Blg00185.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00185.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1322574..1324514+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00185.0 ID=Blg00185.0|Name=Blg00185.0|organism=Branchiostoma lanceolatum|type=mRNA|length=1941bp|location=Sequence derived from alignment at Sc0000026:1322574..1324514+ (Branchiostoma lanceolatum)
TTCAGACACACCGTGACTTAACTGCCGCGGCCGAGCGTTTCGTTTGGATG TCGGACACGCAGTACACGAAAGGTAAAAGCAGGCCGTAAACCACGCTTTT TGTCATTCTCTGATAGTCCCTGCTAAGACAAATGCCAAATGAATAGCTGA AATCATCTTTCCCACTTTTTACAGAACTGCACTTAACCTCGGGTGGTTCA TACATTAAGAAATATGACGGAACAACAGTCAGCGACATTTACAGCTGAGA AGAACGGTAAGTGTAATATATAAAGCTTATTATGTGTATGTTATATTTCT CGACTTATTGTCTTAAAAGCTTAAAGTGGCTTTTCAACAAGACAGCTACA TAAAACGACTTGTATATGTGATATCTCAAACTTATTTTTTATCAATCATT ATTTCACCAGATTATGTTGCAAAGGACTTCGTCCTTTTTGTGTCAAAAAC ACACAAAAATAAAGTCTTGAAGATACAAGTCGACTTCAAAAGTTCGGCGA GAGGCGGTCTATACTGTGTTATTTACAGTTTGATCATCATCATCATTGGT CGACTTCTACGCAGGCGACTGTAAGTTTCCAGTTCAATAGAGTACATGTA TTTATTTGATCCCTGTTCTATTCAGTCTTTTCAGAGTTGACAACCCCAAA ATCGCCCCTGACTGTGCCTTGTGAGAAGTGCGGCCACAACACGCCTGTTC CCCTGGTCAACACGACTGTCAACGTCTTCAAGAACTACAACTTCACAGAT TGTCAGAATGTCCAGTGTGGGGACAAGAACACCATAAACGTTGGGACTAC CGGGGACTCTTCGGACTAAACAAGCAAAGAATTACCACTTGTAAAATTGT ATCTGTGGGTAGTTAATTTCTTATTTCAGCAGTCAGTGAAAGACAAAAAA AATGTTCAATTAATCCCCAAATCTCCTTCATGCATTTTCCCTTTATCACA CTGGCTAATTTTCATTTTAGTTTCTAAGTAGTTGTAGAATAAAGGGTTAG ACTACATTATTTCTGCCGATGCGGCCTATCCCGGAAGTGACTTGGTGAGC GCTGTGACGGACGCGGAGTGACATGATATAGCACTGTTGTGTAAAGTTAC TACTATTTGTACTACGCATTCATGCACAAGAACAACCTTTGTCAATCGAT ATAGTTTCGTGAAACCATTTCAAGAATGTAATGTTTTATCAGGTACGATT AAACGTGCTTAAAACAAATATTTTTGCAGGATCCTGTATAAAAATCAGTG GCCTAGTGCAAAAAGAGAAAGCACTATCCTTTGCCGGTATCGCGGGAGTA CAAGTCGAGGACTAAAAACATGACTGGGGAAGACAAGAACTGTAAGAGAG AAATAACGGACATAGTCTGGGCGCCTCGCCCGAAATTATACTGAAAAAAA GAACAGTAAGCAATAATCAGAAGACACAAGGTGGCGAGAAAGAATGTTTA TAGTAGTCTTAATCAAAGTCTCAACGAGCACCGTGTCTCACCGATGATAG TGTATGCCGATGAAATGTACTCAGTCTAGTATATAGTGACTATATATTTA TAAAATATATACTGTACCTGATTGTTACTCTTTTCGATTTGAATACTGAA GGGAATGAAAAATTGTGTTTTTTTTCTATGCACAAGGGAAATAACATGTA CAAAAATGATCAAATTTTCCAGATATTTCTAGACACTTTTTTTTTTCTTC TGTAAGAACCGCAACCAGAAACTGAGAAGACAACATAATACAGACTCAGG CAGTTGTATTTATACAATTGAATGTTTATTATTGCGTGGTTATTTTTATT CGTGGCACTTTCAAACTCTGTGTTTTCCCTTCAAGGGCATAAGTATGTCT AAATAGACTGTATTCTGAATTGTTGATTTAGTAAAGTTACTGTACTCATA CTACAGATATGCAATCTGACAGCGACTCTGTCCAAAAATAG

Coding sequence (CDS) from alignment at Sc0000026:1322574..1324514+

>Blg00185.0 ID=Blg00185.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=237bp|location=Sequence derived from alignment at Sc0000026:1322574..1324514+ (Branchiostoma lanceolatum)
ATGACGGAACAACAGTCAGCGACATTTACAGCTGAGAAGAACGTCTTTTC
AGAGTTGACAACCCCAAAATCGCCCCTGACTGTGCCTTGTGAGAAGTGCG
GCCACAACACGCCTGTTCCCCTGGTCAACACGACTGTCAACGTCTTCAAG
AACTACAACTTCACAGATTGTCAGAATGTCCAGTGTGGGGACAAGAACAC
CATAAACGTTGGGACTACCGGGGACTCTTCGGACTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00185.0-exon-Sc0000026-1570713199:1322574..1322645Blg00185.0-exon-Sc0000026-1570713199:1322574..1322645Branchiostoma lanceolatumexon
Blg00185.0-exon-Sc0000026-1570713199:1322748..1322829Blg00185.0-exon-Sc0000026-1570713199:1322748..1322829Branchiostoma lanceolatumexon
Blg00185.0-exon-Sc0000026-1570713199:1323199..1324514Blg00185.0-exon-Sc0000026-1570713199:1323199..1324514Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00185.0Blg00185.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1322574..1324514 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00185