Blg00196.0 (mRNA) - B. lanceolatum

Overview
NameBlg00196.0
Unique NameBlg00196.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:413769..419161-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00196.0 ID=Blg00196.0|Name=Blg00196.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5393bp|location=Sequence derived from alignment at Sc0000026:413769..419161- (Branchiostoma lanceolatum)
ATGCACCGGAAAAACTATGTCTTCCCGCTGGTGGCCGTTGTTCTTCTCGC GGCTGTGCACCTCTGCTGGGCCGCCAGCTGTGTGAAGACAGGTCCGTGCT CCTGTCAGATGGACGACGGCTCAGGGGTCATTGACCTCAGGCCTCTTGTC AACGGGAGCCCGACGTACGTATAGTCACTTTACGCCGAAAATTCTTTGTA TCGCATAATCGCTTTGTACATATCTGGTTTGTACGTTAAGTACAAGCTGT TTAGGACCAGAATGATAGTTTTGAACCACTCACGATTTTATCGACGTATT TGGTGCCTGACGTCCAACAGGACGTCCCTAGCCGTCCGGATATACTCATC ACGACTTGAGTGGAGTGAGGAAATGCGTGTTAAGTGCCTTTCCCAATGGC ACAGCATCTGGACCTCCTAGGAGTTTAAACACAGGACATGTAGATTCTGA GTTAACTAACGAAAACGCAAGGTAACACGATTCCACCCAAAACAATTTGC CCGCTCCATACCGACCGTGTCTGTGTTTGCGCTCCTTTTCCCTCTCCAGG TTCAAGGACATAAAAAGCTCCTATTTTCCTGACATCTGGGTCTACTCCTA CAACCCATGTGTACCGTTCTCCGAAGGCTCCTGCAAAAATGTATCTGTAA GTCTCCGCTTGCTAAATGTGGTGCTTTTATGCAATTTGTCAACCACGTCG CTGGACTTTTGGAAATGTGTTCTAATGTTGTTAGTTACAAGAATATTCAT CAATCAGTGACTTATAAAGGTAACGAGATACGCACCTCCAAATTTTTGAT GTCTACTGTACATCTTGATCACGGAGTGACCTAGTCTCGCGAGAACACGA GACTAGGACGAGACTTGTGAAGATCGCCCAGTCCACATCCAGTTGGAACG TGCTGGGATGAACCGTACCGAAGGTTGGGAGCTGCCCAAGTCCTACTTAC CCCTGCTCCGCAAGGAGGAAGGACGAGCAAGGAGGCAGGACGATCTTCAC AAGTCTCATCCTTAAGTCTCGTGTTCTCGCGAGACTAGGTCACTCCGTGA TCAAGATGTACAGTAGACATCGAAAATTTGGAGGTGCGTATCTCGTTACC TTTTATAAGTCACTGATTGATGAATATTCTTGTAACTGTTATTATACGTG ACTGATAAATCTCTTCAACGATAATGTTGTTAGGTTTGTGCCAAGGACAG ACTAAACCAGCGGAAGTACGAGAGTTACGGCACGCAGGAGTCCGCGGTGT TCAGGTCTGACACGGGTGTAGGGCTCGTCCTGGGGTACGTGGACTCGCCC TCGCTCAGGTCAGTCAACGTTTTGTCAGTTTATGAAACAATCAGTTTATG AACGTATAAATATTACTTTGTTGCCTTTTTTTTCAGTTTGAATTAGTGCT GCGTATCCAAACGTAACATCAGCTGGTACAGGTACAGGTACCGGTACAGA GGTTTAGGTACAGGTCCGGACAATTTGAAAAATTAACATGTGTTTCTCTG AACCTCTTCAACAATGACAGAAACATAAATAAACTGCTTTCAACTTGTCA GTATCTTTATTCAAAGAACATAACTAGCTAGGTTTCCTACTACCAAACTC CCTTCATAACTCCCTGCCTGCCTGAACGATCTGTTGCATATTAGTCACCC TGTTTCAAGGTGTCAATTTGGTCACGTTTGGTGTTGCATGAGGCCATGAG GTCAGGAGATCGGTCACAAAATACGCACATACTTGGTGTAAATTTATATC GGAACAGTACCGGTACTTCATGATCCGGTATTTTGGACCTGTACCTAATC AATTTTTACGTTACAGTACCGGTACGCAGCACTAGTTTGTACTCTCATCA AAGCGAGACCTCCCCTCACCCGAGAGGGCGTCCCTTACCGACTCTAGGTA CTCAGTCGGAAGTTTATTTGATTATTTACCATTATCATTATCTATTTATC TATTTATTTGAGCTTCGTTACAAAAAGTAACTGGATTTGGGTGACAGAAC CAGATCAGTCCTGTCCAATAGATTGTGAAGGATCGTCATAACACTAACAT CAACCTGTGAGAACACGATCATCTTGTCAACAGTTCAAATTTTGGCACAA CACTGGACAACACAAAGCACAACGCAATCGTACTGTATACCACACGTTCT TGCTAGCTAGAGTGTTAAGAAATATTCTAACGTGTAATGTTACTGTTCTG TTCTGTCCATTGCAGTACGTGCTACTCGTGACTTGTCCACACATAACGTA TATGAAAACTGTTTACTACAGGGTAGTACGTGCTACTGGTGACTTTTCCA CACATAACGTGAATGAAAACTGTTGACTACAGGGTAGTACGTGCTACTGG TGACTTTTCCACACATAACGTGAATGAAAATTGGTGACTACAGGGTAGTA CGTGCTACTGGTGACTTTTCCACACATAACGTGAATGAAAATTGGTGACT ACAGGGTAGTACGTGCTACTGGTGACTTTTCCACACATAACGTGAATGAA AACTGTTGACTACAGGGTAGTACGTGCTACTGGTGACTTTTCCACACATA ACGTGAATGGAAACTGTTGACTACAGGGTAGGCGCTGTAGAACTGTGGTG CGTGGAGAAGAACCAGCCACAAAACCTCACTGTTGTCGGACGACATCCCG AGTGGCCAAACACCATTGTAAGTGAATAGCTCTTTATTCACAACCGCATA TTTACATGTGCCAACATTTATCAGCCCTCCTCTATCAGCGCTGAAACCCG CTCGGGAAATGTTCGGCAACCCCTCCCGGTCTCAGCCCTGATCTTTTGAA CGGAGATTTTGGTTTCTGGGGGCGTCACTGACAGTTGTTCATAAATAATT AATGAGCTAGCCTTAATTGGTACAAACAGTCGTTAGTTGCTCATGAATAA TTAAGTAGCCATGTAAGACGTTAGCTGATTGGCTGATAGCTTCCCAGCGT CCTTTGCGGCTTTGCTCGAGATGAGCTTTAGCAAACCCTCTGATTGGCTG AAAGCTGTTTAGTGGTGACGTCGCCAGAAGCGTGTTCAGGGGCTCGGAAG TGCAGGGCCGCTATGGAGGTAACGAACATATCGGGTCTGCTGGGAGGATG ACATTTCGATGACCGTCGTTCATCTCCATCAGGGCAATACTGACTGATTT CACAGTGCACTGAAGCTAGGTGTTACTCAGCTAACAATGCAGTCCAAAAC GTAAAGTATTGTTACGATTGATATTGTTAAAGACCCACTATGTAGTTTTA GGCCAATACAGAAAGTAGATTTTCCTACTGTTTCTTTGCATAGCAAGCTT TATCAACTCTATCGAATTGCTTACCGATATTCAGGAAGGGAGGTTACAAC ATTACTGCACCATACAAACAACTTTAAAAAACTGTTATCCTCCATCCAAA ACATCACACAGTGTGAGACTAACACATGGCCACACATGGCTTCTGTACTT CTTATCAGGCTGATCGCCCAGTGAGGTGCCTGTTTACAGTTCACCAGTTT CTGTAAAAATCATCCTTACCAGAGTTCTTGCAGTTTTGAAGGGAAAATAA CCACACTTTATTGATACCCTTCAAAGTAGACTCTCTAGAATAAATTAATA CTTGTATTCTACCCTCTTGGAGAAAGATATGAGTGTTTCCAAAGAAGAAG AGCTTCATGACATCTGGCAGTCTAAAGTGTGCCTAAGTGATTAGACCACC ATTGGGGTCCTCCAGTGCACTGGGATGATGTTGTTTATCTACTATTGAGG TGGTGTCCGGGAGTTTTTGTTTTGTTTTTGTACAGTTCACAAACACCAAA AATAGATGAAATAATGAAGAAAATATGCTGAAAAGGGGTTGTACATGTCA GTACCTGCCATTAATATTAAGATTTGTTAACAAGAATATTTTCAATTTTT GCGCCAAAATCCTACATATAGTGGGCCTTTAAGCAACAATGGTGGCTCAT GTGAATAAAGAACTTTGCTATTCAGTCATTCACCAACCTGATGAAATTAT TCACGAAACCATTGTAAGTGTTCCATCATTACCTAGAATATATATAGTTT TTGTCACTGAATGATCGTCTTGAGACTTTGCATGCTGAAAACTGAGTCGG TCGAACCGAGAAACGGACTTTGCAAAGAATACTTACCCTCTGGTGATTAC TGAAAATCTTTGCCACGTTCAATGAATTCACAGACACGTGTGATTGTGAA GTTGTATGAATCATTTGTAGTTGTACGTCTCTAACATATAGAGGAATAGC AGACAAACACTTTCTTTTTATCAGGAAACTTAGATTTTGAAAATGATCCT GTAGCAGTAGAATGTCCACTGCTAGCTGAGGAAAAATCTACACTACTGAC AGGATGATGATTTTGCACTGCTGACAGGATCCTGTCATTAGTCACTTCTA TGTCAAAACATGTGCCCGGATCTAATCCAAATTCCAATCTAACTATTTAG TCAGTATAAAGACACTAAATGATGACGTACAGCTGTGAATCATTACCATT GATTTCACCCGATGATGTTTCCCTACAGATCATGGCCCTGTTCAGCCCCT GCTGCTGCCCGGGAGCAGGCCCAAACTGCGCAGACTCAGCAACTTTGTGA AACTCAGCAACTTTGTGAACAGGAGAGTCAGCATGAACACCCTGGATTTT CTACCATGGCCTGATTTCTGATTTATTTTGCCAAATCATTCACATTTGAA CACCCTGGATCTTCTACCATGGCCTGATTTCTGACTTATTTTGCCAAATC ATTCACATTTGTTTTCTAGGGATCGGGCAAAAGCAATATCGCTTGCAATA CATTACCACATGATTCTTGTTACAAATCAAGGGTGGCCCTCTTCTCTAAT AGATACACATGAGAAGAAGATCAACAAAATAACAACTAGAGTTCCACGAA CACATTATCTTCGCCAAATAATCCAGGCTTATTATGGATAGTGATTGATA TCTATTTACATGCTTTAATATCACCCCCTGAAAATTTGATCATACACAAT GCCGTTTGGAAGTTATGAGGGGGGAAGTCTAGATAGGGTTTAAATCATTT GGTGGTACAGGACTAGTATACAATGTAAGTGGTCATAAAAAAATCTGAGT ATATTGATATCATATGGGCCCCTAAAGGTTTGAAATTGCAGTGTCGTAAG TTGAAAATGATGACGAAATGGTACAGTCAATATATATGAATAGACTAAAT CGTTATTCTATATCATACACATTTTGAAAGACATTGATAGTAAATGTGAC TTTTCCGTACCTACATGTAGCAGTGGTGCAGTTTTGGGGCAGTGTACTCT CCAAGCAGAACAGTGTGTCCGGCTGGTTTTTGACGTGTTGTTAGGTGTTT TTGTTAGGCTTTCTATTTTGTCCCCTTTTCGCTATGATATCGG

Coding sequence (CDS) from alignment at Sc0000026:413769..419161-

>Blg00196.0 ID=Blg00196.0|Name=Blg00196.0|organism=Branchiostoma lanceolatum|type=CDS|length=549bp|location=Sequence derived from alignment at Sc0000026:413769..419161- (Branchiostoma lanceolatum)
ATGCACCGGAAAAACTATGTCTTCCCGCTGGTGGCCGTTGTTCTTCTCGC
GGCTGTGCACCTCTGCTGGGCCGCCAGCTGTGTGAAGACAGGTCCGTGCT
CCTGTCAGATGGACGACGGCTCAGGGGTCATTGACCTCAGGCCTCTTGTC
AACGGGAGCCCGACGTTCAAGGACATAAAAAGCTCCTATTTTCCTGACAT
CTGGGTCTACTCCTACAACCCATGTGTACCGTTCTCCGAAGGCTCCTGCA
AAAATGTATCTGTTTGTGCCAAGGACAGACTAAACCAGCGGAAGTACGAG
AGTTACGGCACGCAGGAGTCCGCGGTGTTCAGGTCTGACACGGGTGTAGG
GCTCGTCCTGGGGTACGTGGACTCGCCCTCGCTCAGGGTAGGCGCTGTAG
AACTGTGGTGCGTGGAGAAGAACCAGCCACAAAACCTCACTGTTGTCGGA
CGACATCCCGAGTGGCCAAACACCATTATCATGGCCCTGTTCAGCCCCTG
CTGCTGCCCGGGAGCAGGCCCAAACTGCGCAGACTCAGCAACTTTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00196.0Blg00196.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00196.0-exon-Sc0000026-1570713199:418998..419161Blg00196.0-exon-Sc0000026-1570713199:418998..419161Branchiostoma lanceolatumexon
Blg00196.0-exon-Sc0000026-1570713199:418516..418612Blg00196.0-exon-Sc0000026-1570713199:418516..418612Branchiostoma lanceolatumexon
Blg00196.0-exon-Sc0000026-1570713199:417854..417978Blg00196.0-exon-Sc0000026-1570713199:417854..417978Branchiostoma lanceolatumexon
Blg00196.0-exon-Sc0000026-1570713199:416495..416585Blg00196.0-exon-Sc0000026-1570713199:416495..416585Branchiostoma lanceolatumexon
Blg00196.0-exon-Sc0000026-1570713199:413769..414633Blg00196.0-exon-Sc0000026-1570713199:413769..414633Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:413769..419161 -
Properties
Property NameValue
GeneIDBlg00196