Blg00261.0 (mRNA) - B. lanceolatum

Overview
NameBlg00261.0
Unique NameBlg00261.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000807:28248..34777+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00261.0 ID=Blg00261.0|Name=Blg00261.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6530bp|location=Sequence derived from alignment at Sc0000807:28248..34777+ (Branchiostoma lanceolatum)
GTCGACAGCTCTACATCACAATGAGGTGTGCGCTTCTCCTTGGGGTTTTG GCTGTATCCTTGGTAGCTTGTGAAGGTAAGTAGTAAGAACTTCCACGCGT ACATTTCTACCATATAATATTCTCATTAGGAGCAAATGAATTTTAAACGC AGCAGGTTTCAACGGAAGAGGGTGGCGGTGTCTCTAAGTACATGTATCCA CAAATCTAAAGAAAAAAAAATTGTACGACAAATGAGTTCACCGAAGAGCA TTTGTTAGTTTGGAAAAGCTTTCCTTCTCGCATGTTAGTTAATTAGTAAC ATTTTGCAACATATTCCTGTGACAATAGAATGGTTACATGCATTGGAATT TTAAATGTAGCATATGTTAGCCATAGAAGCCAATAAGTAAAACGAATTAC AAGGTCGAGATTCAGATGTACCGTCATAACAGTGTGTTGAACATGTAATG AGGTCAAAATGTGTGAGTCTGTTTAATGTTTTTACCCTGAATCATTACAT GAACAGATATGGAAGCTTTCTGTTTTACTTGCAAATTACTGTACTATTAC TTGCGAATTACTGTTTTACTCGCGAATTACTTACTATGCGCATACTTAGG ATATCATAGTAATGACTGTATATTTCTTTCTACAGGTGAAGAAGCCTACC TGACTTCCCTCCAGGGATGGGCCTACTACAAGGTTCGCGCGTCAGGCACG ATGACGTCATCCAACATCAAGAGCACGTGTGAAGCTGCTGGGTATGTCAT GCCCTGTACCCATGAACCGACGTGTCAGTATATGCCCTCCACCTGTACAG ACACAGGTCTGCTGGGCGTTGGATGTGGTTCTGCCCCTATGGACGACATC TCACAGGTTCTGTGTGGAGACCATCCAGCACGATGCCCTGCAATGGAGGG CTTATTTACTTGTTTCACCACCAGGCGAGGCGAGGCTGTCGGTGTCCAGC CGACCACCAGGCCAGGTGCTTGGCTCAGCGGCGCAGACTTTAGTGATCAG CACGCCCTTTGCGCAACGGGTGAGTAGATTTATGGCTATTTAACAACGCA ACATCATAGATCAACGGATTTCGCCCCTTGTATTAATACCCCTCGAAAAT GCAACCATGAGTATTGATGTCAATCCAGCATAACAACATCACAAAAAGCT TTTACTAGTACATAAAAATAAATTGTGGGGCAGGGTCAATGTACCGTAAG GATATAGATCATTCAACTAAACGTTGGCGCAAACTAATGTTTAATTGTAA TGTTAAATTATTCATTCTTCGCTTCTATTACTTTCTTTTCACATGTCATA TGTTCTATATCCTGTTTCGTAAGATATGACCATACCTTTGCTTAATTAAG AACGGCATGCATTCTTCATGACGTTCGTGTCATAAACAGCTTGTTCCACA TGTACGTGTAACGTTACAATACCGACAGTTATAGTCGTGATGTATATGGC GTTTGAAAATGTGTCTTTTCTCTCAACTCTTTTACGATCTCCCTACAGAT TTAGTTGACGAGTGTACTTCGGATCCCTGTCAACATGGCGGGACGTGCGT CGACAAATACAGACACTACACCTGTCAATGTGTGCCTGGTTTCATCGGAG ATAACTGTGAGAATGGTAGGATTGTTTCGTATCATATCTTTTCTTTCAGT TTGTCGTTACTACGGAATCCTCTGAACATCAGTTACCATCTAACAAAAAA TACCTACTAGGATATTTACCTACAAAACGCTTATCTGCTCATGGTGTGCT CAACTTTAGTTACTGGTGTACTTGTACTGCTGAATGTGTGAAAATAATCT CTATATGCAAACATTTATTGATATCGATTGATTGATGATTGCCTATTGTA AATGCGATTAAATATCATCGTTGCTTACATCTTGGTTCAGATCTCCTTTC AGTATTTTGTTGACAATGAAGGTAAGATGATATCCCAGCGGTACAAACTG GAGGAAGATCATGACTGAAGGAAGATTATAATGATATACTGAAGATTATA ACGAAATAATCATGCATCAAAAATTTCTATGCAAAATTATCAAAACCCTA CCTAAAACAAACAACTCCGGCATATCGTCTCTAGCATTTCTAACGCATTC GTGCGGTAACGTCTCTTTTCTAGACATCGACGAATGTCTCGAGGGTGCCT GTTTGAACGGTGCCACCTGTCTGAACACACCTGGGAGCTACAGCTGCACC TGCAGAGATGGCTGGACTGGTCGGAATTGTGAAACAGGTCGGGGAACTAT ATTGAGGATCTTTTACATCTAGTTATGATAATTGCATTATGCTCAATGAT CAAACGATATGACAAAGAAGTTCAGATTACAATTTAGAAGAAAGAAGACA GCAAGTTGTCAAAGCTTTCAAAGGTTTTTCTGCAAAGATAGCATAATAAA CCACTTGACATCCGCTTGAATGCAACAAATTTCATTCAGCCTCATCATCA TTGATTGTACATAGCAAATTCTAATTTGCTGCTTTATAACTGGCTGATAA CGCTGAGATTAATGGGGGTCCAGAGGTTCGTGAATACAGTAGGGCCAGGA CTAATGCATGTATCTCTGCTCCTCTCCCCTAGTTCTGAACTCCGACAAAT GCTTCCAGCTGTCAGTGGAGCCCAAAACACACCTTGCGGCCGAGGGACAA TGCGCCACTCTTGGAGGAACTCTGGCCGGGCTGAAAACCGTGGCTGAACA GGAGTTTCTAGCCAACGAGATCCGCCTGGGGACGAACGTGTCCCACTGGA TCGGTCTCAAGAACGGACCGGAACAGTTCCTGTACACCGACTTCTCCACC ATGAGCCGCAAGTTTCTTGATATAATATTCTAGTTGTGTATGTATGTATG TATGTATGTATGTATGTATGTATGTGTGTGTGTGTGCGTGTGTGTGTGCG CGCATGTGTGTGTGTGTGTGTGCGCATGTGTGTGTGAGTGTGTGTGTGTG TGTGTGTTTGTGTTTGTGTGTGTGAACGTGTTTGAATGTGCGTGCGCGTG TGAATGTGTGTGTGAATGTGTGTGTGGTTGTGTCATTTGTCTGATTGCTC GGTCGGTTTGTAGTTCCCCTGTTCGTTGTCTAACTTCCTCACCATTTGCA CCACAGCTCAACTGCGCTGGATGTACGGAAAGCCAGAGAACCTGTGTGCC CTGCTGGACAAGAACGGCAACTACGACCTGAACGCGGACTTCTGTACGGA ACAGTACAACTACGTCTGCGAATCCGGTGAGTTAAGTAATTTGAAATAAA GCAGATATCCACGTATCAAGATCATCTGTATCAAGACCAGTTGGAAGCAC CGTTGTTCTGTTAACTGTTAACAAACCTTACATGTTAATAAGCCGTACAT GTAAAATACGGCTAATATCAGAGTTGCAAAAGCAACAATGCTGGCAAACT GTACTTTTCAATCTTCTTTGGCAAACGTTTTCCGTTCTTTTACACGTTTA GGGTCGAAAAGCATAGTTTGAGCTACGTTATCATTAGTAAAGATACCTGA TATATGTGACAAATTTCAGAGCAATCACTTCCCCGCTGTCTGTCTTAGAA ATAATTTAGTGCATAGGGCCCGTTATCATGTAATGTATTGACCAAAATAT GTCCTTTTCAGATGTCGTCACCTGCAAGCAAAATGTCTGCCTGAACGGGG GCAACTGCACCTCCTGCTTCAACGAGAGTTACGCTTACTGCGACTGCGCA CCAGGCTTTGTAGGAGACCGCTGTGAGATCAGTAAGTGCCATCCCCACAC ATGTACACAACACTTGGTAGTAGATGACGCAAGGATCTTGGATAATGTCA ATCATATCTCTTTTTTTCCAAATCAAAAGCTTCTGCTGAAACGTCAGAGG TGAGACAAGCTTGTCCTATTGTGACATCATGTTACCAATGCTGTTTTTGT CCTTGGTGCTGAACGAGAAGCCAGTTCTTGACGCTTGTCTATTTTTTATC TATAGCGTAAACTTTCTCGATAAATATCTCGCCTTTACAGATATCGACGA GTGCGCCTCGGATCCCTGTCAATATGGCGGCACCTGTGTGGACGGAGTTA ACTCCTACACCTGTCAGTGTGTGCCTGGCTTCATCGGAGACGACTGTGAG AATGGTATGAAACAGTTATTTGTGAATATGTTTTCCTGTCCACTGATACC CTTCTGTGAAGTTAAAATCTGTAAACNAAACAGTCAGCGGTGAGGATGCG TTTCTCTTGCTAATGATATCCCTGCACAGCAAAGCAACCTTTTACTGCCT TCTTTGAATATAACTCCTGTTCTGAAGCGAAGTTTACTGTAATGTCCAAC TGAAAAATTGATCTTACACAAATTTTCGACTGTCAGACTCCAGTCTTTGT CAGCGCTGTCCAAACTCCATCCCTTGACCAGTCCAGAATGTATCCTGATT AGGCTATGTCCATGACGCCAATATTCAGCCAATCAAATCGCTCGCTCGGC TATGACGTCATTTTACCGCCAGAGCTGGGTCACTCGATTTCAAGTGGATT TTCTTCTTCTATCCCCTATTATTCATAGGCTCGATTTGGAGAGTCTAAGG TTTGGGTAAGTCCAAATTTCGTTTGGGAAATTTAAGGTTTTTTGCTTCAG AATGGTTTCATCCAACGGAAACACGGATGAACTTTCAAGATCATAACTCC TGTTTTTTGTCCATATAGGGACTCCGCATAAAGAAGGGGAACTTGTCAAG AGTCGCCATCTTGATGAGGCCACGTCTAACTCTTCCTTCAGCAACTCTAG CTCACTGTTATGCTATTAGCAGACGTAGCAGTTATATATATGATGATAAA AAGGCTTGAATATTNACGGCAACTACGACCTGAACGCGGACTTCTGTACG GAACAGTACAACTACGTCTGCGAATCCGGTGAGTTAAGTAATTTGAAATA AAGCAGATATCCACGTATCAAGATCATCTGTATCAAGACCAGTTGGAAGC ACCGTTGTTCTGTTAACTGTTAACAAACCTTACATGTTAATAAGCCGTAC ATGTAAAATACGGCTAATATCAGAGTTGCAAAAGCAACAATGCTGGCAAA CTGTACTTTTCAATCTTCTTTGGCAAACGTTTTCCGTTCTTTTACACGTT TAGGGTCGAAAAGCATAGTTTGAGCTACGTTATCATTAGTAAAGATACCT GATATATGTGACAAATTTCAGAGCAATCACTTCCCCGCTGTCTGTCTTAG AAATAATTTAGTGCATAGGGCCCGTTATCATGTAATGTATTGACCAAAAT ATGTCCTTTTCAGATGTCGTCACCTGCAAGCAAAATGTCTGCCTGAACGG GGGCAACTGCACCTCCTGCTTCAACGAGAGTTACGCTTACTGCGACTGCG CACCAGGCTTTGTAGGAGACCGCTGTGAGATCAGTAAGTGCCATCCCCAC ACATGTACACAACACTTGGTAGTAGATGACGCAAGGATCTTGGATAATGT CAATCATATCTCTTTTTTTCCAAATCAAAAGCTTCTGCTGAAACGTCAGA GGTGAGACAAGCTTGTCCTATTGTGACATCATGTTACCAATGCTGTTTTT GTCCTTGGTGCTGAACGAGAAGCCAGTTCTTGACGCTTGTCTATTTTTTA TCTATAGCGTAAACTTTCTCGATAAATATCTCGCCTTTACAGATATCGAC GAGTGCGCCTCGGATCCCTGTCAATATGGCGGCACCTGTGTGGACGGAGT TAACTCCTACACCTGTCAGTGTGTGCCTGGCTTCATCGGAGACGACTGTG AGAATGGTATGAAACAGTTATTTGTGAATATGTTTTCCTGTCCACTGATA CCCTTCTGTGAAGTTAAAATCTGTAAACCTGAGCAAAACTAATAATGTTC TTGTTTACTATGAGCTGGCGTACTATCGGCTATACAGATATAGATTTCAG AAGGTTAAGATACTAGGACAATCGTTGAAATTATTAAATGTAACTGTTAT CTGTTTCAGATGTTGATCTCTGCATCAACAACCCCTGCCCACCCAACTGG GGCTGCGATGACTTCGGCCACTACTTCATCTGCAACGGTGAGCGAAGAGA AAATGTTTCATATCATAGCTGAGTCTTAAATAGTGACAAAAACGGTCTGG GTCGTATTGTAAGACATGAGGTCATCAGTTGGCAATATCGCCTGAATGGG ACAAGTCGTTGACGCTTACAAATGGTGTAGGGCTGTTTTTACTGTTACAT CGATGAAGGTTAGACATCCAGATAATAAGATACGCTAAATATTGGATATC ATTTTGGAATGGAAGTCATATCCAGTTGCTTGGGTAACTGTTTTTGACGA ATCTTTACCGTTGTATTTCTCAGCACAGGGCGGCCACAGCAGCTGTTTAG CTGATACATGATACATTTAAGTCCAGGGATTTCAATTTACAATTTTCTCT GTGTTATTCTTCCCCAGGCTATGGACGCGCTGACCCGGGCCCGTACCGTT GTGATAGTTTCTCCTGTCCGTCCGGCTGGTCCTGTCAGGACGTGGGGCAG CTCTCCTTCATGTGTGGCGCACGCGTTTAG

Coding sequence (CDS) from alignment at Sc0000807:28248..34777+

>Blg00261.0 ID=Blg00261.0|Name=Blg00261.0|organism=Branchiostoma lanceolatum|type=CDS|length=1326bp|location=Sequence derived from alignment at Sc0000807:28248..34777+ (Branchiostoma lanceolatum)
ATGAGGTGTGCGCTTCTCCTTGGGGTTTTGGCTGTATCCTTGGTAGCTTG
TGAAGGTGAAGAAGCCTACCTGACTTCCCTCCAGGGATGGGCCTACTACA
AGGTTCGCGCGTCAGGCACGATGACGTCATCCAACATCAAGAGCACGTGT
GAAGCTGCTGGGTATGTCATGCCCTGTACCCATGAACCGACGTGTCAGTA
TATGCCCTCCACCTGTACAGACACAGGTCTGCTGGGCGTTGGATGTGGTT
CTGCCCCTATGGACGACATCTCACAGGTTCTGTGTGGAGACCATCCAGCA
CGATGCCCTGCAATGGAGGGCTTATTTACTTGTTTCACCACCAGGCGAGG
CGAGGCTGTCGGTGTCCAGCCGACCACCAGGCCAGGTGCTTGGCTCAGCG
GCGCAGACTTTAGTGATCAGCACGCCCTTTGCGCAACGGATTTAGTTGAC
GAGTGTACTTCGGATCCCTGTCAACATGGCGGGACGTGCGTCGACAAATA
CAGACACTACACCTGTCAATGTGTGCCTGGTTTCATCGGAGATAACTGTG
AGAATGTTCTGAACTCCGACAAATGCTTCCAGCTGTCAGTGGAGCCCAAA
ACACACCTTGCGGCCGAGGGACAATGCGCCACTCTTGGAGGAACTCTGGC
CGGGCTGAAAACCGTGGCTGAACAGGAGTTTCTAGCCAACGAGATCCGCC
TGGGGACGAACGTGTCCCACTGGATCGGTCTCAAGAACGGACCGGAACAG
TTCCTGTACACCGACTTCTCCACCATGAGCCCTCAACTGCGCTGGATGTA
CGGAAAGCCAGAGAACCTGTGTGCCCTGCTGGACAAGAACGGCAACTACG
ACCTGAACGCGGACTTCTGTACGGAACAGTACAACTACGTCTGCGAATCC
GATGTCGTCACCTGCAAGCAAAATGTCTGCCTGAACGGGGGCAACTGCAC
CTCCTGCTTCAACGAGAGTTACGCTTACTGCGACTGCGCACCAGGCTTTG
TAGGAGACCGCTGTGAGATCAATATCGACGAGTGCGCCTCGGATCCCTGT
CAATATGGCGGCACCTGTGTGGACGGAGTTAACTCCTACACCTGTCAGTG
TGTGCCTGGCTTCATCGGAGACGACTGTGAGAATGATGTTGATCTCTGCA
TCAACAACCCCTGCCCACCCAACTGGGGCTGCGATGACTTCGGCCACTAC
TTCATCTGCAACGGCTATGGACGCGCTGACCCGGGCCCGTACCGTTGTGA
TAGTTTCTCCTGTCCGTCCGGCTGGTCCTGTCAGGACGTGGGGCAGCTCT
CCTTCATGTGTGGCGCACGCGTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00261.0Blg00261.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00261.0-exon-Sc0000807-1570713199:28248..28322Blg00261.0-exon-Sc0000807-1570713199:28248..28322Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:28883..29266Blg00261.0-exon-Sc0000807-1570713199:28883..29266Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:29746..29862Blg00261.0-exon-Sc0000807-1570713199:29746..29862Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:30830..31054Blg00261.0-exon-Sc0000807-1570713199:30830..31054Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:31354..31473Blg00261.0-exon-Sc0000807-1570713199:31354..31473Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:31859..31978Blg00261.0-exon-Sc0000807-1570713199:31859..31978Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:32238..32351Blg00261.0-exon-Sc0000807-1570713199:32238..32351Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:34207..34284Blg00261.0-exon-Sc0000807-1570713199:34207..34284Branchiostoma lanceolatumexon
Blg00261.0-exon-Sc0000807-1570713199:34665..34777Blg00261.0-exon-Sc0000807-1570713199:34665..34777Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000807genomeSc0000807:28248..34777 +
Properties
Property NameValue
GeneIDBlg00261