Blg00203.1 (mRNA) - B. lanceolatum

Overview
NameBlg00203.1
Unique NameBlg00203.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:5953..12801+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00203.1 ID=Blg00203.1|Name=Blg00203.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6849bp|location=Sequence derived from alignment at Sc0000026:5953..12801+ (Branchiostoma lanceolatum)
CTCGTGACGACCGGACCTCGCGCTACCACAGGTCACCTGTTCCCCCACAT ACAGCCATTTGTAGCTGAAAGCACCTGTTGTTTTTTTACAGACACCTGCA GGGACTCTGAATTGAACATGTGGGGCCACGGTCACGGTCATGGGCACGGT CATGGACATGGCGCAGCCAGGGAGGCCAACAGGGCCCACAGGGTGAGAGT CTAACCAGCTGTTTCACCATTTAGTTATGATTTCCTCATAACTAATAGAC CCTGATACAGTCTTATTTGGTATGATATGATCAATGTCTTGGGTTATGTA TTGTGTCGGAGTCGCTGGCCTACTTTGGTTGACTCATAAGTTGTTTACGT CGTTTTTTGTATGATATGATCAGTGTCTTGGGTTCGGTACTGTAGCGGAG TCGCTAGCCTAGTTAGGTTGACTCAAAAGTTTTTTACGTCGTTTTTGGAC AGACAAGGACGACGTGGCACTGCACTCAAGTTTTGTATAACATATTTCAA CAGTGCCACGTACAGAGAACAGTATACACATTTCTACACCTGGGTGGAGT GAGGAAAGTCGTGTTAAGTGCATTTCCCAAGGGCACAATATCTGTGGCGT CAGGGGATTCGAACCCGGGACCGCTTGGTTCTGGGCCGCGAAGACCCTAC CGTTACGCTACACGACGCCACAGACTCATAGGTTATGTTGGGGGAAAGTA AGAAACACAATTCTTCTGGCTAGCTACTGTTGCTGACCATGCAGAACACA ATAGAGTATCAGATGTTTCAAACAAAACAACCCAAAGAAGCAGCCAAAAT GTGTAGAGCGACAGCACAAAAATGATAGTAGAAATGTCCACGTTGACGTG ATGATTATAACTAACGTCAACATTATAAGTCATCACATCAACATTAAATC GTCTGAATTAAGGAATAGACTTGAACAATTGAACGCACAGTCAAGAGAAC GGCAGAGATCAGTCTACTAGAATTACATCGACTAGGACAAGGCAAAGTTC AGTTTGATAAAAATAGAACAACATCTATACTTTACTCGGTATGCCTCGGC AGTCGACTACAAAACTGATACTGCACGGCCGTATCAGCGTTAAAACAATG GACTGGTGTTATAATAATCATAAATGACTTTATTGCACAACAATTGTACA AGGTACAAAGTTCTATGAGGCTAATCTACCTAATTCAAGAGTGAATAGTA TCGGATCGATCATGAGCTTTTACAATCATTGGAAGAATTTCTAACGTCTA GATATTCTTTGATATATTTTCCTATGTGTACCATGCAGGGGTTGTTGCAT GTCATATGTGTTCACTGCGATGTTTACACAATACTGTAGTGTATCCGGTA GGGGAATGCATGCCATAGCTGGAGAGTTCCTTAATCTGGCCCGTTCTCAG GTTTTCTCCAATCTAAGGAACTGTAGCTGCTGAAATATAACAATGAACTG GTTCCTATAAGTATATCGCTTAATTCCATTATGTAAACTACAATATACTT ATGAAACTGCAGCTGATAATCTTGAACAAACCTCATTGATCTTGGATCTA TGGATAGTTTGGGATACAATGAATGCTACCCTCTAGTGAATATTGACGAG TGCACGGTCTAAAGTACATGTGCATGCGTCCCCCTCCCCATCATTCTTTC AAAGGGGAGGGGCCAGGTTTTAAGACCAGGTGCGCCAGAGTCAACACACC TGCGTAGTTTATGTCTTGGTGTTGTTTGGAACTTTGAACGCGCGACTGTG CGTAGGTTGGACATGCATTGTGGTCTCGGAGGGCGGAAGTGGCTTAACGT TAGCTACTAGCGGCTCTGTACAAAATTGCAATTGCATATTCTATTCAGTA TGCTTTGCGATAAAAGGCCTTGTCGTCGGGGCCTTGTCGTCGGGACAAGT GGGTAATAAGTTTTCGGCCCGGGAACAACCTTGGGCCTAGGCAAGCGGGA ACAAATCTAAATACACACCAAGACAAACAAACAAACAAACAAACAAACAA ACAGACAGACAGACAGACAGACAGACCGGAAACAATACAGTACATCCGTT TTCACGGAGATAAAAATACATCCGTTTTCACGACAAAATATAGGGTTTGT TTGTCTTGGTGTGTGTTTAGGTTTGTTCCCGCTAGCCCAGGTCCAAGGTT GTTCCCGGGCTGAAAAAGATTTATTCCAACGACGTTCCCCATTGCATTTA GGAATGCACCTCATGTATAAGCAGCGACACCTGTGCTGCATTACTATGTG AACCAGTCAGAATTGCCTTGAAGAAGGTGACAGAATGAGATGGTCACCGA ATTGTCGGTGGAATAAATCTCTTGGTTGTGTAAAAAGAGTCTTTTTATCC TGGACATACCTATGTTATGTTTTGCCAAGGAACTTACAAAAACTCTTAAT ATTTCCTGGAGGTATGAGATTTCTACGGACTGGCTGTAGATTCTAGCCGG CTGGCTACGATTTTGCCTCCGTGGATATCTGCTTGGAGATCACAAGAGTT GAGCATGTAATGTGAGAACTGGACATAGGTATGAGATTTATATAGCTAGA TGTTGTTATATATTTTTTACAGGAAGAGATGAAGGCAGAACGTCAGGAGC ACAGAATGCACAACAAGGCTGCGCACGCGGCCGCACACGGCAACTTTGTC AAGGCGGCCATGTTTGAGGTAAGGAAACAAGTGCTTTTCAAAAAAGCTGG CGTTTTGGCTACCTTTATGAGTGTGAATTGTCTTTTCCCTTTTCTTGAAG TAAAATCTGCCAGAGAAAGTCACTCAAGGGCTGTTGAGTCTATAAGAAAA ATTGTCATTTTGGGAAAGGAGTACTGTTTTAATAGAGAAAGGCAGATTGG GGAAAGCAATTTTGAAGTTACGGCACTTAACTTAAGTGCTTTTGAAAAAG CTGGTCTTGGCCTACAACTTGTACTTATTTCTAAAATGTACAATAGGCTC ATTATAAAAGCTATCAATGTAATTATGTACATAGCACGCAATAAAACATA CAATTTGAAAAAACACCATTGAATCATCAGCACTATGGTAATTAAGTGAA ATAGAAGTTCATAACAGCTAAGGTTCTATCTAAAATGACTACCAAATGTC AAACAAATGTTCAAACCAATTAACAGCTTCCTCATCCCTATCATTAATAT CAATTATTATTATTTATTGATCATAAACTTATTATTATTATTATTGTTAT CATTATCATTATTATTATTATCATTATTAGGGTTTTCGCATTTACAACAT TTCTTCCTTATTTTCCTGGATAATTTTGCTAAAATTCATGAAAATTCCTA TATTTTTGGGCCGAGCGGCGTCACTTTCCACGTCCGTGTTGTCTGAATGA AGTCGATACTGAACAATGGAGCATTTGCTACTGTAACAAAGGATCGCTGT TTTGCAAACAACATCAAGAGCCTCTGTTTACATCGGGGATAGAAGTTTAG TGGCGAGTGTTTTACAAGAATCATCTTACCGCGCATAGGAGCCGCTGCAC GGTATTTTCCATTACAATGAACAGAAAAATTCGAATGCCGGGTTTGGAAT CTATGAAGTCCTGTTCATAAGACAAAGGCCTTGTATATATTAAATGAATA TTTAAAAATAACAAATATAAAATATTTCTTTATTTATTAATGAAAAAAAN AACAAATATAAAATATTTATTTATTTATTAATAAAAAAATAGAAATATGA TATTCATAAATATGATATTGATAGATTTATATAATATTGATATATATTTT TGATATTTTATATCTAAAAAGAAAGAAAAAAACATGCACGGACTCGATCC CGGATCGTCCGGATCTAAAGCACTACGACGTTCCCAGCTGAGCTAAGATG TAGTGTGTAATACTAATATGTGGCTCAGTACATAATGCTTTAACCTCACT ACATGGTATAATTTATGTCGATTTTTGGTCGTTTTCTTGATGTAATTATT ATTTTTTTTCTGCAATCTTGTGGTATAGATGTGATATGGTCATTTTTCAG GATATCAAAGTCCGAAACCACAATGCAATGATATTTCCGAACAGTTGTAG CAGTTACATGCGGTCGCCCTCCTATGTGTCATGCAAATCAAGCCTGCCTG GTTTTTCTTGCTCCCTTGCCATATAAGGCAACGGCTTTACAAGAATTTTA GAAGGTATTGCCATATAAGGTCTTATGGTGTGCGACACAGTGTTGAAGCT TCCTGCATGCATGGAATGTAAGAGCGAAGACATTGCGTTTCGGCGCGAAG CAAAACGTAGAATAAGAAATGCGCAACAAAAGGACAAAAAAATCGGGCTA TCAATACTGGCAAATACTTCAATATATGTTACACAGCGGCTTGCAGATAG CATAACTGATTCTCAAAAGTCAACAACTATAGAAAGTCAACAATAACACT TTTGAGCACACATCTTGTCGACACATGTATCAACATCAAGATTGGACAAT CTAAAATGTCTTCATTTTATTTGCATATAAATTCATAGTTGGTTAGTGGT CCAAAACCTGCTGTTCGACAAAGTGTTATATTTGTTGAGAAAAAAAAGCT TTAATAAGGGGCCAGGGCAATCTAATTGAATTGATGATTATGTTTGCAAA CTATATGTATATATATACATATATCTCACTTTACTCACCACACGACTTTC ATAACGTTTTAAGGATGTATAATATATGTATCAACACCACTTACGTTGAT GAAGGTTAGACATCCAGGTAATATTGATAAGTTACTTCAGTGACGAAAGA TAGTGGATGCTGTCTGAAACGTCTCTGACTGTTTCAAAATCTTATCCAGT TGCTTGAGTAACTATTTTTGGCGTATCAACAACACTTGTTCTAAAACACA TGCTCTGTCCCTCTCCGTTGCAGGTGGCGGCTGCCGGAGCGCATAACCGT GCGGAGAACGCCCACCACCGCGAGGTTCACGCTGCGCACGCGGCGATGCA CCACGGGCCGCACGGCCACCACCACCATGGGCCCGCCGCCTGCCCGCCCC CACGAGCTCCTGCTGTGCACGTCCACGTGAGTTGGTCTTATTATCTAATA TCTCAAACTGTTGATATCGTGGATAGTTGTTAGGTCCTGTTACTTTTTAT ATATGTTTGGAACTGATAGAAGCTTCAGTGTGTTCCCAAGTAACACAAAC AATTAAAAAACCGCCCCTGCAGTTCCAGAGGAAGCTGCTAGAAGGCCCAA ACCTACACTACTTCTTTATTACATCACAAGCTATCTGCCACCCAGCAATC AAGACCACAACACGTCCAGGTCAAAATATACAAAAATTGAAGTTCTGCTG CAGTACCAAGGTCACATACCAGGGGGCCCAAAATCGACCTTGATTTTCGG CTTCACATCACCCGCCCACATACCAAATATCATCATAATCCATCAAGAGG CTCTTGAGTTATGCTGACTAGAGCAGTCCGGAAACACAAACAGACAATCA AACAGACAAACAGACAGACACACCCAAAACAATATCTCCATTTTTCATGG AGATAAATGTTGGATCTATATCTAATCACTGTCGTTTAGAGAAGAAGCTT TGAACGAAAACCTGATAGTCAAGCAATTGAAAAAGGATTACTTTTTGCCC TCAGCACACCTACGTGAACCCGACACCTCCCGTGAGTTATCCAACAGGTA CAGCAGCGCCCCCACCGGCGTACCCAGGAACTGCACCAGGTCAGTGCACT ACATCACGCTTTTGTCTTAAAATTCATGCCTGGATGAAATACATACTAGC CTGGAAATCTATCAATTTCTACACTGCCATCTAGATCGACTTTCCTTATT CGATCCGCGCTAATGATTACTAAAGCATATGGATTGATATGGGGTATACG GAACAGTGGTATGCCAAGTATCATAGTCGGTGGATTATGAATGAGTGGTT TATTATGATTATTATGATCAGCTAAGAAAAATACATCGCAGCCTCAGGCT GAATTGTGTATTTTGTACAAACATAACTTAAAACCAACTGTTGACGTCTA AGCAAGTCACAAATTGACATTCATACATTAACCATCTTAACTGTATAACA ATTCTAAAACCACAATTGATACAAAATTAAAACAGATAGATTTAGAACAG ATAAGCTTGGATTTAAAGTATTAATACGCAGTTACCAGTTGCAACAGCTA ACATATATTTAATTTTCTGTACGTGTAAATACTACAGTTACTGTTCATTT AAAAGATTTGTCGTATAGGGAAGAGGACTGTCCGTATATCTGTTTGTTCT TCTTCTGATAGCTGACAGAAAGTGTTTGTTATCAAGCTACTGAAAGCTGT TAAACATTTATTTTCTTTCTTTACTGTCCAGGGTACCCGCCGACTACCGG ATCCGCGTACCCCCCAGCCCAGCCCGCGGGATACCCCCCTGCCCAGCCCG CAGGATACCCCCCTGCCCAGCCCGCGGGATACCCCCCCGCCCAACCTGCA GGATACCCCCCTGCGTACCCCCCTGCACCGGGCTACCCCAACCCTTCCTA CCCTGGATACCCGCCAAACTAGTGAACCGGGCCGAGTACCAAGCAGATGT CTGCTAGAGGAAATCGCCACATCTCTCTCGTGTTTATACTTGTTTGTGAT CGTCCTTTCCATAATTGTGTGGATACAATACAAAACATACAATAGGGAGG CGTAACGATTTCTCTCTCACTGACGTCGAGTTTTCAATCTCTAAAGTTTG AAAAAGTTCCCTAAAAATTGCCAGTATGCAAGTTAAAGGGCATCACAGAG TCAATGCATCATGAGGAAGAGACGGCCGGCCGTTGGAGTATCTTCTTTTG TAATAAAAGGGATATTGATTAAATGACATGATGAAGTGGACTATCATTG

Coding sequence (CDS) from alignment at Sc0000026:5953..12801+

>Blg00203.1 ID=Blg00203.1|Name=Blg00203.1|organism=Branchiostoma lanceolatum|type=CDS|length=600bp|location=Sequence derived from alignment at Sc0000026:5953..12801+ (Branchiostoma lanceolatum)
ATGTGGGGCCACGGTCACGGTCATGGGCACGGTCATGGACATGGCGCAGC
CAGGGAGGCCAACAGGGCCCACAGGGAAGAGATGAAGGCAGAACGTCAGG
AGCACAGAATGCACAACAAGGCTGCGCACGCGGCCGCACACGGCAACTTT
GTCAAGGCGGCCATGTTTGAGGTGGCGGCTGCCGGAGCGCATAACCGTGC
GGAGAACGCCCACCACCGCGAGGTTCACGCTGCGCACGCGGCGATGCACC
ACGGGCCGCACGGCCACCACCACCATGGGCCCGCCGCCTGCCCGCCCCCA
CGAGCTCCTGCTGTGCACGTCCACCACACCTACGTGAACCCGACACCTCC
CGTGAGTTATCCAACAGGTACAGCAGCGCCCCCACCGGCGTACCCAGGAA
CTGCACCAGGGTACCCGCCGACTACCGGATCCGCGTACCCCCCAGCCCAG
CCCGCGGGATACCCCCCTGCCCAGCCCGCAGGATACCCCCCTGCCCAGCC
CGCGGGATACCCCCCCGCCCAACCTGCAGGATACCCCCCTGCGTACCCCC
CTGCACCGGGCTACCCCAACCCTTCCTACCCTGGATACCCGCCAAACTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00203.1Blg00203.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00203.1-exon-Sc0000026-1570713199:5953..6144Blg00203.1-exon-Sc0000026-1570713199:5953..6144Branchiostoma lanceolatumexon
Blg00203.1-exon-Sc0000026-1570713199:8525..8620Blg00203.1-exon-Sc0000026-1570713199:8525..8620Branchiostoma lanceolatumexon
Blg00203.1-exon-Sc0000026-1570713199:10826..10978Blg00203.1-exon-Sc0000026-1570713199:10826..10978Branchiostoma lanceolatumexon
Blg00203.1-exon-Sc0000026-1570713199:11557..11641Blg00203.1-exon-Sc0000026-1570713199:11557..11641Branchiostoma lanceolatumexon
Blg00203.1-exon-Sc0000026-1570713199:12284..12801Blg00203.1-exon-Sc0000026-1570713199:12284..12801Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:5953..12801 +
Properties
Property NameValue
GeneIDBlg00203