Blg00190.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00190.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:408668..411805-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00190.0 ID=Blg00190.0|Name=Blg00190.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3138bp|location=Sequence derived from alignment at Sc0000026:408668..411805- (Branchiostoma lanceolatum)
ATGTATGAGCAAGCAGAGCCGGTGCGGTCCCCTTTCTCCGGCCCCGGCAG CGGCCAAAGCAGCCGGCCGCCGCCCCAACCCCCTCCTGTCCATCAGCGCA ACAGCGCTTCTGACAAGCGGCAGGAGGGACAAGGAACTTCTTCAGACACG TACGAAGAAGCCGAGAGAGTGTACTATTCAATCAAGGACCAAGATCTACC GCCTTCTTCACATGGGGCGGGGCGGCAGCAGGAGTCGCCCCAGCCGGGGG TCCAAACCAGCGGGCCGCCGCCCAAACACCTCCCTGCCCATCAGAGTGGC TCACGCGGGCGTGGCCGCCATGGCAACGGCGCTTCTGACAAGTTGGAAGA AGAGCAAGAAAAAGTACCACACACGTACGAAGAAGCCGGCGCAACGTACA CGTCTACAGGTAACCAACTGTTTGTAACCTTTTCAGTAGGTATTTGAACG ATAAGAATAAGTTTTCTTCATTAATCAAGAGGCTGTACATGATCACTTAC GTATTCTAACATACTTTGCAGTATCTGGAAAAATTGATGATTAAGGTCTG AAAATGTATGTTTCAATATTCATATAAATTGAGTGGTAAGTATGAAGCGA AAAATACCATATTGGAGATCCAAATAAAACAAACAAGCAAACATTCAAAC CGATAGCGAGGACAATTCTTACAATGCGTGCCTCATGTACAAATCCTCAG TAGGAGACGCTAACATTCTCACATTGAAGGTCATTTTGATAGTTTGATGG AATTCACAGCTTCGTTACACTGTTCACGCAATGGCGGTCCACAATCTAGG CCTGGCGACATTTTGTTTTGTATCATTTTACTTATTTGCTTATTCATTTA TCAACATATTCATTTATTAACATGTACACTCATATATATTCAACGTCCCC ATACCTTCGCCAAGCGCTGTTTTCTATAACTATGAAAACACCTAATCTGT ATGATATATGATTCGAAATGTGCATTTTGAATGCATACTGCGCAAATATG AAATTTCATTCCATCATTCATCATTGAGTTTATACATCCTTTGTCCAACA GATATGCGAATGTTCTCATTAGTATAGTTTACACAGATTTCTTATCCCCG CTTTCCAAACTGCATATGTTGAAAATACATGTATCTAAATTCTATCCTTC TTTAGGAAAGTATTGTAGCATTTCCTCAGTCGTTATGCAAATGATATCCA CATCTACCATAATTCATGCACCAATCTCATTAATTACCTACAGTTTTTTT TTTCTTATTGCTGGTCAACAATAAAATAATATATGATAAGAAAACGGTAT TACACGGAAAGAGAAAACAGCCGGAAGGAGTAGTCTGCAACCGAGGCTAC AAGATTTAACCCATTCTTTGCCCAAGACTTAACCACATAACAACTTGCAT CGCAATCCATCCATACTCTTGAGTTTTGTGCTGCTAAACCACAACCACCC CTAGAAACGCTACCGTAAAGGTAATAATGATCATCTGAGCCAAATTGATA TTTCTAACAGACCGCACGCATTCTGGTGGAGCAAGCGGCCGCCGTTCACT CTGTAGCTTCATCCGCTCCCACCACAGCTGCATGGCCGCCGGGATTGCGG TGCTGCTCGCTGTGGTACTCGCCCCTCTGGCGTTCATCAATAAAGAGGTA AACCATCTTGTAACTTAAATCCTGTTTCGAAACTATTCTTTTCTGAAATT GTCGTTCTTAGAGACTTTCAGTGTCGAATGTTTGCTGTTTCGGTCAATTC TTTCTCGTTTGATATTCTGACGTATCTGTTTAGGAAATATCCCTACTGTC CACCACTGTTGACGCTTTGATACGCGACCAAGGCAACATGCGCCAACTGT CCATCACTGTTGGTACCTTGAAGCGCGACCAAGACGACATGTCCACCGCT GTTGACGCCTTGAAGCGCGACCAAGACGGCATGCCCCAACTGACCACCAC TGTTGACGCCTTAAAGCGTGACCAAGACGACATGCGCCAACTGTCCACCA CTGTTGACGCCTTAAAGCGCAACCAAGAGGACATGCGCCAACTGTCCACC ACTGTTGACGCCTTGAAGCGCGACCTGGACAAGGAGCGAAGCCGAACCGC CGCCTTGGAGCAGCGTCTTAACGAGATGAATAAGGAGCCACGTAAGTTAG TTTTCAGTTATTATTGTACTATTTGTGATGTCATATTGGAAAAAAATATC ATCATTTGCATAAAAACAGCTACCACGTGTTATTGTGACATTGATAACCA TACTATCTCCTTCATCATACATACATATACCTATACACATACATATATAC CTTTACCTACTCATATACATATATACATATACATATACATAAACATATGT CTGTTTTCATGTCTTAACATGTTACTGACACATACCACATGTACCAACTA TACATCATAAGGGGAGATCTAGTCTTTTGAGGAAGTCATTGTAATAATCT GTGTTCGTTTTTCACATTACCCATACCCTATTCCTTTTTGGCCTGTTGTT TTCCAGCGTCTTGTCCTGAGGGTTACACAATATGGCGTGGAATCTGCTAT AAAGCCTTCAACACCAAGAAGACCTTCAGCGATGCGGCCGCGGCCTGTCG TGAAGACGGCGGTACCCTCGCCATGTCCCGAGACGCTGAGACCAAGGCTT TCCTGGCCTCCTTGCACAAGTCCGTGAGCGACAATGATGCCTTCTGGTCC GGGCTTCACGATCCGCACGATAAGGGAAGCTTTGAGTGGGTGGATGGTTC TGCACTTGAGACGTACAACTCCTCGGCTACGGGACAACAATACGACCCTG ATGGGAAATATGATTGCGTTATTTATTCCGCATGGTCTTCCCGGAAAGAC GAGTGGGTGCCATGCAACCGGCGATATAGCTTCATATGCAAGGCTGTTCC AGGTACCTCTTATAACCGTGCCGTTTCCTGAAACCCTTCCATCTAGTATA GATATCACAGCTTAAGTATACATCTGAATAAGAATCGTAGATCACCAGTA TCAAATGCTATGTAGAAAAAAAATTCTTCCACATCTCATCTCTGCTAATT TTTCCAGGACGTCTATAGACGACAGACGGAACTCTCACCACCGCTGTACA ACGGCTCTCCGACCATCTGCAGTGGAACTAACCCGTAA

Coding sequence (CDS) from alignment at Sc0000026:408668..411805-

>Blg00190.0 ID=Blg00190.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=1218bp|location=Sequence derived from alignment at Sc0000026:408668..411805- (Branchiostoma lanceolatum)
ATGTATGAGCAAGCAGAGCCGGTGCGGTCCCCTTTCTCCGGCCCCGGCAG
CGGCCAAAGCAGCCGGCCGCCGCCCCAACCCCCTCCTGTCCATCAGCGCA
ACAGCGCTTCTGACAAGCGGCAGGAGGGACAAGGAACTTCTTCAGACACG
TACGAAGAAGCCGAGAGAGTGTACTATTCAATCAAGGACCAAGATCTACC
GCCTTCTTCACATGGGGCGGGGCGGCAGCAGGAGTCGCCCCAGCCGGGGG
TCCAAACCAGCGGGCCGCCGCCCAAACACCTCCCTGCCCATCAGAGTGGC
TCACGCGGGCGTGGCCGCCATGGCAACGGCGCTTCTGACAAGTTGGAAGA
AGAGCAAGAAAAAGTACCACACACGTACGAAGAAGCCGGCGCAACGTACA
CGTCTACAGACCGCACGCATTCTGGTGGAGCAAGCGGCCGCCGTTCACTC
TGTAGCTTCATCCGCTCCCACCACAGCTGCATGGCCGCCGGGATTGCGGT
GCTGCTCGCTGTGGTACTCGCCCCTCTGGCGTTCATCAATAAAGAGGAAA
TATCCCTACTGTCCACCACTGTTGACGCTTTGATACGCGACCAAGGCAAC
ATGCGCCAACTGTCCATCACTGTTGGTACCTTGAAGCGCGACCAAGACGA
CATGTCCACCGCTGTTGACGCCTTGAAGCGCGACCAAGACGGCATGCCCC
AACTGACCACCACTGTTGACGCCTTAAAGCGTGACCAAGACGACATGCGC
CAACTGTCCACCACTGTTGACGCCTTAAAGCGCAACCAAGAGGACATGCG
CCAACTGTCCACCACTGTTGACGCCTTGAAGCGCGACCTGGACAAGGAGC
GAAGCCGAACCGCCGCCTTGGAGCAGCGTCTTAACGAGATGAATAAGGAG
CCACCGTCTTGTCCTGAGGGTTACACAATATGGCGTGGAATCTGCTATAA
AGCCTTCAACACCAAGAAGACCTTCAGCGATGCGGCCGCGGCCTGTCGTG
AAGACGGCGGTACCCTCGCCATGTCCCGAGACGCTGAGACCAAGGCTTTC
CTGGCCTCCTTGCACAAGTCCGTGAGCGACAATGATGCCTTCTGGTCCGG
GCTTCACGATCCGCACGATAAGGGAAGCTTTGAGTGGGACGTCTATAGAC
GACAGACGGAACTCTCACCACCGCTGTACAACGGCTCTCCGACCATCTGC
AGTGGAACTAACCCGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00190.0Blg00190.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00190.0-exon-Sc0000026-1570713199:411397..411805Blg00190.0-exon-Sc0000026-1570713199:411397..411805Branchiostoma lanceolatumexon
Blg00190.0-exon-Sc0000026-1570713199:410159..410295Blg00190.0-exon-Sc0000026-1570713199:410159..410295Branchiostoma lanceolatumexon
Blg00190.0-exon-Sc0000026-1570713199:409665..410022Blg00190.0-exon-Sc0000026-1570713199:409665..410022Branchiostoma lanceolatumexon
Blg00190.0-exon-Sc0000026-1570713199:409067..409299Blg00190.0-exon-Sc0000026-1570713199:409067..409299Branchiostoma lanceolatumexon
Blg00190.0-exon-Sc0000026-1570713199:408668..408748Blg00190.0-exon-Sc0000026-1570713199:408668..408748Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:408668..411805 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00190