Blg00196.1 (mRNA) - B. lanceolatum

Overview
NameBlg00196.1
Unique NameBlg00196.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:413769..419173-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00196.1 ID=Blg00196.1|Name=Blg00196.1|organism=Branchiostoma lanceolatum|type=mRNA|length=5405bp|location=Sequence derived from alignment at Sc0000026:413769..419173- (Branchiostoma lanceolatum)
CACAGACAAAACATGCACCGGAAAAACTATGTCTTCCCGCTGGTGGCCGT TGTTCTTCTCGCGGCTGTGCACCTCTGCTGGGCCGCCAGCTGTGTGAAGA CAGGTCCGTGCTCCTGTCAGATGGACGACGGCTCAGGGGTCATTGACCTC AGGCCTCTTGTCAACGGGAGCCCGACGTACGTATAGTCACTTTACGCCGA AAATTCTTTGTATCGCATAATCGCTTTGTACATATCTGGTTTGTACGTTA AGTACAAGCTGTTTAGGACCAGAATGATAGTTTTGAACCACTCACGATTT TATCGACGTATTTGGTGCCTGACGTCCAACAGGACGTCCCTAGCCGTCCG GATATACTCATCACGACTTGAGTGGAGTGAGGAAATGCGTGTTAAGTGCC TTTCCCAATGGCACAGCATCTGGACCTCCTAGGAGTTTAAACACAGGACA TGTAGATTCTGAGTTAACTAACGAAAACGCAAGGTAACACGATTCCACCC AAAACAATTTGCCCGCTCCATACCGACCGTGTCTGTGTTTGCGCTCCTTT TCCCTCTCCAGGTTCAAGGACATAAAAAGCTCCTATTTTCCTGACATCTG GGTCTACTCCTACAACCCATGTGTACCGTTCTCCGAAGGCTCCTGCAAAA ATGTATCTGTAAGTCTCCGCTTGCTAAATGTGGTGCTTTTATGCAATTTG TCAACCACGTCGCTGGACTTTTGGAAATGTGTTCTAATGTTGTTAGTTAC AAGAATATTCATCAATCAGTGACTTATAAAGGTAACGAGATACGCACCTC CAAATTTTTGATGTCTACTGTACATCTTGATCACGGAGTGACCTAGTCTC GCGAGAACACGAGACTAGGACGAGACTTGTGAAGATCGCCCAGTCCACAT CCAGTTGGAACGTGCTGGGATGAACCGTACCGAAGGTTGGGAGCTGCCCA AGTCCTACTTACCCCTGCTCCGCAAGGAGGAAGGACGAGCAAGGAGGCAG GACGATCTTCACAAGTCTCATCCTTAAGTCTCGTGTTCTCGCGAGACTAG GTCACTCCGTGATCAAGATGTACAGTAGACATCGAAAATTTGGAGGTGCG TATCTCGTTACCTTTTATAAGTCACTGATTGATGAATATTCTTGTAACTG TTATTATACGTGACTGATAAATCTCTTCAACGATAATGTTGTTAGGTTTG TGCCAAGGACAGACTAAACCAGCGGAAGTACGAGAGTTACGGCACGCAGG AGTCCGCGGTGTTCAGGTCTGACACGGGTGTAGGGCTCGTCCTGGGGTAC GTGGACTCGCCCTCGCTCAGGTCAGTCAACGTTTTGTCAGTTTATGAAAC AATCAGTTTATGAACGTATAAATATTACTTTGTTGCCTTTTTTTTCAGTT TGAATTAGTGCTGCGTATCCAAACGTAACATCAGCTGGTACAGGTACAGG TACCGGTACAGAGGTTTAGGTACAGGTCCGGACAATTTGAAAAATTAACA TGTGTTTCTCTGAACCTCTTCAACAATGACAGAAACATAAATAAACTGCT TTCAACTTGTCAGTATCTTTATTCAAAGAACATAACTAGCTAGGTTTCCT ACTACCAAACTCCCTTCATAACTCCCTGCCTGCCTGAACGATCTGTTGCA TATTAGTCACCCTGTTTCAAGGTGTCAATTTGGTCACGTTTGGTGTTGCA TGAGGCCATGAGGTCAGGAGATCGGTCACAAAATACGCACATACTTGGTG TAAATTTATATCGGAACAGTACCGGTACTTCATGATCCGGTATTTTGGAC CTGTACCTAATCAATTTTTACGTTACAGTACCGGTACGCAGCACTAGTTT GTACTCTCATCAAAGCGAGACCTCCCCTCACCCGAGAGGGCGTCCCTTAC CGACTCTAGGTACTCAGTCGGAAGTTTATTTGATTATTTACCATTATCAT TATCTATTTATCTATTTATTTGAGCTTCGTTACAAAAAGTAACTGGATTT GGGTGACAGAACCAGATCAGTCCTGTCCAATAGATTGTGAAGGATCGTCA TAACACTAACATCAACCTGTGAGAACACGATCATCTTGTCAACAGTTCAA ATTTTGGCACAACACTGGACAACACAAAGCACAACGCAATCGTACTGTAT ACCACACGTTCTTGCTAGCTAGAGTGTTAAGAAATATTCTAACGTGTAAT GTTACTGTTCTGTTCTGTCCATTGCAGTACGTGCTACTCGTGACTTGTCC ACACATAACGTATATGAAAACTGTTTACTACAGGGTAGTACGTGCTACTG GTGACTTTTCCACACATAACGTGAATGAAAACTGTTGACTACAGGGTAGT ACGTGCTACTGGTGACTTTTCCACACATAACGTGAATGAAAATTGGTGAC TACAGGGTAGTACGTGCTACTGGTGACTTTTCCACACATAACGTGAATGA AAATTGGTGACTACAGGGTAGTACGTGCTACTGGTGACTTTTCCACACAT AACGTGAATGAAAACTGTTGACTACAGGGTAGTACGTGCTACTGGTGACT TTTCCACACATAACGTGAATGGAAACTGTTGACTACAGGGTAGGCGCTGT AGAACTGTGGTGCGTGGAGAAGAACCAGCCACAAAACCTCACTGTTGTCG GACGACATCCCGAGTGGCCAAACACCATTGTAAGTGAATAGCTCTTTATT CACAACCGCATATTTACATGTGCCAACATTTATCAGCCCTCCTCTATCAG CGCTGAAACCCGCTCGGGAAATGTTCGGCAACCCCTCCCGGTCTCAGCCC TGATCTTTTGAACGGAGATTTTGGTTTCTGGGGGCGTCACTGACAGTTGT TCATAAATAATTAATGAGCTAGCCTTAATTGGTACAAACAGTCGTTAGTT GCTCATGAATAATTAAGTAGCCATGTAAGACGTTAGCTGATTGGCTGATA GCTTCCCAGCGTCCTTTGCGGCTTTGCTCGAGATGAGCTTTAGCAAACCC TCTGATTGGCTGAAAGCTGTTTAGTGGTGACGTCGCCAGAAGCGTGTTCA GGGGCTCGGAAGTGCAGGGCCGCTATGGAGGTAACGAACATATCGGGTCT GCTGGGAGGATGACATTTCGATGACCGTCGTTCATCTCCATCAGGGCAAT ACTGACTGATTTCACAGTGCACTGAAGCTAGGTGTTACTCAGCTAACAAT GCAGTCCAAAACGTAAAGTATTGTTACGATTGATATTGTTAAAGACCCAC TATGTAGTTTTAGGCCAATACAGAAAGTAGATTTTCCTACTGTTTCTTTG CATAGCAAGCTTTATCAACTCTATCGAATTGCTTACCGATATTCAGGAAG GGAGGTTACAACATTACTGCACCATACAAACAACTTTAAAAAACTGTTAT CCTCCATCCAAAACATCACACAGTGTGAGACTAACACATGGCCACACATG GCTTCTGTACTTCTTATCAGGCTGATCGCCCAGTGAGGTGCCTGTTTACA GTTCACCAGTTTCTGTAAAAATCATCCTTACCAGAGTTCTTGCAGTTTTG AAGGGAAAATAACCACACTTTATTGATACCCTTCAAAGTAGACTCTCTAG AATAAATTAATACTTGTATTCTACCCTCTTGGAGAAAGATATGAGTGTTT CCAAAGAAGAAGAGCTTCATGACATCTGGCAGTCTAAAGTGTGCCTAAGT GATTAGACCACCATTGGGGTCCTCCAGTGCACTGGGATGATGTTGTTTAT CTACTATTGAGGTGGTGTCCGGGAGTTTTTGTTTTGTTTTTGTACAGTTC ACAAACACCAAAAATAGATGAAATAATGAAGAAAATATGCTGAAAAGGGG TTGTACATGTCAGTACCTGCCATTAATATTAAGATTTGTTAACAAGAATA TTTTCAATTTTTGCGCCAAAATCCTACATATAGTGGGCCTTTAAGCAACA ATGGTGGCTCATGTGAATAAAGAACTTTGCTATTCAGTCATTCACCAACC TGATGAAATTATTCACGAAACCATTGTAAGTGTTCCATCATTACCTAGAA TATATATAGTTTTTGTCACTGAATGATCGTCTTGAGACTTTGCATGCTGA AAACTGAGTCGGTCGAACCGAGAAACGGACTTTGCAAAGAATACTTACCC TCTGGTGATTACTGAAAATCTTTGCCACGTTCAATGAATTCACAGACACG TGTGATTGTGAAGTTGTATGAATCATTTGTAGTTGTACGTCTCTAACATA TAGAGGAATAGCAGACAAACACTTTCTTTTTATCAGGAAACTTAGATTTT GAAAATGATCCTGTAGCAGTAGAATGTCCACTGCTAGCTGAGGAAAAATC TACACTACTGACAGGATGATGATTTTGCACTGCTGACAGGATCCTGTCAT TAGTCACTTCTATGTCAAAACATGTGCCCGGATCTAATCCAAATTCCAAT CTAACTATTTAGTCAGTATAAAGACACTAAATGATGACGTACAGCTGTGA ATCATTACCATTGATTTCACCCGATGATGTTTCCCTACAGATCATGGCCC TGTTCAGCCCCTGCTGCTGCCCGGGAGCAGGCCCAAACTGCGCAGACTCA GCAACTTTGTGAAACTCAGCAACTTTGTGAACAGGAGAGTCAGCATGAAC ACCCTGGATTTTCTACCATGGCCTGATTTCTGATTTATTTTGCCAAATCA TTCACATTTGAACACCCTGGATCTTCTACCATGGCCTGATTTCTGACTTA TTTTGCCAAATCATTCACATTTGTTTTCTAGGGATCGGGCAAAAGCAATA TCGCTTGCAATACATTACCACATGATTCTTGTTACAAATCAAGGGTGGCC CTCTTCTCTAATAGATACACATGAGAAGAAGATCAACAAAATAACAACTA GAGTTCCACGAACACATTATCTTCGCCAAATAATCCAGGCTTATTATGGA TAGTGATTGATATCTATTTACATGCTTTAATATCACCCCCTGAAAATTTG ATCATACACAATGCCGTTTGGAAGTTATGAGGGGGGAAGTCTAGATAGGG TTTAAATCATTTGGTGGTACAGGACTAGTATACAATGTAAGTGGTCATAA AAAAATCTGAGTATATTGATATCATATGGGCCCCTAAAGGTTTGAAATTG CAGTGTCGTAAGTTGAAAATGATGACGAAATGGTACAGTCAATATATATG AATAGACTAAATCGTTATTCTATATCATACACATTTTGAAAGACATTGAT AGTAAATGTGACTTTTCCGTACCTACATGTAGCAGTGGTGCAGTTTTGGG GCAGTGTACTCTCCAAGCAGAACAGTGTGTCCGGCTGGTTTTTGACGTGT TGTTAGGTGTTTTTGTTAGGCTTTCTATTTTGTCCCCTTTTCGCTATGAT ATCGG

Coding sequence (CDS) from alignment at Sc0000026:413769..419173-

>Blg00196.1 ID=Blg00196.1|Name=Blg00196.1|organism=Branchiostoma lanceolatum|type=CDS|length=441bp|location=Sequence derived from alignment at Sc0000026:413769..419173- (Branchiostoma lanceolatum)
ATGCACCGGAAAAACTATGTCTTCCCGCTGGTGGCCGTTGTTCTTCTCGC
GGCTGTGCACCTCTGCTGGGCCGCCAGCTGTGTGAAGACAGGTCCGTGCT
CCTGTCAGATGGACGACGGCTCAGGGGTCATTGACCTCAGGCCTCTTGTC
AACGGGAGCCCGACGTTCAAGGACATAAAAAGCTCCTATTTTCCTGACAT
CTGGGTCTACTCCTACAACCCATGTGTACCGTTCTCCGAAGGCTCCTGCA
AAAATGTATCTGTTTGTGCCAAGGACAGACTAAACCAGCGGAAGTACGAG
AGTTACGGCACGCAGGAGTCCGCGGTGTTCAGGTCTGACACGGGTGTAGG
GCTCGTCCTGGGGTACGTGGACTCGCCCTCGCTCAGGGTAGTACGTGCTA
CTGGTGACTTTTCCACACATAACGTGAATGGAAACTGTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00196.1Blg00196.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00196.1-exon-Sc0000026-1570713199:418998..419173Blg00196.1-exon-Sc0000026-1570713199:418998..419173Branchiostoma lanceolatumexon
Blg00196.1-exon-Sc0000026-1570713199:418516..418612Blg00196.1-exon-Sc0000026-1570713199:418516..418612Branchiostoma lanceolatumexon
Blg00196.1-exon-Sc0000026-1570713199:417854..417978Blg00196.1-exon-Sc0000026-1570713199:417854..417978Branchiostoma lanceolatumexon
Blg00196.1-exon-Sc0000026-1570713199:416495..416646Blg00196.1-exon-Sc0000026-1570713199:416495..416646Branchiostoma lanceolatumexon
Blg00196.1-exon-Sc0000026-1570713199:413769..414633Blg00196.1-exon-Sc0000026-1570713199:413769..414633Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:413769..419173 -
Properties
Property NameValue
GeneIDBlg00196