Blg00188.1 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00188.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2352179..2358760+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00188.1 ID=Blg00188.1|Name=Blg00188.1|organism=Branchiostoma lanceolatum|type=mRNA|length=6582bp|location=Sequence derived from alignment at Sc0000026:2352179..2358760+ (Branchiostoma lanceolatum)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTCGGATACCAGC ATAACTTGAAAACTATGGATGGATCATTATTATATTTGGAAGGTCGGGAA AACGAAGACCAATTTTCTTTATTAGGCCCCATACTGACCTTCTAAGATAC TGCCGTTCCGGTTTCAATTTATCCTGTTATGGACGTGCTATGGTCGTATA TTATGATTGGTACTAGTGGATAGTTCTTGAGGCAGAGAGTAAGTGATGTT TGCTTGGGCTCCCTCGCGGTTTCTTTTTTAACTGCAGGGGCCAAATTTGT AAGAACTTTGAAAGAAAATAACCGAAGAAGGGCTTGACGGATCATGATAA TTTTTTGTATGTTTTGGTACTTTGCTGTAACGTTAAAATTACAATTATGA ATTTTTGACTTAACAATGAGGAACAGCCTACGGCAGATCTTCAAAACACG GTGAAAATGACTAATCAGTTGTTATTTACCATAGATAAGCCTTTTATAGT TTAATATAAAGCTTTACAATGTGATTTTTTTCAATCGTTGTTTTTGATCC ACATTTTACATGTTAAATGTAACAGTAGAGGAGAAGCTTGTTATTCTTGA CGTGGACCCCGGAATTGATGACGCCATCGCCATGTTGATGGTGCTATCCC AGCCTGCCGTGCGCGTGCTGGCGGTCACGTGTGTGAAAGGGAACACACGT GACGTTCAACAGGGATGTAGGAACGCGCTGAGGGTGTTACAGGTCGCCGG ACGCATGGATGTGAGTTCTGACTTTGTTATGCATTACAGATCCACTCATC TAGAGGTATACACCTTTTTCACACGGTGGACATGATAGAATGAATACGAG GCCAATGGGGCAAAGAAGCAAAGATAATGTACCGATTTAGTTTTCCTCCT AAATCACATATCCAAGTATCAACATCATAACTAATGTAGTAATGCACACA AAAAAATCAGTAATTTAGAGCTTTTTTGTGCGATCCCATACTTCCCACCC TCTTCCGTCAAAACGTAGAAATGCAAAATAAAAACATTCCTCATTGGTCA ATTCTCTAATTATTGGCTAACCTGCTAATTGTGATTGACAGTTAGGATTT GTCTAATGTTTGCCACAGGGACCTCGTTTTCGTTTTAGCATGTTTATGGA CTTGTTTAATATTGTATGGTCAAAACGCATAATAAACACAATTTAATTTC TCAATACCAATATGCCTTGGTGTCCCAGATCCCTGTGTACGTAGGGGCAT CGCTCCAACTCATGGGCCATGACGTTTTTGACCACGCTTACTTTAACGGA GTCGACAGCTTGGGAGATGTACCAGACGTCAACCCACCTGACTACAGCCT TATCAACCAAACAGGTGCCCAGCTTGTAACTTTAGCTAAGGGCTTTCTGT CCTAAGCCCCCCTCTCACTGGACCCGCGGCACACTGGCGGCGTCGTTGCG TCCTAAACTGGATTTGTGTTACCCTTTATTTTATAATGGGAATATCATTC AAAACGTACAAGTATGATCAAAAAGACAACAAAACACACAAAGCTTGAAA ATATTTGTTTTTTTGTCGAGGAAATTTGTTGAGAGCTCTGTCAATTCGAT CTGCCGCAGCGACGTCGCCAGCGTGCCGCTGATCCAGTGAGAGGGAGGCT TTAGAGTACAGAATATTGTACGCAGCTAACGTCTTAAAAATCTCAATGCT AAAACCCGAACCAAACTCAGTAATTAGATTATTATCTTCTGACTGAAATA TTCAACCTGTGGATTATTCAACCTGTGGATTATATGAAGAGGAAGAGTTC CAAAGGAGAAAAAAAAACTCGATAATGCAGTAAGACAGCTTTGAATAGAT TCATAGTACCATTCTTTACTCGCTTATCCATCCTACATGTACTATCAGAA ATGTGTATGATGGAACTCAAGGTGTTAACCACGTGCAACAAGTTTGATAT GAGGGACGCCGTTCCAAACTGAAGCTCCATTTTGTGATCTGCTCTCGCGA GAGCAAATCCTGGCGTGAACTCGCGTGATTTGGGGCCCGAGCGGGAAATC CGATTCTGGGACCTCTTGTTACAATGATATCCCCAACAGCAAGCGCGGAG AAGAGTATGAGTGATTCTGTATGTTTGGCTAAAAGCGTAACTATTATCAT ACTAGCTTTAGTAGAAAATTAGCTTTTTTTTAAATTTTGCCTAGTTTTCA ACTGACTTATATTTTCGCCATTAGAACACGCTGTGTTGACGTTGATACGG CTGTCCAAGGCCTACCCGAACCAGATCACACTCATCGCCCTCGGTCCGCT CACTAACCTTGCCCTAGCCAGGAGGATGGACCCGGACACTTCCTCACGCT TCAAGGAGATCATCATCATGGGAGGCAACATCAGAGGTCAGGGGATGAAC TGAAACAATTTTCTAGACGGTTCTTGGTGGCAAATGTGCTAGATGTTGGC ACATCGGCAACCAAATCCGTCAAATCCGTAATGTGTTTCTGGCACATACT TTAGACAGATTAGACGAAGAGGCTCGTTGGGCGTCACTCCACTACCAGGG GAAGTCGTGTAAAGTGCCTTTCATACACACACACACACACACACATACGC GCACACACACACACACATACGCGCACACACATACATACACACACACACAC ACACACACACACACACACACACACACACACATAAATGAATTTGGTGCGCC AACGTGCCAAGATGTGCATATTTTCCGCTAAGAACCGATTTCTTTGATGA CAGAGGCTAGGAAAAGAGGACACTGGCTCGTATCATTGTCCTGACTAACA TGCTGGCTGGGTTAAACCTGGATCCTACGTATACCTGTAAAGTTGCATCT GCAAAAGACATAATACGTTAAAGTTACGTATACGTGGCAAAGAGAACAAT TTGTCTTTCGCTACAAAAGGAAATCAAATCTATTTGATATATCCAGGTTC AATTATCCAACATGGCGGACTGCACTTACGTCATAGACAAGTCATAGTTA CGTTATAGTAATAGTTACACCTATTGGTCTTATCGACGGTTTTATGATGT ATCTCATAACCTTAAAGCTGCACTATGTAACATTTTGGCGCAAAAATTGA AAATATTCTTCTGAACAAATTCTTATACAAATACATGGACAACCACTTTT CAGCATATTTCCATCATTAATTCGTCTATTTCTGGCATGTATGATGCTTT TAACTGTACAAAAACAAGCTGCAAAAGTCTGTGACGCCACCTCAACCTAA AGCCTAATGTTTGTAAACAACAACGTCCTGCACACTGGCAGGACCCCTTG GGTAGGCTAACTGCTTAGCGACACTTCAGTGGATCTAGATAACAGCTGAT GTTATGAAGATCATCTTCTTCAAAAACACTCATATCTTTTTGAATGAGGA TAAAACATGTTAGCCAAGTTTGTAGGGAACTGATAAAGTGGATTTCCCCC GTTCAAAACTGCTAGAACTCTGATAAGGACGTTTGGCAGATGCAGTATCA AGGTATCAAGGCAACTGTAATCAGGCACCCTACTGGGCAGTTGGGGTGAT AAGCCTGTCTGGCCACACTGCCCCAACTGCCAACTGGCTTTGGAAGCTCA GCTTTTAAACTGGTTTATATGGTGCAATGATGTTGAAACATTCCTTCCTG AATACTGGTATGTCATACAATGTTTATTCAACATACTATGCAAAGAAATG GTAGAAAAATTGACTTTCTGTATTAACAAAAATCTTATATAGTGCAGCTT TAACTCGTCCACAGGAGTCGGTAACATGGACGTAGCTGCCGAGTTTAACT TCTGGATGGACCCGGAGGCGGCCCAAGTAGTTTTGAGGGAGTACAAGTGT CCCATGAAGGTTGTGCCGTGGGAGGTCTGTCGAGAACACGGACTGGAATG GGTACGTCAACGAGTTTTCAGCTTCTCTATACTATATTCATTAACGCAAA GGGTATACATTTCTAGGTAAAGGTTTTTTTTGGCGAAGCCTTAGGGGCGA GCCTAATGGTATATTTATTGTGTGCAGTTTGCAATAATTCTAGCAATTGT ACAGGAATGTGAAAGTCCACGGGACCATAACTCAAGGATGCCTGCATGGA TGGATTGTTTTCATATTCGGTAGGTGGGTAGTAATTTGTGAGACCTCGAT ATGATTGGAATTTAGGCCTCCTAGCAACTTTCTATGCTACTGCAGGGAAA CTTTGGTTTCTGAAATCTCGTGTTCTGGACATGCTATGGTCAGTTTTTTT TGTGTGGTGGATAGCTCTTTATTAGGAAAATAGGTCCTGTAGATCTCGGC CCCCCAGTGGCATTATTTTAGCATTCCACGACCTGAATCAGACAGCTGTC ACTATGGTTACTGGTCATGTAGCAGACACCCTGTGGTACTCGAGTAGAAT GTAGAAAGCTTTAGTGGCAGGACAGAGCTGGAGGGCTGGTCACCATAAAT GTGAATGTGCTTGAGTAAGAATAGACAGAACAGTAGTTTGTTAGGCTGAC CGGATTGTATAAAGATAAACATAATGTATTTGCCTGCAACTGTTACATTT CGAGTATATTTATTAATTTTTATCTATTTATTTGTTTATCTATTTATTCA TTGAGAGTTATTACATTTATTTTCCATAAAGGGTTTCATCACAAGCTGGT TAACTGCAGACACACCTAAGGCTCGCTTCATCCGGGACATTTCATACAAC CTGACGCAACAACAACAACAAGACGGCGCGCTAACGTACACGCCAAGTGA CACATTGGCAACCGCCGTTGCTATGGACAACGCCCTGGCACAGACCGTAT CTAATGTGTACGCCACCGTGGAAACAAAGGGCGAGTTTACAAGAGCACAA ATGGTTGTAGATTGGGGAAGACTAAGTCGGAAAAGTCCTAATATTGACGT CATGCAAAACTTTGATATGGCACGGTATAAAGAGCTTTTGACCGAAGCAG TACATTAATGTATTGATATACATGTAATATCATGGAAGCTCATCTATGTT GGTAGTAATCCTAATACAGTAGAATCCGCTTATTTGTCAGAGTATTTTAT GCAATAATAAGGAGTAGTCCATTAACCCTAGGGGACAAAATGAGAGGCAC TGAGGGGGGAGGGGGTTGTTGTGGTTACTAGGATGGCACTTCAAGGAAAC ACACACACTTTGAGTCAAATTCACTCCCTCCCAGGTTATACAAAATTCAA CATATTGACTTCATAAGCATATCATCAGTTTTAATATATACACATGTTGA GTGCAAAGGATGGCAAATTAAGCAAAAAATTGGCAATTCTATTCTTCTGT ATCCTATCACAGCAAATGACAATGGAGTTGCTAGAGCTTTTTCAAAACAT AAAGGACAACAACAGTTCCTATGGAGTTGTTTTACCATAGAAACTATCCA TACTCGATTTACATTTGAATAACATTTGCATACAATCTATAAGAGTTAGT GACTTTGACATGTTCAACCAGTTTTTCCTGTTGCCATTGGCATTATTTTA TGCAAATATGAGGAGTATGCAAAAATGGATGGGAAATGGTTTGGGTTTTC AGAATGTTATGCATATCCCCGAAAAATGCTATTAACAGTAATGCAAATAG CTGGATTCTACTGTACAATGTTAAACTTTCTTCCAACACTAAAGGTACTC GTGGATCAAGTTTCTGGTGACCACTGTAGTCTTCTTCATGATCAATAAGG CGACTACTTCATGAGACATATACATCAGGGCTCTCCAGTCAGCACTTACC AGAGACAGTGGACGTTATAAACTTCCTGGCACGTTTGACCAACTGCCTAC GTCACGTTTTTGTAAAGATACGTGTCAATAAAGTCACGTGTCCGTAGCTC TCGCGAGTTTACGTTCGGCAGTGATTGGGCATAATTGATCCTGAAGAAGG CGACAGTGGTCGTTGAAAATTTGATCCGTGAATACCTTAGTGTTGGAAGA AAGTTTAGCACTGTAGTATTGATATAATGCACAGTTTTTCTTCCACCAGT ACCCTTTTTTATCATGACCAGACGGGTGGCGGTATAGATTTCCCCTGCTT TAAGTAATACATTTGTCATTGACGGGCGATAAATGTAACATAACGGTAGA TATAAGCTTTTCATTACAATAATATCAACAATATCGATTATATGATGATA ACTTACATCTTTATAAACTTAAGTTGATTCTTTTAAGTTGTTAGCAAAAT ACGAATCAGTTATACTCGACCTTGTGGTGTTTATGACACCAAAATACAAC GTTTTCTTATCATCTGCAATACATAAACGTTTAAACAAATACACACCCTT CGGATGTTATTTAACATTGAACCATCAGAAACCATACTTCCAGCTCTTGA TTAAGTTCTGATCTTCTCACCTGGTAACTACATTAATCAGTGACTTTAAG TTCCAAACAGGCTGCCATGTTCATTGTGACGTCATGAGGGGTGAAGTCAC TGATTAATGCAATAACATCCGAAGTGTGTATGCTTTTTGCAAATGCCTAT GTAATTAAACAATATTATTATGGTTTATGTAATTTCAGGAAATTCGTAAC TTTGATGTCATTGGTGTCTTATACACTTGAAG

Coding sequence (CDS) from alignment at Sc0000026:2352179..2358760+

>Blg00188.1 ID=Blg00188.1|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=963bp|location=Sequence derived from alignment at Sc0000026:2352179..2358760+ (Branchiostoma lanceolatum)
ATGTTAAATGTAACAGTAGAGGAGAAGCTTGTTATTCTTGACGTGGACCC
CGGAATTGATGACGCCATCGCCATGTTGATGGTGCTATCCCAGCCTGCCG
TGCGCGTGCTGGCGGTCACGTGTGTGAAAGGGAACACACGTGACGTTCAA
CAGGGATGTAGGAACGCGCTGAGGGTGTTACAGGTCGCCGGACGCATGGA
TATCCCTGTGTACGTAGGGGCATCGCTCCAACTCATGGGCCATGACGTTT
TTGACCACGCTTACTTTAACGGAGTCGACAGCTTGGGAGATGTACCAGAC
GTCAACCCACCTGACTACAGCCTTATCAACCAAACAGAACACGCTGTGTT
GACGTTGATACGGCTGTCCAAGGCCTACCCGAACCAGATCACACTCATCG
CCCTCGGTCCGCTCACTAACCTTGCCCTAGCCAGGAGGATGGACCCGGAC
ACTTCCTCACGCTTCAAGGAGATCATCATCATGGGAGGCAACATCAGAGG
AGTCGGTAACATGGACGTAGCTGCCGAGTTTAACTTCTGGATGGACCCGG
AGGCGGCCCAAGTAGTTTTGAGGGAGTACAAGTGTCCCATGAAGGTTGTG
CCGTGGGAGGTCTGTCGAGAACACGGACTGGAATGGGGTTTCATCACAAG
CTGGTTAACTGCAGACACACCTAAGGCTCGCTTCATCCGGGACATTTCAT
ACAACCTGACGCAACAACAACAACAAGACGGCGCGCTAACGTACACGCCA
AGTGACACATTGGCAACCGCCGTTGCTATGGACAACGCCCTGGCACAGAC
CGTATCTAATGTGTACGCCACCGTGGAAACAAAGGGCGAGTTTACAAGAG
CACAAATGGTTGTAGATTGGGGAAGACTAAGTCGGAAAAGTCCTAATATT
GACGTCATGCAAAACTTTGATATGGCACGGTATAAAGAGCTTTTGACCGA
AGCAGTACATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00188.1Blg00188.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00188.1-exon-Sc0000026-1570713199:2352179..2352938Blg00188.1-exon-Sc0000026-1570713199:2352179..2352938Branchiostoma lanceolatumexon
Blg00188.1-exon-Sc0000026-1570713199:2353407..2353542Blg00188.1-exon-Sc0000026-1570713199:2353407..2353542Branchiostoma lanceolatumexon
Blg00188.1-exon-Sc0000026-1570713199:2354403..2354564Blg00188.1-exon-Sc0000026-1570713199:2354403..2354564Branchiostoma lanceolatumexon
Blg00188.1-exon-Sc0000026-1570713199:2355943..2356079Blg00188.1-exon-Sc0000026-1570713199:2355943..2356079Branchiostoma lanceolatumexon
Blg00188.1-exon-Sc0000026-1570713199:2356810..2358760Blg00188.1-exon-Sc0000026-1570713199:2356810..2358760Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2352179..2358760 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00188