Blg00187.1 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00187.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1334206..1336837-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00187.1 ID=Blg00187.1|Name=Blg00187.1|organism=Branchiostoma lanceolatum|type=mRNA|length=2632bp|location=Sequence derived from alignment at Sc0000026:1334206..1336837- (Branchiostoma lanceolatum)
CATGACACGCCCTTTAAAATATAACTGCGTCAGCAGGTACTTGGCAACTT GGCCACAGACTGATCCATCTTCAACTTCAAGCTAGAAAATTGACGTTTTA CTTGCAACTTGTGGGTTTACCAAAGGATTTCACTTTCCGCAATGACGCCG ATACGTAATAAAGACATACGTTGTTGTCTAATCACAAGAAACATAAACAT AAAAGTTTGTTGCAGATTTGTAAGGAATTCTGAGCAACAAGGTGAGAAAT TTCTTAAAAACAGCGTTCCCTAACACACACGTCAATATGGTATAGCCCGT ATTCAAATTCACATCACATACCCTCTAGAATATAACTGCGTCAGCAGGTA ACTCGGCAACTTGGCCCCAGCACCATTCCACCCTCAACTTCAAGCTGGAA AGTTAACGTTTTACTTTCATCTTGTGGGTTCACCAAAGGATTTCACTTCA CACAAAGACGCCGATACGACATCACGACAAGGATACGTGCAGTTGTGAGT AAATTGGGAACAGGAGAACGGACCGTAAGTTTGAAAGTTCACCAGGACTG TGGTCAAAATGGGCTGTTTCTTCTGTTAACGTTTGTCAACCGAGAAGGTA ACTACGTGCTGTTGTGATACCGGACTATTACTTTTGACCGTGACAACTAT CCAGGACTCCGAACTTCTTGTATCTACGCGAAAGTCTGTGTGGAAACCTT ACGGAATTTCTCTGAGTCTGTATCATTTTCATGAACATCGTTTAAGTAAA GCGTTCTTTGGGCGTTTCCAGTTAAGGTCTTATAATTATTGCCAGACTGA ACAAACACGAAGGACCTTTAGTTTGAACAAATAAGTAAGCTATTCAACTC TTCGTTCATGTTTATAGGTACGTAGAACAACAACACAGAAGTGTGAACCG CCGTGGACAAACAAAACAGGAGCAAAACAACAGCCTCCCAGTCAGGACAA GACCGAAGTCACTGGCCTCTCTGTCTCAACAGTTGAATAGCATCAACACA ACATAGACGTACAAATGGCGCTCGACTTGCTAATCGTGGGTGACTCCAAT ACAAAGCGCATAGAAACGTACGACATGTACCAATCTAAACGTGTGACAAA GGAACTGACCTACACCATAACAGACGCTACAAATTTCATCGGAGATTATA AGATGTCCGACCCGAAAGTCGTCCTATTCCATGTTGGAACAAACGATACC TGGAAAAAACAAGATCAGACAGATGTATCCGAGGATGTATCCAAGAGTTT CAGAAAGCGCATCCAGACAACCCATGACAGGTCTCCACAAACTCCTATTG TGTTCTCCTTGATTCTGCCCGACGTGGAACCTAAACTACAGGAAATCAGA AACGAGGTGAACACTTTCTTGAGGGAAGAGGCTGAAAAAACTGACTACGT ACACGTCACGGACAACAGCAACCTGCTGACTGACAAGGGGACGATAGATG AAGCCCTGTTTAGGTCTGATGGCTACCACCTGAACGAATCCGGTGTCCTT GTGTTGGTTTCCAACATGAAGAGAGTGGTCAACCCTCTTCTGGGACTTGG TCAGTGCGCTAGCTGGGATGAAGGGGCAAACCCCCAACCACAAGGACAAG GTCAAAGTTAAACCTCGTGGTACTCCAATGCCAAAAGACACCGACTGGAA GTCCTACTGCCACGTTAAGTGGTCGTATAAAAAAATGCACGCCTCATGCC AAGCCAGTCATCGCGATCACGGAATAGCCCGCAAAGCCAGCGCTCGGGAC CATTAAGCAAACCGCCTAGTCAAAGGAGGGACCATAGACTAGACCAGCAA TGATCTTATTAGGTTATAGGCTGTACAATGTTCTATTGCAAACTACAGGA GGGTTCTGGGCTATAAAATGTTGTCAATGGTAGATGATATCAACAGGAGA TACAATAGGGAGTGGTATATGTCAATTATACAATTAAATGATGAGGAGAT GAATGTCTTATACAATCAAATCGCTATTTCACAGATTCTTATTGTATAGA TGTATAGATATATTGGCCCAGATATACAGATACTGTGTCGGGACATGACA TACGTACACGAAACGTCTCTATATTTGCCTGTGCCTCAGTGCTTGGAGAA CAACAACAATTTACGAAAATACAGATTACTAAACATTACTTACTGTGATG AGAAACGTACAAAAGTTACAAACATTCGACAACGAAAGGTCATCACAAAA CTCCGGATGAGTTCGAACAAACTCTGAATAGAAACAGGCATATATATATA ACCACATTCCTTTGCAGCGAAGAATTTGCCTATATTGTAATTTAGATAGA ATTGAGGACGATTGTCATTTATTTTGTTGTTGACTGCACATAATAAAACC ACGAGAAAAATATTAGCTTTGATTGTATACACGATTGTATGTGTTGGGGA TATTTGAACAGCATACAAAAAATCGTATTCATAACGGAATTAAACAAACC ATGTAACATTAGCTCCATATGTCCATAAATCTACCACAGTCTTTATAAGC GATGAACATGAATAATTCTTTACGAAACTGATGTAGTAAGATATTATGTT CTAATTTCACCATGAAATGTTTTTTTTAGCTTGCAAAAGCATTAATGTAC AATAAAGGTCTTTCTTTCAATAAACATTCAAT

Coding sequence (CDS) from alignment at Sc0000026:1334206..1336837-

>Blg00187.1 ID=Blg00187.1|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=597bp|location=Sequence derived from alignment at Sc0000026:1334206..1336837- (Branchiostoma lanceolatum)
ATGGCGCTCGACTTGCTAATCGTGGGTGACTCCAATACAAAGCGCATAGA
AACGTACGACATGTACCAATCTAAACGTGTGACAAAGGAACTGACCTACA
CCATAACAGACGCTACAAATTTCATCGGAGATTATAAGATGTCCGACCCG
AAAGTCGTCCTATTCCATGTTGGAACAAACGATACCTGGAAAAAACAAGA
TCAGACAGATGTATCCGAGGATGTATCCAAGAGTTTCAGAAAGCGCATCC
AGACAACCCATGACAGGTCTCCACAAACTCCTATTGTGTTCTCCTTGATT
CTGCCCGACGTGGAACCTAAACTACAGGAAATCAGAAACGAGGTGAACAC
TTTCTTGAGGGAAGAGGCTGAAAAAACTGACTACGTACACGTCACGGACA
ACAGCAACCTGCTGACTGACAAGGGGACGATAGATGAAGCCCTGTTTAGG
TCTGATGGCTACCACCTGAACGAATCCGGTGTCCTTGTGTTGGTTTCCAA
CATGAAGAGAGTGGTCAACCCTCTTCTGGGACTTGGTCAGTGCGCTAGCT
GGGATGAAGGGGCAAACCCCCAACCACAAGGACAAGGTCAAAGTTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00187.1-exon-Sc0000026-1570713199:1336700..1336837Blg00187.1-exon-Sc0000026-1570713199:1336700..1336837Branchiostoma lanceolatumexon
Blg00187.1-exon-Sc0000026-1570713199:1336314..1336380Blg00187.1-exon-Sc0000026-1570713199:1336314..1336380Branchiostoma lanceolatumexon
Blg00187.1-exon-Sc0000026-1570713199:1334206..1335970Blg00187.1-exon-Sc0000026-1570713199:1334206..1335970Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00187.1Blg00187.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1334206..1336837 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00187