGTTCAC TAACACACAGACACACCAGAAAACATAACATTATTGGCAAAGGTAATAAT TGGATTTCTTGTATTTCAATGATAGCCAACCCCCTCCCTCCCCAACTTAA GCCTAATAGTTTCTAGACTGGGCTTATTTTGGGATTGAGCAGTGGATCAT ACGTTACAAAACTTCTGTGCCACCCTCCGTCTCTACCACGTCTCTACCAC GATCACTGCTCACTGAGTCACGTGTCCTATCTGCATAACTTAACGTCACA GAGACAGTGGATTGCTCATTCCTTGATAAGGACTTAAATTGTTCAGTCAA AAATTTGGATAAGTTTCAAACACTTGTGTTGGAAATTGTACATTTAGTTT AAGTTTGAAACAGAATATCTCCTTCTCTCTAAACTGTCTTTAAGCCGGCG TCACAATTCATGCAAGCTTCTGTCGAATTTGTAGATAGCCTGAAGCTCGC CGAATTTCAAAATCTCGGGCGTCGACCGTATTTTTCGCTGCAAATCTTCC CCGTCACAAATTGAACTGGGTACAGGCGAATTCACGTCGAACACTGATAA TTATAAATCTCCCATGAGATGGCACAATCTCTTGGACATGGACGAAGTCA GAATCGACTAAAATTGGAAAAAACAATATTTGGATCAACTTCTTTGATTT CTGAGTTGTGGGAAATACATTGTATGCAGGGCATGAGTAGAATGTAAAAA TAATAGCATTAACAATAATTTTGTGATTAACCAACTGAAATACTACCACA AGAGAATAGAAACAAGCTCAACAAAACCCGTCTACTTAACGTAGATGCTA TGGTTTGTAGCCACAGTTCATGAATATATAAAGTGACAAATCCAGACCAA TAGCAACAAAGGAACAAGAAGTATTGTCCTCCGTGTCCACATTTCATTTG TACTCATTTTTTTCAATGAAGATTAAACTCTGCAATTGAATTGTCTTTCA TCAGAAAAATTAGGCAACATTCTTTAACAATTCAATACGGTATTCTTTAT CATCTTATGTTATAAGCCAAGTTGTACGAAGCCTGAGCGAGGCTCGCACG AGGCCGATGACTATGGCCGCCCGACTATAGGCCAAGAGTTGGCCGTTGCT CGGGCGAGCCTAGATACGGGTAACCTTTTTACGAGCTCTCCGAGCTCAAA AATCGCCATCGAGGCCTCACTGAATCTAAGCGCAGCTTACAGTGCCCCGC GAACGTCGGCCGAGCTCCGAGAAGTCGCCCGAAGCTTGCGGAATCGACAG GACGTCGGTCGTACTTCGGCCGAAAATAAAAACAATTTGGAGCTCACCGA CTCGTTTGTGACGGGGGCTTAACAGATATATTCTATCATTTTTTTGTGCT GTAGATCGTTTCACTAAATAACTCCAAGTTGTTTTCCAGATAACGACCCG TGCGCTTCCAATCCCTGTCGCAATGGCGGTACTTGTGTGGGTGGAGTCAA CTCCCACACCTGTCAGTGTGTGCCTGGTTTCACAGGAGACAACTGTGCTC TCGGTATGAGTCACCTTTCACATCTCTAGATCTTGTAGCTTTTATACTGT CTTCAGTCTCACCTCTATGATCAACTTCACTAGAAATGACAACTTTGGAC CTTGACTGATTGATATCAATCGTGAAAGCTATAAAAAGGCGTCTTAGCGT CCGTACCTCTTACTGTACTTAACACGACTGACACTGTACATCATAGTGAG ATGGGTGCTCCTCGGGGTTTCCGTAAATTGTATCCTTGGTAGAAAAGAAA GTACTTTAGCACGTCAATCTACACGTCTGTCAATCGTGAAAGCTATAAAA AGGGAGATTTAAGGTTCGTACGGTGTACCTCTAACTCTATTTCAAACGTG ATACGGCTGACACTGTGAACATCATAGTGAGTGGTTGATTCTTTTCGTGG TTTTGGCTGTGTCCTTAATAGGATGCATGGGTAGGTATTTCCTAACGTCA TTCTACACGTCTGCCATAAGTAAACACATTGAAAACGCAGCTAGTTCCAA CAGAAGAGATTGGTGTTTTAGCGTTAAAACCGTCTGGTGTCTCACAAAAT GTCACATTTAGGTTGACCAAGTTGACAAAATGAGTTTACATTGGATTAAG CGGCAATATGGAAATATGCCCTTCGAACATGTTGATGAGTTTATTTGAAA CAACTTGCTATGAAAATGGAATTGTTTTATCTTATTCAAACTACTAGCTT GTCACTGATGTAATCGGACTAACACGTATGTTTGTCATAGAAGCCTCTTA CAAAATGAACAACAAAGGCCAACATTCGCCAAAAATAGTTACTGAAGTTT TGGAAATTTTGGAACTGTCAAACGTTTCAGACAGAATCCGCTGTCTTTCG TTAGTGACTAAGGATGATTTGGCAGAACTAGGTTATATACCAAAACTCTA ACAGGCCAAAATTCCTAATGGAAGTCAAGATATCTATGCATGTCCCGTCA TGACATTATGCTGAACATAATTATATACATGTAATGATCTCGAACTGTGT TTGTGTTTGATATTTTCCCTGGCTCATTACTTGAACCGAAATCGGTAGTA CTTAGAACAGTAAGTTTATGCCCATTTTTTTCAACATAGTTCTATTATAA ATAGCCGCAGGAGAATAATATTACAACGTGTGAAAGAAATATTAGATTGT AGTGGAAACTCCTGTCTGTTCTATTCTTGCAATTCGTCCAGTGACATAAA GTCAGTATGTACTATGATAAGGTCCAGAATTACCGATATTACCGATATGT ATACCCAAACTTACTGTCATAATTTGAGTATGGATACAGGCAAGCTAAGA TTTTTTAAGGCATGCAAAACATCATATTCTATGGAAAAATATCTAGAAGT AGACGACTTTGATTTACGTTCAGCTATTGGCAAAATTAGATTTGTGCTCA TCCCTTGAAATAGAGAGAGGACGGTAAAAAAAAGTTACCTGTGTGCGAAA GAACTTGTAAATACTGCATGTCAAACACAGTGAAAGATGAAATACATTTT ATTTCAAATTGCCCCTTCTACGATCAAGAAGGAAAAGCGATGTTTAAAGA GGCCACCAAATTCCATCCAAATTTCTCCATGGTTACAGACAAAAAGAATT TAGAATTAGTATTTAGACTAAAATAGTCACATGTTATATTGTTACCCAAT GTCCGTCCGTCCTTTCATGTACTTGCAATCAGCCTACGGGCAAGAACTTG CAATAAACTTTAATATTATATGCATACACTAAGGATATCATATCAATGTA CGTATTTCTTACTACAGGTTCAGATGCCTACTTAACGTCCCTCCATGGGT GGGCCTATTACAAGGTTCGTGCGTCAGGCACGATGACGTCATCCAACATC AAAAGCACCTGTGAGGCGGCGGGGCTTATCATGCCCTGTACACAGGCAGC AACGTGCCCAGCGTCGTCCCCGGCCTGTGTGAACACAGGTCTAGGGGGGT GCGGCGCTCCGATGCGCGACATCTCCGATGCTCTATGTGACTACACGTAC ACCCACGATGCAAGAGACTGTCCTGAAATGGAGGGCATATTCACTCACTA CAGTCACTACTCTTTCCAAGGCGAATCTGTCGGTGTCCAGCCGATCACCA ATCCAGGTTCATATCTCGATGGTGCAGACTACAGTGATCAGTTCGCCTTA TGTGCAGGTGGGGTAGATTTGTGGCTGTTTAACAACGTAGCATTACAGAT TATAGGGTTCTTTTTTTAATCCTTTATGCTGTAGATTGTTCCACTAAATG ACTTCAATGTGCTTTCCAGATAACGACCCGTGCGCTTCCAATCCCTGTCG CAATGGCGGTACTTGTGTGGGTGGAGTCAACTCCCACACCTGTCAGTGTG TGCCTGGTTTCACAGGAGACAACTGTGCTCTCGGTATGAGTCACCTTTCA CATCTCTAGATCTTATAGCTTTTATTCTGTCTTCAGTCTCACCTCTATGA TCAACTTCACTAGAAATGACAATTTTGGACCTTGACTGATTGATATCAAT CGTGAAAGCTATAAAAAGGCGTCTTAGCGTCCGTACCTCTTACTGTACTT AACACGACTGACACTGTACATCATAGTGAGATGGGTGCTCCTCGGGGTTT CCGTAAATTGTATCCTTGGTAGAAAAGAAAGTACTTTAGCACGTCAATCT ACACGTCTGTCATTAGTATACACATTCAATACGCGGCTAGTTCCAACCAA GGAGGTTATAACTTCCTTGTTCCAACAGAAGAGATTGGAGGTTCAGTTTT AAAATCGTCTCGTGACTCGCAAGTATTTACATTTAATGCTTGACAAATAA GTTGACGAAATAACTTCCTGTGCAAATGGAATGATTTTATCTTATTTAAA CTACGTTGTCACTGATGTAATGGGATTAACACATATGTTTGTCATAGAAG CCTCTGGACCAAATGAACAGCAAGGGCCAACATTCCAAAGATCCTGTGTT AGTCTGCTGAACATTTTCCCTGGCCCATTATATGAACAGATATTGGTAAT GATATTATACACGTATACGAAGGATCTTTTATCAGTCTTTGTATATGTTT CATTTCAGGTTCAGATGCCTACTTAACGTCCCTCCATGGGTGGGCCTATT ACAAGGTTCGTGCGTCAGGCACGATGACGTCATCCAACATCAAAAGCACC TGTGAGGCGGCGGGGCTAATCATGCCCTGTACACAGGCAGCAACGTGCCC AGCGTCGTCCCCGGCCTGTGTGAACACAGGTCTAGGGGGGTGCGGCGCTC CGATGCGCGACATCTCCGATGCTCTATGTGACTACACGTACACCCACGAT GCAAGAGACTGTCCTGAAATGGAGGGCATATTCACTCACAACAGTCACTA CTCTTTCCAAGGCGAATCTGTCGGTGTCCAGCCGATCACCAATCCAGGTT CATATCTCGATGGTGCAGACTACAGTGATCAGTTCGCCTTATGCGCAGGT GGGGTAGACCTATGGCTACTTAACATTATGAATCATTAAGTTTCTCGTTC AGTCTTAAGTGCATGAGGTGATAGATTAAGTTGTTTTTTTTTTGTTATCT GTATCAGATGCCGGCCTCCGCAACAAGAATCCCTGCCCACCCAACTGGGA CTACGATGACTTCGGCCACTACTTCATCTGCAACGGTGAGCACAGAATGT TTATTTGATAGAGAAGTCTTATATAGCAATAGGAATAGCAATAACAATAA GGGCAGACATGGAAATAATAGTCACCTGGATTTTATTGTGACACAAGCAG CCACCAGCCAACAAGATCTGCTGATCGTCATAACATACACGTACATAAGT TATCACATAAAAATTATTCATTTTCTAGATGCGAAACCTTAAATCAATCA CTGTTGTTATCGTATACCCAGGCTATGGGCGCGCTGACCCGGACCCGTAC CGCTGTGAGAGCTTCTCCTGTCCGTCCGGCTGGTCCTGTCAGGACGTGGG GCAGCTCTCCTTCATGTGTGGCGCACACGCCTAGAGTCCGAAATGTGAGC AAAAAAATTCTGTCACCTCGGTCATAAACTCTGTTCGACATTAGATTCAC GGCAGCAAAACTCTCCAAGCAGGGGTTCGTCTCCGGATTGTTTTTTCGTC TCCGGATTGTTTTGGCGTCTTTCTGTGTGTTTTCATCGGGTTGGTGGACA TCAAGAAAACCCGACAAAATAGAAATCCTGGCAAAAACGAATAGAAAGGA G

Coding sequence (CDS) from alignment at Sc0000807:17205..26355+

>Blg00262.1 ID=Blg00262.1|Name=Blg00262.1|organism=Branchiostoma lanceolatum|type=CDS|length=1278bp|location=Sequence derived from alignment at Sc0000807:17205..26355+ (Branchiostoma lanceolatum)
ATGCGGCTAACGCTCTACATCATGATGAGATGTGTGCTTCTCCTCGTGGT
TTTGGCTGTGTCATTGATAGCTTGCAAAGATAACGACCCGTGCGCTTCCA
ATCCCTGTCGCAATGGCGGTACTTGTGTGGGTGGAGTCAACTCCCACACC
TGTCAGTGTGTGCCTGGTTTCACAGGAGACAACTGTGCTCTCGGTTCAGA
TGCCTACTTAACGTCCCTCCATGGGTGGGCCTATTACAAGGTTCGTGCGT
CAGGCACGATGACGTCATCCAACATCAAAAGCACCTGTGAGGCGGCGGGG
CTTATCATGCCCTGTACACAGGCAGCAACGTGCCCAGCGTCGTCCCCGGC
CTGTGTGAACACAGGTCTAGGGGGGTGCGGCGCTCCGATGCGCGACATCT
CCGATGCTCTATGTGACTACACGTACACCCACGATGCAAGAGACTGTCCT
GAAATGGAGGGCATATTCACTCACTACAGTCACTACTCTTTCCAAGGCGA
ATCTGTCGGTGTCCAGCCGATCACCAATCCAGGTTCATATCTCGATGGTG
CAGACTACAGTGATCAGTTCGCCTTATGTGCAGATAACGACCCGTGCGCT
TCCAATCCCTGTCGCAATGGCGGTACTTGTGTGGGTGGAGTCAACTCCCA
CACCTGTCAGTGTGTGCCTGGTTTCACAGGAGACAACTGTGCTCTCGGTT
CAGATGCCTACTTAACGTCCCTCCATGGGTGGGCCTATTACAAGGTTCGT
GCGTCAGGCACGATGACGTCATCCAACATCAAAAGCACCTGTGAGGCGGC
GGGGCTAATCATGCCCTGTACACAGGCAGCAACGTGCCCAGCGTCGTCCC
CGGCCTGTGTGAACACAGGTCTAGGGGGGTGCGGCGCTCCGATGCGCGAC
ATCTCCGATGCTCTATGTGACTACACGTACACCCACGATGCAAGAGACTG
TCCTGAAATGGAGGGCATATTCACTCACAACAGTCACTACTCTTTCCAAG
GCGAATCTGTCGGTGTCCAGCCGATCACCAATCCAGGTTCATATCTCGAT
GGTGCAGACTACAGTGATCAGTTCGCCTTATGCGCAGATGCCGGCCTCCG
CAACAAGAATCCCTGCCCACCCAACTGGGACTACGATGACTTCGGCCACT
ACTTCATCTGCAACGGCTATGGGCGCGCTGACCCGGACCCGTACCGCTGT
GAGAGCTTCTCCTGTCCGTCCGGCTGGTCCTGTCAGGACGTGGGGCAGCT
CTCCTTCATGTGTGGCGCACACGCCTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00262.1-exon-Sc0000807-1570713199:17205..17292Blg00262.1-exon-Sc0000807-1570713199:17205..17292Branchiostoma lanceolatumexon
Blg00262.1-exon-Sc0000807-1570713199:22044..22157Blg00262.1-exon-Sc0000807-1570713199:22044..22157Branchiostoma lanceolatumexon
Blg00262.1-exon-Sc0000807-1570713199:23922..24311Blg00262.1-exon-Sc0000807-1570713199:23922..24311Branchiostoma lanceolatumexon
Blg00262.1-exon-Sc0000807-1570713199:24424..24537Blg00262.1-exon-Sc0000807-1570713199:24424..24537Branchiostoma lanceolatumexon
Blg00262.1-exon-Sc0000807-1570713199:25213..25602Blg00262.1-exon-Sc0000807-1570713199:25213..25602Branchiostoma lanceolatumexon
Blg00262.1-exon-Sc0000807-1570713199:25712..25789Blg00262.1-exon-Sc0000807-1570713199:25712..25789Branchiostoma lanceolatumexon
Blg00262.1-exon-Sc0000807-1570713199:26026..26355Blg00262.1-exon-Sc0000807-1570713199:26026..26355Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00262.1Blg00262.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000807genomeSc0000807:17205..26355 +
Properties
Property NameValue
GeneIDBlg00262