Blg00253.0 (mRNA) - B. lanceolatum

Overview
NameBlg00253.0
Unique NameBlg00253.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000151:492333..498460-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00253.0 ID=Blg00253.0|Name=Blg00253.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6128bp|location=Sequence derived from alignment at Sc0000151:492333..498460- (Branchiostoma lanceolatum)
ATGCCCAGATCCGGCCCTCTGCGAAAGAGTGCTGGCTTTCTCCTACGAGG CGACGGAACGCACTGGCACTACCACCACGGTAGAGGAATTCATGCATGTA GGGTAGGTGTACCACAATTCGTAGTCAATCTTCATTTGGTCAAAGCAAAT GCCAACTTTCCTGCAGAGGTGTTGTACGGCGAACTCTCCAGAGGACGGTG GAAGGGCAAGAGAAGCGGTTTAAGGACCAACTGAAGACAAATCTGAAGGA GTACTCAACGGGATAGTGGTATTGTGATGGTTTTTATTACATAAAACCAT CACAACACCAATATCCCGACTACTTTGTTTATCCAGGTTCCAATGCTACT ATACTTTTCAGTACTAGATAACAGGGATATCTAATCAAGTCAAAATTTTC AAATGTCTCTACTAAAAAAAGGGTTGTCAAGTAAAGCGTTATCAAATGCA AATTACTACAACGGTGTGCATAGTCGATAATTGCAGAGACACAAACAAGT AGGTTTTGAGATGCTTTTTTAGCGCAAACAATGCTATTAGTCAAAGCTCC CCACTCTTGGCAAAATCATGTACAAGTAGTACATATTAGGATTTAGATAC AGTAAAATCGCTTACGTGTGGTATCGTTTTTTTTAATGACTTGTGATTGC TCTTGCGGATGTATAGCACTAACTGTTTTACTAACTTCATTTTTCGATTT TATTATTTTATAGCTGCAGGAAACACGGGAGGCAGTGATAAAGAGACGGA GGAAGAGAAGGCCCTGTGGTTTGGGGTTACAGTGGACTTCATGTCGGACG AAGAGAACGGGGAAGAAGACGGGAAACCACTGTGGCTGGTGAAGCCTGTG GCCTTTAGAAGTGCGGAGCTCTTCGCAGCGTTGTGCAGGCAAAGCTGGAG GCTGGGAGAAAATACCGGGCAACACACACGGCTCGTGTTAGAAAGGACGG TGTGTTCAGCGAGAGATTTCCCCCCCCCCACCCCTTCCCACCACCCCCCA AACAGCCTACGACCACAACCTAGCCACATTGCACTTCACATCCGACAACG TTCCAAGACCGAAAAACCCCATCGGCCTTTTCAAAATCAGTATTAGAACG TCCACCCCGCACGACAGGCAGACAGCCCCAGGAAGACAGAGTTTAGTATT CCAAGATAGTATTGACTTCGGTGCCCTCGAGGTCTTCAATGGAGCTAGTT TTGTAGAATGGGGTCTTTGATGACACTAGCTATTATCTGACTGAACTGTA GGGGTATTGTTTCAATTTGCTGTATAGTGTTCACCAATAGCGAGTTATTT GTAGCCATTGCATTTTGTACTAATCTCAGGACTGTTCATTTTCATGTATT TCTTTATAGGTTTTTGCTTTTTGTATTCACATAGGGTTTTTACTTTTTGT ATTTATGTCAGCGTTTGAAGATGTTCGCTGTCTATCATTCAGGAATAATT TTACAAAGACCACGTGTATGTAAATATGGTATGTGCTTTGTTCGGGCAGT TTTATTCATTTTTTTGATTTTATTAATGTCATCTTTTCCTTTTGTTTATT TGAGGACTATAGTCTTTTTAGTTATTCAGTTTCTGTTAAAAGGTGTGCCA ACCTGGTTTAAGAAAACACGAATAGAGATTCTAGTGTATTCTAAAAAAAG TCTTCATAGTATTTCTTTGTGGTTAAGGTGTGCCAGTATGATGAAAATAA TGTATTTCCCAGTGGTTTTACAACATGCACCATGATTACTTGCCTTAGCC CAATAAAATGCCGGCAAGTATGAAAAAGGCAGAAAAGATCATCAAAGACC TCCTTCTTCCGACAAAAGAATACCACGTCTGTCAGAANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTT TATGTCAGTGAAAGTTTTGTTCATTTTCGAATTCAATAGCATTGTAGTCT TTTGAGTTGTTTAGTGTCTGTTTTTATGTTAGGGTAGTATGCTTTGGTAT GATGTTAGTAACAAGTAATGTACCTCTGCTTGTAATTGCTGCTTATTTCT GTTAAAATGTGTGCCAACCTGGTTTAAGAAAACACGAATAAAGATTCTAA TGTATTCTAAAAAAAGTCTTCATAGTATTTCTTTGTGGTTAAGGTGTGCC AGTATGATGAAAATAATGTATTTCCCAGTGGTTTTACAACATGCACCATG ATTACTTGCCTTAGCCCAATAAAATGCCGGCAAGTATGAAAAAGGCAGAA AAGATCATCAAAGACCTCCTTCTTCCGACAAAAGAATACCACGTCTGTCA GAACGACTGTATGGTCCTCAGCGAGGAGCACGCGGATCTGTCCCACTGCC CGGTGTGTGGATCTTCGAGGTACAAGGATGGTGGACGGGTTCCCCGGATA AAGTTCACCTACCTACCGCTCATCCCGCTGCTACGACAAGTAAGTTGCTA CATTTCATGAGTTATGTGTCCGTCTAATTTCAAATTCTGTTTTAAAGATC ATTTGTATAAGCAAGAACATTACATAGATCTCGATTTTGAACTGTATTTG AGCTGTATCATGATTTCAACTTGATGTTGAAAACACCTAACACACACTTT CTAATTTATTATAATTTAGTTATTTACTAATTCTTTATCTTGCTTACGAC AGACGTTCGAGATACCGGGAGTCGCAAAGGCACTGCAGTCCCACTGGCCT CGACCGAGAGCAGATGACGGCGTCATGCGGGACATCCATGATTTGCCAGC CTGGGCTGAGGCTTATGAGCCTGGCGGTAAGTTTCAAGATGAGCCTTATT GTCTCCAATTTGAATTTTCAGCAGATGGACTAAATCCGTTTAATCTCCTC AGGTCATCGTACTCGATGTGGCCGGGGTCTGTGAAGATTCTTGCCACCCA CTCAGCGATCCAAAGTCGCGCATTTGAAACCGGTGATGTTGATTCCAGGT AGGTGCATATTGATTAACTCACACAGAGCTCTAATATAAGATTGTTTTAC CATCATACGTCCATTTCTCCTATAACTGAATTAAGTGATTTCAAACGGAC TCCAGGATGAATTGTGTATGAATAACCACTAATGGAGATCCTAATAAAGC AAACAAACAAAACGGATCCCTTCCCTCCAAACTGTGTCAAATGCCTTTCT AAAATCTATGAAACATGAATAAAAGCATTTATTTTATAGAAATATTTAGT AATTAGCGAGTCTAAGGCAAAGAGATTGTCGTTTGTGCTGAAGTGTTGAA GCAATAATCACAATGATGTGTGGATAGGTCCCAACTAGCCGGGGATTATG ACCCCCTACCTACGGCCCTTTGTGAACGAAATACTGATGCTGGAGAAAGA AGTTCTCATCTACGACGCCTCCAGAGAACGCAACATCAACGTCCGAGCGA CATAATGCTGCATGTTATGGAGTATCCAGGCATGTGTAACGTCGGGAAAT TTAAAAATGTAGGGGCCATCAACGGATTCAAAAATTGTTGGCTTCCGGGT AAGATTTATTTCAATCCAACTTGATATGTATCTTTTTTTTAATGCAACAC TGTAGACACTGTTTGTAAATGTGACGTAGCAACAGTCAAATTTCATTCAC ATACCAATAGTGTTTCTGATTTGGCACTCAAGAACTAAGCTACCGTTTGT GCTGTCTTAAGGAACGTATTCAAAGTCGCTACGAAAGGTCGACTATGTTG GTCATCGGATGTGATGCTGCCAGTCACTTGAGTTCCCAGAGGCAACACCG GAAACCCGCGGCCGTCTACCCATGAAGACCAAAGACGAAATGTTGGGGTA TGGAAAGATCTATGACAAGTTGTCAACGCCTGCCCTCAGGAGCCTCATCG CCAAGGCTACTGGCAAAACCAGTGTAGAGGAGCTCTACAGACTGGAGTCA CATACGCCAGAGAAGTACGCCCCGGAGTCAATGCATCTTGCAGGGGTGAG ACTTCTTCTTTTGTAAAGTGAAAAAAAGGTAAATGGATAACTGTTGATAT GGTTAAAAACTCAAAGGACAGACACTTGAGTATTCATTGCGCCCATACTT TGTTACTTGTCTTATAGGATGCCACCTGTAGATTTCGTGGGATGGTGAGT GGGGACACAGACACATTGAAAGTGCGAAAAGCCGAGCAGCAACTCAAGAG GTTCCCGAGCACCTGGCCTATCAACTCCGCGACAGCAAAGATACGACGAA AGTTGGTAAGAAGACAACCAACTAAAACAAGAAGAAGAAAGTGATCTGCG GACCCGTTAGCCGTGTAGCTGATTCGTGAACAAGGTGATATATCTTTTTC CTGGATTGTCTTTAACTTAATCTTTTTTTAACAAAACATACATTTCAAAC ATGTTTCTGAATTAATCAGATGATATGGAACACTCTCCCTTACTTTCGCC AGACCGAAGCTGCACACTGCCCCATGGGCACTGAAGCCAGCAGAGAAGAC AAAGGCTGACAACCGCCTGGCCAGCATCAAAGTCCTACTTGACCTTGGGT GGAACTCCAAACGGATTTTTGCGAAGTTCAGCTACATGAAGAGTCACGAT TAAAAAGAGGTTAATTCGTTGATTAGCTGGGTACATTTTGACGATTAACG AGACTTGTGCTAAATAGACGTCACTCGAGCAATTGGATATTATTTTCAAA ACTTATGAAAATGCTTATAATCTTATTTCATTTTTACAGTTCGCAACGGA TGCCGTGCACGGCCTATTGGGTGAGTATCAGCGGAAGACATTGGGCAAAC TCTACGACGTCTTTGGAGCGCTAACCCATCCCACCGACAAGAAGCTTTCA CATATCCATTGGCATCGGCCTTGGAATCGCTCCTGGTAAGTTTTCATAAT GATTTTGATAGTTTTCTCCTTTCTCGTACATGTACCAAGAGCTAACCGTG TCTACTATATATATATTAATCCCTTAACTAAACCTGTTTACATATTTTTG TTTTACAGTTAGCTGAGTTCTGCCAAGCAATGGTTTTTTCCCCAACATGT TGCCGAAGTAACCATTCCTACCACCATGCCGGGCAACACATTGTGAGGAC CTCAGCTAGTCACCCCGTCCTTCGTCCTGACAGGGAAAAAATGGAAATGC GAACCTTTCGAGATGTCGCAGCCACTGCATGAGGGCCTGGCCAAGTACCG CCTAGCCACCAACTCCACGTACACCGCGCTACTCAGGTAAAGTCTTGCTT GAGTATGTGTGGATGGATATTTCACCATTTTATTGTTGACAAGTTACTTC AAATGGAACCTCCTTATTTTATGAACCCAAACAAATATACTAGTGTGGGA AAAGTTCATTATTTCGTGTATTAACAAAATGTTCATATTCTACAGCGAGT TGCATGGACCATCCATAGAATGGGGGCCCCGATCATTTTTCCCAACTACA GGAATGCTGACACTTATCAACAAAAGCTTATTTTTGTCTAGATCACTACA GACAGAAAGGACGATGTCTGGAAGCTGGCTACCACTGAAGTCCTGGCGGC CCCAAAGAACACTGTCTGACAGATAACAGGGGGTATTGGAGGGATCGTCA AGTTCCTGCACCAAGTACTTCGTCGCCAGGAGGATCGTCTACGGCAGAAC AACCGAATATAGGTAAGGCTATGAAATGGTGGAAAAGCCGAAATCTATCA ACACGCAAATGATACGCCACCCACTTGCTATGTTCATTGTCACCACAGGG TGCTCTGTGGAAAACAAAAGGCTGCCTTAGAAAAGTATGACTAAGTGCTA GCTTATATAGGTCAACTTCAATTGCTGCACTGTTGGTTTATTCGTTCTCA ACACGCAAAGCTAGATGGATTCATTCAATCATCCAGTCATTCATTAATCC ATCCATGTAATGTTGAAAGCATGTGTTTTCTTTATTGCGTCTTTAGTTTT GGTGTCACCTTACCCCTTTTAGCCAATTAAGTTCTATGTTTTGTTTTACA GATGCGAGGAAGTAAGTAGCCGTAGGTGCTCCTCCTATGTTGGGAAGAAC TTGGAGGGATTTGGCCCATGCTTTGCTAGTGTCCAGTTCTTCGCCGTCAT CGATTCCTGTGCGTCGAAATGGACATGA

Coding sequence (CDS) from alignment at Sc0000151:492333..498460-

>Blg00253.0 ID=Blg00253.0|Name=Blg00253.0|organism=Branchiostoma lanceolatum|type=CDS|length=1287bp|location=Sequence derived from alignment at Sc0000151:492333..498460- (Branchiostoma lanceolatum)
ATGCCCAGATCCGGCCCTCTGCGAAAGAGTGCTGGCTTTCTCCTACGAGG
CGACGGAACGCACTGGCACTACCACCACGGTAGAGGAATTCATGCATCTG
CAGGAAACACGGGAGGCAGTGATAAAGAGACGGAGGAAGAGAAGGCCCTG
TGGTTTGGGGTTACAGTGGACTTCATGTCGGACGAAGAGAACGGGGAAGA
AGACGGGAAACCACTGTGGCTGGTGAAGCCTGTGGCCTTTAGAAGTGCGG
AGCTCTTCGCAGCGTTGTGCAGGCAAAGCTGGAGGCTGGGAGAAAATACC
GGGCAACACACACGGCTCGTGTTAGAAAGGACGCCCAATAAAATGCCGGC
AAGTATGAAAAAGGCAGAAAAGATCATCAAAGACCTCCTTCTTCCGACAA
AAGAATACCACGTCTGTCAGAACGACTGTATGGTCCTCAGCGAGGAGCAC
GCGGATCTGTCCCACTGCCCGGTGTGTGGATCTTCGAGGTACAAGGATGG
TGGACGGGTTCCCCGGATAAAGTTCACCTACCTACCGCTCATCCCGCTGC
TACGACAAACGTTCGAGATACCGGGAGTCGCAAAGGCACTGCAGTCCCAC
TGGCCTCGACCGAGAGCAGATGACGGCGTCATGCGGGACATCCATGATTT
GCCAGCCTGGGCTGAGGCTTATGAGCCTGGCGAGGCAACACCGGAAACCC
GCGGCCGTCTACCCATGAAGACCAAAGACGAAATGTTGGGGTATGGAAAG
ATCTATGACAAGTTGTCAACGCCTGCCCTCAGGAGCCTCATCGCCAAGGC
TACTGGCAAAACCAGTGTAGAGGAGCTCTACAGACTGGAGTCACATACGC
CAGAGAAGTACGCCCCGGAGTCAATGCATCTTGCAGGGGATGCCACCTGT
AGATTTCGTGGGATGGTGAGTGGGGACACAGACACATTGAAAGTGCGAAA
AGCCGAGCAGCAACTCAAGAGGTTCCCGAGCACCTGGCCTATCAACTCCG
CGACAGCAAAGATACGACGAAAGTTGTTCGCAACGGATGCCGTGCACGGC
CTATTGGGGAAAAAATGGAAATGCGAACCTTTCGAGATGTCGCAGCCACT
GCATGAGGGCCTGGCCAAGTACCGCCTAGCCACCAACTCCACGTACACCG
CGCTACTCAGATGCGAGGAAGTAAGTAGCCGTAGGTGCTCCTCCTATGTT
GGGAAGAACTTGGAGGGATTTGGCCCATGCTTTGCTAGTGTCCAGTTCTT
CGCCGTCATCGATTCCTGTGCGTCGAAATGGACATGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00253.0-exon-Sc0000151-1570713199:498364..498460Blg00253.0-exon-Sc0000151-1570713199:498364..498460Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:497512..497747Blg00253.0-exon-Sc0000151-1570713199:497512..497747Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:495972..496196Blg00253.0-exon-Sc0000151-1570713199:495972..496196Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:495635..495758Blg00253.0-exon-Sc0000151-1570713199:495635..495758Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:494466..494671Blg00253.0-exon-Sc0000151-1570713199:494466..494671Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:494206..494343Blg00253.0-exon-Sc0000151-1570713199:494206..494343Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:493691..493721Blg00253.0-exon-Sc0000151-1570713199:493691..493721Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:493225..493327Blg00253.0-exon-Sc0000151-1570713199:493225..493327Branchiostoma lanceolatumexon
Blg00253.0-exon-Sc0000151-1570713199:492333..492459Blg00253.0-exon-Sc0000151-1570713199:492333..492459Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00253.0Blg00253.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000151genomeSc0000151:492333..498460 -
Properties
Property NameValue
GeneIDBlg00253